Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 1.3e-105 386.3 190 100.0
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 2.8e-95 352.1 190 90.5
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 2.8e-95 352.1 190 90.5
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 1.8e-94 349.4 190 89.5
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 7.5e-93 344.0 190 86.3
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 9.2e-83 310.5 189 80.4
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 8.1e-71 270.8 188 68.6
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 8.1e-71 270.8 188 68.6
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.1e-70 270.4 172 72.7
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 1.4e-70 270.0 190 71.1
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 1.8e-70 269.6 179 70.9
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 5.2e-70 268.1 179 70.4
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 8.9e-70 267.3 190 67.9
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.3e-68 263.5 177 71.8
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 1.7e-68 263.1 190 67.9
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 2.9e-68 262.3 189 67.7
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 2.9e-68 262.3 189 68.3
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 2.9e-68 262.3 171 72.5
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 6.4e-68 261.2 170 72.4
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 6.4e-68 261.2 171 71.3
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 1.1e-67 260.4 179 68.2
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 1.9e-67 259.6 184 66.3
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 1.9e-67 259.6 184 66.3
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 1.9e-67 259.6 179 69.8
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 1.9e-67 259.6 183 70.5
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 1.9e-67 259.6 172 74.4
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 3.2e-67 258.8 163 74.2
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 4.1e-67 258.5 171 70.2
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 5.4e-67 258.1 171 70.2
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 7.1e-67 257.7 193 66.8
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 7.1e-67 257.7 172 69.8
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 1.2e-66 256.9 169 71.0
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.6e-66 256.5 137 89.1
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 2.1e-66 256.1 189 68.3
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 2.1e-66 256.1 171 71.3
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 3.5e-66 255.4 190 67.9
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 3.5e-66 255.4 184 65.2
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 4.6e-66 255.0 174 70.7
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 6.0e-66 254.6 165 77.0
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 1.3e-65 253.4 184 65.2
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 2.3e-65 252.7 179 68.2
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 3.0e-65 252.3 171 71.9
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 3.0e-65 252.3 184 66.3
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 3.0e-65 252.3 171 69.6
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 5.1e-65 251.5 181 66.9
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 8.6e-65 250.8 179 66.5
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 1.1e-64 250.4 184 64.1
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 1.1e-64 250.4 183 66.1
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 1.5e-64 250.0 163 74.8
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 1.9e-64 249.6 172 68.0
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 3.3e-64 248.8 179 66.5
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 3.3e-64 248.8 184 65.8
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 3.3e-64 248.8 184 65.8
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 4.3e-64 248.4 184 65.2
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 4.3e-64 248.4 170 68.2
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 4.3e-64 248.4 170 68.2
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 4.3e-64 248.4 170 68.2
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 4.3e-64 248.4 181 64.6
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 4.3e-64 248.4 185 64.9
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 5.6e-64 248.1 189 64.6
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 5.6e-64 248.1 191 65.4
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 5.6e-64 248.1 173 69.4
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 5.6e-64 248.1 190 67.4
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 9.6e-64 247.3 184 63.6
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 1.2e-63 246.9 184 65.8
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.6e-63 246.5 179 64.8
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.6e-63 246.5 170 67.6
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 2.1e-63 246.1 187 65.8
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 2.8e-63 245.7 189 62.4
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 2.8e-63 245.7 189 62.4
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 2.8e-63 245.7 189 62.4
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 2.8e-63 245.7 171 68.4
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 2.8e-63 245.7 188 62.8
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 2.8e-63 245.7 183 63.9
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 3.6e-63 245.4 171 68.4
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 3.6e-63 245.4 184 63.6
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 3.6e-63 245.4 184 65.2
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 4.7e-63 245.0 184 64.7
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 6.2e-63 244.6 184 64.7
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 8.1e-63 244.2 187 62.6
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 8.1e-63 244.2 190 60.5
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 8.1e-63 244.2 176 67.6
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 1.1e-62 243.8 184 64.7
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 1.4e-62 243.4 190 62.6
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 1.4e-62 243.4 190 62.6
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 1.4e-62 243.4 172 66.3
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 1.4e-62 243.4 172 66.3
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 1.4e-62 243.4 189 61.9
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 1.8e-62 243.0 171 65.5
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 2.4e-62 242.7 184 62.5
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 3.1e-62 242.3 182 65.9
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 3.1e-62 242.3 184 64.1
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 4.0e-62 241.9 171 66.1
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 4.0e-62 241.9 184 62.0
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 5.2e-62 241.5 194 61.9
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 6.8e-62 241.1 185 65.4
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 8.9e-62 240.7 171 69.0
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 3.4e-61 238.8 184 63.0
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 3.4e-61 238.8 172 64.5
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 4.4e-61 238.4 185 63.2
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 7.6e-61 237.7 184 64.7
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 1.3e-60 236.9 172 62.8
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 1.3e-60 236.9 178 64.0
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 1.7e-60 236.5 171 63.7
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 1.7e-60 236.5 179 63.7
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 2.2e-60 236.1 188 62.2
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 3.8e-60 235.3 183 61.2
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 6.4e-60 234.6 184 64.1
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 6.4e-60 234.6 171 65.5
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 1.4e-59 233.4 185 62.7
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 3.2e-59 232.3 163 67.5
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 3.2e-59 232.3 186 64.0
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 5.4e-59 231.5 170 64.7
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 5.4e-59 231.5 172 65.7
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 7.1e-59 231.1 173 67.1
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 2.1e-58 229.6 193 62.7
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 2.7e-58 229.2 172 66.3
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 3.5e-58 228.8 185 62.2
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 6.0e-58 228.0 161 67.1
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 1.3e-57 226.9 164 66.5
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 1.3e-57 226.9 171 64.3
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 1.7e-57 226.5 219 54.3
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 1.7e-57 226.5 184 61.4
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 2.3e-57 226.1 181 63.0
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 3.0e-57 225.7 163 68.7
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 5.1e-57 224.9 163 66.3
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 5.1e-57 224.9 167 65.9
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 5.1e-57 224.9 171 62.0
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 8.7e-57 224.2 189 61.4
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 2.5e-56 222.6 259 49.8
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 1.3e-55 220.3 181 63.0
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 2.1e-55 219.5 162 66.0
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 2.8e-55 219.2 162 62.3
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 6.2e-55 218.0 170 61.8
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 8.1e-55 217.6 143 73.4
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 4.0e-54 215.3 171 59.6
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 2.0e-53 213.0 183 57.4
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 4.4e-53 211.8 189 53.4
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 2.2e-52 209.5 188 52.1
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 3.5e-50 202.2 158 59.5
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 7.3e-48 194.5 190 54.2
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 1.3e-47 193.7 172 55.8
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 8.1e-47 191.0 134 67.9
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 5.8e-45 184.9 123 68.3
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 2.4e-43 179.5 198 48.5
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 2.4e-43 179.5 198 48.5
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 5.1e-41 171.8 128 62.5
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 5.6e-40 168.3 171 52.0
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 2.8e-39 166.0 124 62.9
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 6.9e-38 161.4 106 71.7
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 2.8e-31 139.4 168 45.8
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 1.6e-26 123.6 128 50.0
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 9.4e-19 97.8 111 48.6
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 1.4e-17 94.0 73 56.2
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 3.3e-16 89.4 104 47.1
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 2.8e-15 86.3 173 30.1
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 3.8e-12 75.9 53 64.2
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 1.1e-08 64.3 49 63.3
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 3.3e-08 62.8 49 53.1


User provided reference genes

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