Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 0.0e+00 1115.5 559 100.0
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 1.7e-310 1068.5 560 95.9
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 7.1e-309 1063.1 560 94.8
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.6e-303 1044.6 576 91.5
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.2e-300 1035.8 560 92.7
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 5.1e-299 1030.4 537 95.7
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 2.1e-284 981.9 515 94.0
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 9.4e-269 929.9 559 81.2
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 1.8e-267 925.6 557 80.4
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 1.5e-266 922.5 557 80.1
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 4.4e-266 921.0 559 80.9
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 5.7e-266 920.6 557 80.1
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 9.7e-266 919.8 557 79.5
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 1.3e-265 919.5 559 80.3
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.7e-265 919.1 557 80.1
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.8e-264 915.6 557 79.7
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 4.1e-264 914.4 557 79.7
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 7.0e-264 913.7 556 78.6
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 9.1e-264 913.3 557 79.5
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 2.0e-263 912.1 557 78.1
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 4.5e-263 911.0 557 78.5
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 4.5e-263 911.0 559 79.4
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 1.0e-262 909.8 559 79.8
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 1.0e-262 909.8 559 79.6
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 1.3e-262 909.4 557 78.8
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 1.7e-262 909.1 559 79.4
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 3.8e-262 907.9 557 78.6
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 5.0e-262 907.5 559 79.2
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 1.1e-261 906.4 559 77.8
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 1.1e-261 906.4 553 77.9
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 5.5e-261 904.0 565 77.9
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 9.4e-261 903.3 555 78.2
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 1.6e-260 902.5 557 77.7
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 1.0e-259 899.8 541 80.0
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 1.8e-259 899.0 559 79.1
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 2.3e-259 898.7 578 76.5
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 2.3e-259 898.7 557 78.3
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 5.2e-259 897.5 558 77.2
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 6.8e-259 897.1 558 77.1
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 6.8e-259 897.1 556 77.9
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 8.8e-259 896.7 555 78.2
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 1.2e-258 896.3 557 77.2
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 2.0e-258 895.6 559 77.1
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 2.0e-258 895.6 555 77.8
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 2.6e-258 895.2 557 77.4
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 3.4e-258 894.8 557 77.7
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 2.8e-257 891.7 557 76.1
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 6.3e-257 890.6 527 82.5
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 8.3e-257 890.2 557 77.7
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 1.4e-256 889.4 559 77.3
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 2.4e-256 888.6 559 76.4
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 4.1e-256 887.9 558 76.3
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 4.1e-256 887.9 557 76.1
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 5.4e-256 887.5 558 76.3
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 5.4e-256 887.5 553 76.3
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 1.2e-255 886.3 557 77.7
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 2.7e-255 885.2 532 81.8
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 1.3e-254 882.9 557 76.3
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 1.7e-254 882.5 575 74.8
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 8.6e-254 880.2 559 76.4
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 8.6e-254 880.2 559 76.4
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 8.6e-254 880.2 559 76.4
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.1e-253 879.8 584 73.5
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 1.9e-253 879.0 559 76.0
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 5.5e-253 877.5 557 77.6
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 5.5e-253 877.5 558 76.2
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 9.5e-253 876.7 558 75.4
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 9.5e-253 876.7 557 75.9
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 1.2e-252 876.3 557 76.1
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 2.3e-251 872.1 559 76.2
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 3.0e-251 871.7 541 78.2
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 4.0e-251 871.3 559 76.4
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 6.8e-251 870.5 559 76.2
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 1.2e-250 869.8 557 73.8
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 1.5e-250 869.4 557 77.0
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 4.4e-250 867.8 557 75.6
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 5.7e-250 867.5 559 74.8
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 5.7e-250 867.5 557 76.8
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 1.7e-249 865.9 564 74.8
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 6.3e-249 864.0 542 76.4
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 1.4e-248 862.8 555 75.1
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 1.8e-248 862.4 559 75.1
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 2.0e-247 859.0 559 75.0
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 1.1e-245 853.2 538 76.6
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 1.5e-245 852.8 560 74.1
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 7.3e-245 850.5 563 74.6
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 1.6e-244 849.4 560 74.1
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 1.6e-244 849.4 565 74.0
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 3.6e-244 848.2 565 73.8
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 3.0e-243 845.1 560 73.9
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 5.2e-243 844.3 577 72.3
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 8.9e-243 843.6 572 73.3
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 8.9e-243 843.6 560 73.6
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 1.5e-242 842.8 558 73.3
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 4.9e-241 837.8 560 72.7
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 6.4e-241 837.4 549 73.0
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 2.7e-239 832.0 553 73.2
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 3.5e-239 831.6 557 72.0
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.3e-238 828.9 600 69.5
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 1.2e-236 823.2 561 72.2
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 2.8e-236 822.0 552 72.1
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 4.7e-236 821.2 600 69.5
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 5.2e-235 817.8 565 72.2
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 3.7e-233 811.6 562 71.4
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 2.0e-231 805.8 561 73.3
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 2.7e-231 805.4 560 70.7
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 2.7e-231 805.4 542 73.1
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 9.5e-229 797.0 555 69.9
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 8.3e-225 783.9 488 76.2
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 1.3e-222 776.5 557 70.0
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 1.7e-222 776.2 550 67.8
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 2.3e-222 775.8 490 75.7
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 2.8e-220 768.8 557 66.8
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 1.4e-219 766.5 562 68.7
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 4.9e-217 758.1 545 69.9
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 9.6e-213 743.8 558 65.1
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 3.4e-210 735.3 545 68.4
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 9.3e-208 727.2 447 78.1
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 2.5e-205 719.2 549 61.9
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 3.5e-199 698.7 565 63.7
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.3e-182 643.7 550 56.0
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 5.1e-182 641.7 432 73.1
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 4.3e-181 638.6 545 57.6
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 6.9e-179 631.3 391 76.5
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 1.7e-177 626.7 391 78.0
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 5.7e-173 611.7 556 57.0
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 3.1e-171 605.9 550 54.2
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 2.7e-167 592.8 391 73.1
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 7.2e-160 568.2 486 56.0
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 2.0e-157 560.1 322 82.9
Oeu034830.1 Olea europaea HOM05D001656 ORTHO05D005043 1.2e-143 514.2 308 82.1
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 3.4e-141 506.1 290 81.0
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 3.7e-140 502.7 320 73.8
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 6.6e-137 491.9 323 73.1
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 8.0e-135 485.0 336 68.8
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 8.9e-126 454.9 270 82.6
AUR62034953 Chenopodium quinoa HOM05D001656 ORTHO05D005043 2.1e-111 407.1 287 67.9
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 2.8e-111 406.8 274 71.9
Oeu011631.2 Olea europaea HOM05D001656 ORTHO05D005043 2.1e-106 390.6 238 81.5
SpUn0078_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 4.4e-101 372.9 246 75.2
HPP92_019867 Vanilla planifolia HOM05D001656 ORTHO05D005043 2.4e-91 340.5 233 73.0
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 1.6e-90 337.8 240 68.8
CBR_g40751 Chara braunii HOM05D001656 ORTHO05D005043 9.3e-83 312.0 267 59.2
unitig_736.g22950 Utricularia gibba HOM05D001656 ORTHO05D005043 6.3e-55 219.5 141 75.9
Gohir.D06G145701 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.0e-52 212.2 137 73.7
Gorai.010G169800 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.7e-52 211.5 138 72.5
Gorai.013G041400 Gossypium raimondii HOM05D001656 ORTHO05D005043 3.8e-52 210.3 139 71.9
Gohir.D13G037000 Gossypium hirsutum HOM05D001656 ORTHO05D005043 5.0e-52 209.9 139 71.9
Atru.chr7.541 Acer truncatum HOM05D001656 ORTHO05D005043 1.2e-50 205.3 180 60.6
Gorai.010G172000 Gossypium raimondii HOM05D001656 ORTHO05D005043 6.3e-47 193.0 128 72.7
Dinv26408 Davidia involucrata HOM05D001656 ORTHO05D005043 4.1e-38 163.7 98 78.6
Dinv14696 Davidia involucrata HOM05D001656 ORTHO05D005043 6.5e-36 156.4 98 75.5
Atru.chr13.2595 Acer truncatum HOM05D001656 ORTHO05D005043 2.0e-24 118.2 106 59.4
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 1.1e-22 112.5 63 81.0
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 1.8e-22 111.7 63 79.4
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 7.0e-22 109.8 63 77.8
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 1.2e-21 109.0 71 69.0
Gohir.D08G147150 Gossypium hirsutum HOM05D001656 ORTHO05D005043 8.6e-20 102.8 63 76.2
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 8.6e-20 102.8 57 77.2
Gorai.004G152700 Gossypium raimondii HOM05D001656 ORTHO05D005043 4.2e-19 100.5 63 74.6
MCO10G102 Micromonas commoda HOM05D001656 ORTHO05D014814 8.0e-18 96.3 431 25.3
ECA247G1681 Erigeron canadensis HOM05D000257 ORTHO05D008527 1.0e-17 95.9 62 74.2
Cre07.g321100 Chlamydomonas reinhardtii HOM05D001656 ORTHO05D014814 2.6e-16 91.3 492 24.0
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 3.7e-15 87.4 245 28.2
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 1.2e-13 82.4 54 70.4
PRCOL_00006907 Prasinoderma coloniale HOM05D013921 ORTHO05D014814 1.0e-12 79.3 532 23.9
RcHm_v2.0_Chr2g0168121 Rosa chinensis HOM05D004344 ORTHO05D021344 4.7e-10 70.5 54 55.6
FvH4_5g33600 Fragaria vesca HOM05D001656 ORTHO05D005043 3.7e-07 60.8 49 61.2
FAN18G3130 Fragaria x ananassa HOM05D001656 ORTHO05D005043 3.7e-07 60.8 49 61.2
Thecc.03G047200 Theobroma cacao HOM05D000075 ORTHO05D408647 3.2e-06 57.8 64 57.8


User provided reference genes

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