Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 2.5e-114 416.0 303 100.0
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 1.0e-96 357.5 303 82.5
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 3.7e-94 349.0 307 81.8
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 7.0e-93 344.7 311 77.8
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 8.9e-88 327.8 318 73.0
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 1.5e-87 327.0 304 79.3
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 1.0e-83 314.3 300 67.3
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 8.0e-81 304.7 300 72.3
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 1.2e-76 290.8 300 63.3
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.8e-72 276.9 317 61.2
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 1.8e-72 276.9 305 62.0
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 2.3e-72 276.6 318 58.5
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 8.9e-72 274.6 303 66.7
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.5e-71 273.9 289 64.0
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 2.0e-71 273.5 306 63.7
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 2.6e-71 273.1 304 62.5
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 2.6e-71 273.1 304 66.1
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 3.4e-71 272.7 302 64.9
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 1.3e-70 270.8 296 62.8
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 2.9e-70 269.6 297 64.3
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 3.7e-70 269.2 311 58.8
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 3.7e-70 269.2 304 62.8
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 4.9e-70 268.9 304 60.9
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 6.4e-70 268.5 305 57.4
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 8.3e-70 268.1 312 62.5
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 1.1e-69 267.7 302 63.6
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.9e-69 266.9 305 57.0
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 1.9e-69 266.9 307 65.5
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 4.1e-69 265.8 305 53.4
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.2e-68 264.2 301 56.8
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 1.2e-68 264.2 302 57.6
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 2.7e-68 263.1 304 58.9
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 4.6e-68 262.3 324 60.2
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 6.0e-68 261.9 294 65.0
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.0e-67 261.2 305 56.1
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 1.0e-67 261.2 297 63.0
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 3.9e-67 259.2 307 61.2
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 3.9e-67 259.2 298 62.4
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 5.1e-67 258.8 307 61.2
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 5.1e-67 258.8 300 67.7
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 6.6e-67 258.5 309 65.7
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 1.1e-66 257.7 307 64.8
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 1.9e-66 256.9 312 66.0
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 1.9e-66 256.9 295 62.0
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 3.3e-66 256.1 308 65.9
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 5.6e-66 255.4 296 59.1
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 5.6e-66 255.4 296 63.2
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 7.3e-66 255.0 305 64.9
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 7.3e-66 255.0 305 65.2
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 7.3e-66 255.0 306 55.2
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 7.3e-66 255.0 306 55.2
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.6e-65 252.7 314 56.7
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 3.6e-65 252.7 302 64.2
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 4.7e-65 252.3 316 66.8
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 4.7e-65 252.3 305 62.0
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 1.4e-64 250.8 299 60.9
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 2.4e-64 250.0 304 61.5
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 3.1e-64 249.6 297 63.0
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 4.0e-64 249.2 305 60.3
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 4.0e-64 249.2 307 57.7
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 5.2e-64 248.8 291 55.7
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 5.2e-64 248.8 294 67.0
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 5.2e-64 248.8 294 67.0
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.2e-63 247.7 322 59.6
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 1.2e-63 247.7 315 60.0
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 1.5e-63 247.3 297 63.0
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 2.0e-63 246.9 303 57.4
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 2.6e-63 246.5 294 57.5
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 4.4e-63 245.7 292 68.5
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 7.6e-63 245.0 306 60.5
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 7.6e-63 245.0 312 60.6
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 9.9e-63 244.6 308 57.8
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 1.3e-62 244.2 298 55.0
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 1.3e-62 244.2 302 59.6
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 1.3e-62 244.2 306 58.8
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 1.7e-62 243.8 300 65.3
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 2.2e-62 243.4 292 52.4
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 2.9e-62 243.0 309 59.9
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 4.9e-62 242.3 303 58.4
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 4.9e-62 242.3 304 64.5
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 1.1e-61 241.1 303 63.7
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.4e-61 240.7 314 59.9
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 1.4e-61 240.7 309 61.5
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 1.9e-61 240.4 312 61.9
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 5.4e-61 238.8 317 56.5
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 5.4e-61 238.8 304 57.6
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 1.2e-60 237.7 295 60.7
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 1.6e-60 237.3 307 66.1
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 2.1e-60 236.9 310 58.4
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 2.1e-60 236.9 297 55.2
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 2.7e-60 236.5 297 58.9
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 4.6e-60 235.7 294 60.2
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 4.6e-60 235.7 298 57.4
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 6.0e-60 235.3 313 62.3
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 1.7e-59 233.8 313 62.0
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 1.7e-59 233.8 304 63.5
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 3.9e-59 232.6 300 60.7
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 1.9e-58 230.3 311 67.5
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 4.3e-58 229.2 307 60.9
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 1.2e-57 227.6 298 54.4
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 1.2e-57 227.6 298 54.4
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 2.1e-57 226.9 320 60.9
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 6.2e-57 225.3 323 57.3
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 1.1e-56 224.6 308 59.1
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 4.0e-56 222.6 308 59.7
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 5.2e-56 222.2 310 60.0
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 6.9e-56 221.9 307 58.3
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 9.0e-56 221.5 316 65.5
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 1.2e-55 221.1 301 59.1
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 3.4e-55 219.5 294 59.2
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 3.4e-55 219.5 293 60.8
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 5.8e-55 218.8 315 60.0
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 3.8e-54 216.1 295 54.9
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 3.8e-54 216.1 301 59.1
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 4.9e-54 215.7 308 59.1
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.4e-53 214.2 291 61.5
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 4.2e-53 212.6 300 57.3
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 5.4e-53 212.2 347 53.9
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 7.1e-53 211.8 295 58.3
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 1.6e-52 210.7 295 59.0
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 2.1e-52 210.3 310 57.4
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 6.0e-52 208.8 292 52.1
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 1.0e-51 208.0 326 51.5
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 1.0e-51 208.0 311 60.5
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 2.3e-51 206.8 120 85.0
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 3.0e-51 206.5 321 52.6
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 8.7e-51 204.9 228 66.7
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 2.5e-50 203.4 323 55.1
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 2.5e-50 203.4 302 55.0
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 1.3e-49 201.1 295 54.2
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 9.0e-48 194.9 295 51.2
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 5.8e-47 192.2 300 51.3
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 5.8e-47 192.2 252 55.2
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 1.3e-46 191.0 397 45.1
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 8.4e-46 188.3 296 51.0
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 4.2e-45 186.0 298 50.7
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 7.9e-44 181.8 290 52.8
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 7.9e-44 181.8 298 49.3
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 9.6e-42 174.9 121 72.7
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.4e-40 171.0 119 70.6
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 2.6e-39 166.8 118 69.5
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.1e-37 161.4 311 46.0
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 4.2e-37 159.5 295 46.8
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 2.1e-36 157.1 295 46.8
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 3.5e-36 156.4 301 49.8
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 3.5e-36 156.4 281 48.0
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 3.5e-36 156.4 230 66.5
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 1.8e-35 154.1 108 69.4
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 6.7e-35 152.1 118 62.7
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 2.5e-34 150.2 126 61.9
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 6.9e-32 142.1 123 61.0
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 4.2e-29 132.9 81 85.2
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 7.1e-29 132.1 94 74.5
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.2e-28 131.3 83 81.9
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 1.6e-28 131.0 204 53.4
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 7.4e-26 122.1 109 56.9
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 1.3e-22 111.3 326 47.9
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 5.0e-22 109.4 303 42.6
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 9.4e-21 105.1 86 65.1
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.0e-19 101.7 91 60.4
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 1.4e-19 101.3 282 45.4
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.0e-19 100.1 114 50.0
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 3.9e-19 99.8 88 64.8
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 1.1e-18 98.2 341 41.1
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 1.1e-18 98.2 302 29.5
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 1.9e-18 97.4 318 46.9
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 7.4e-18 95.5 84 64.3
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.7e-17 94.4 73 68.5
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 2.2e-17 94.0 78 64.1
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 2.6e-15 87.0 115 44.3
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.8e-14 83.2 114 49.1
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 5.0e-14 82.8 62 62.9
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.6e-12 76.6 45 86.7
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.4e-11 74.7 156 37.2
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 1.8e-11 74.3 278 47.5
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.5e-10 71.2 89 49.4
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 5.7e-10 69.3 85 50.6
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 2.8e-09 67.0 80 45.0
ATR0737G020 Amborella trichopoda HOM05D003822 ORTHO05D004484 1.2e-07 61.6 77 50.6
FAN06G2565 Fragaria x ananassa HOM05D003822 ORTHO05D001690 7.7e-07 58.9 80 45.0
Zm00001eb392350 Zea mays HOM05D000367 ORTHO05D001438 1.0e-06 58.5 44 72.7


User provided reference genes

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