Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G180.3 Capsicum annuum HOM05D002277 ORTHO05D001770 6.6e-51 203.8 103 100.0
PGSC0003DMG400026571 Solanum tuberosum HOM05D002277 ORTHO05D001770 2.1e-25 119.0 77 79.2
Sopen09g015550 Solanum pennellii HOM05D002277 ORTHO05D001770 6.2e-25 117.5 77 77.9
Nitab4.5_0007794g0020 Nicotiana tabacum HOM05D002277 ORTHO05D001770 1.3e-17 93.2 74 66.2
Gorai.005G006100 Gossypium raimondii HOM05D002277 ORTHO05D001770 9.9e-15 83.6 66 60.6
MSTRG.5517 Avicennia marina HOM05D002277 ORTHO05D001770 6.4e-14 80.9 68 60.3
Oeu024724.1 Olea europaea HOM05D002277 ORTHO05D001770 1.9e-13 79.3 70 62.9
ECA248G3625 Erigeron canadensis HOM05D002277 ORTHO05D001770 2.4e-13 79.0 68 61.8
COL.COLO4_30002 Corchorus olitorius HOM05D002277 ORTHO05D001770 1.2e-12 76.6 70 61.4
Lsat_1_v5_gn_5_148320 Lactuca sativa HOM05D002277 ORTHO05D001770 1.2e-12 76.6 78 57.7
Nn2g13334 Nelumbo nucifera HOM05D002277 ORTHO05D001770 1.2e-12 76.6 68 63.2
Gohir.A10G149200 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.6e-12 76.3 67 62.7
Gohir.D10G117600 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.6e-12 76.3 67 62.7
Duzib212G0079 Durio zibethinus HOM05D002277 ORTHO05D001770 2.7e-12 75.5 67 64.2
Duzib268G1048 Durio zibethinus HOM05D002277 ORTHO05D001770 2.7e-12 75.5 67 64.2
Gohir.D02G005400 Gossypium hirsutum HOM05D002277 ORTHO05D001770 2.7e-12 75.5 66 56.1
HanXRQChr11g0337191 Helianthus annuus HOM05D002277 ORTHO05D001770 4.6e-12 74.7 67 61.2
Migut.J00065 Erythranthe guttata HOM05D002277 ORTHO05D001770 7.8e-12 73.9 57 64.9
Oeu003223.1 Olea europaea HOM05D002277 ORTHO05D001770 7.8e-12 73.9 69 56.5
TAR636G1485 Trochodendron aralioides HOM05D002277 ORTHO05D001770 7.8e-12 73.9 68 60.3
VMungo0647G0912 Vigna mungo HOM05D002277 ORTHO05D001770 7.8e-12 73.9 70 60.0
TAR629G0672 Trochodendron aralioides HOM05D002277 ORTHO05D001770 2.3e-11 72.4 68 58.8
Oeu003236.1 Olea europaea HOM05D002277 ORTHO05D001770 3.0e-11 72.0 69 55.1
Actinidia29050 Actinidia chinensis HOM05D002277 ORTHO05D001770 3.9e-11 71.6 74 55.4
TAR633G2754 Trochodendron aralioides HOM05D002277 ORTHO05D001770 3.9e-11 71.6 68 58.8
arahy.Tifrunner.gnm1.ann1.H4MVMY Arachis hypogaea HOM05D002277 ORTHO05D001770 5.1e-11 71.2 72 55.6
Thecc.04G155300 Theobroma cacao HOM05D002277 ORTHO05D001770 6.6e-11 70.9 68 58.8
FvH4_6g10240 Fragaria vesca HOM05D002277 ORTHO05D001770 8.7e-11 70.5 85 48.2
FAN14G3640 Fragaria x ananassa HOM05D002277 ORTHO05D001770 8.7e-11 70.5 85 48.2
Manes.09G115500 Manihot esculenta HOM05D002277 ORTHO05D001770 8.7e-11 70.5 68 55.9
Phvul.008G218400 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 8.7e-11 70.5 70 57.1
TAR623G1362 Trochodendron aralioides HOM05D002277 ORTHO05D001770 1.1e-10 70.1 68 58.8
MSTRG.18959 Avicennia marina HOM05D002277 ORTHO05D001770 1.5e-10 69.7 68 51.5
FAN02G0282 Fragaria x ananassa HOM05D002277 ORTHO05D001770 1.5e-10 69.7 85 45.9
RcHm_v2.0_Chr3g0460991 Rosa chinensis HOM05D002277 ORTHO05D001770 1.5e-10 69.7 85 47.1
Prupe.6G289800 Prunus persica HOM05D002277 ORTHO05D001770 1.9e-10 69.3 62 58.1
Sabra06G0083400 Salix brachista HOM05D002277 ORTHO05D001770 1.9e-10 69.3 68 55.9
Potri.016G133200 Populus trichocarpa HOM05D002277 ORTHO05D001770 2.5e-10 68.9 68 54.4
Ciclev10033390m.g Citrus clementina HOM05D002277 ORTHO05D001770 3.3e-10 68.6 69 55.1
Gorai.011G129500 Gossypium raimondii HOM05D002277 ORTHO05D001770 3.3e-10 68.6 76 55.3
Sed0026001 Sechium edule HOM05D002277 ORTHO05D001770 3.3e-10 68.6 68 55.9
Potri.006G107200 Populus trichocarpa HOM05D002277 ORTHO05D001770 4.3e-10 68.2 68 54.4
Cc06_g00560 Coffea canephora HOM05D002277 ORTHO05D001770 5.6e-10 67.8 69 50.7
Glyma.14G053500 Glycine max HOM05D002277 ORTHO05D001770 5.6e-10 67.8 70 55.7
QL07p032796 Quercus lobata HOM05D002277 ORTHO05D001770 5.6e-10 67.8 99 47.5
Sabra04G0150900 Salix brachista HOM05D002277 ORTHO05D001770 5.6e-10 67.8 68 52.9
Gohir.A13G005650 Gossypium hirsutum HOM05D002277 ORTHO05D001770 7.3e-10 67.4 68 52.9
CiPaw.09G218200 Carya illinoinensis HOM05D002277 ORTHO05D001770 9.6e-10 67.0 76 50.0
Hma1.2p1_1052F.1_g252370 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 9.6e-10 67.0 68 54.4
Haze_21138 Corylus avellana HOM05D002277 ORTHO05D001770 1.3e-09 66.6 68 54.4
Haze_21144 Corylus avellana HOM05D002277 ORTHO05D001770 1.3e-09 66.6 68 54.4
Haze_21148 Corylus avellana HOM05D002277 ORTHO05D001770 1.3e-09 66.6 68 54.4
Glyma.02G259200 Glycine max HOM05D002277 ORTHO05D001770 1.3e-09 66.6 70 54.3
Oeu064877.1 Olea europaea HOM05D002277 ORTHO05D001770 1.3e-09 66.6 72 50.0
PGR004G0074 Punica granatum HOM05D002277 ORTHO05D001770 1.3e-09 66.6 66 56.1
PSO384G4841 Papaver somniferum HOM05D002277 ORTHO05D001770 1.6e-09 66.2 69 58.0
Cfa017063 Carpinus fangiana HOM05D002277 ORTHO05D001770 2.1e-09 65.9 68 52.9
Hma1.2p1_1240F.1_g269550 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 2.1e-09 65.9 84 54.8
CSS0032322 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 2.8e-09 65.5 84 52.4
Lalb_Chr04g0250281 Lupinus albus HOM05D002277 ORTHO05D001770 2.8e-09 65.5 69 52.2
COL.COLO4_03891 Corchorus olitorius HOM05D002277 ORTHO05D001770 3.6e-09 65.1 68 54.4
Gorai.013G006000 Gossypium raimondii HOM05D002277 ORTHO05D001770 3.6e-09 65.1 68 50.0
TPR.G20193 Trifolium pratense HOM05D002277 ORTHO05D001770 3.6e-09 65.1 70 52.9
ClCG11G005770 Citrullus lanatus HOM05D002277 ORTHO05D001770 4.8e-09 64.7 69 53.6
CsaV3_6G002200 Cucumis sativus L. HOM05D002277 ORTHO05D001770 4.8e-09 64.7 69 55.1
Gohir.D13G005350 Gossypium hirsutum HOM05D002277 ORTHO05D001770 4.8e-09 64.7 68 50.0
Lalb_Chr08g0231311 Lupinus albus HOM05D002277 ORTHO05D001770 4.8e-09 64.7 70 52.9
QL08p064469 Quercus lobata HOM05D002277 ORTHO05D001770 4.8e-09 64.7 72 48.6
CDE12G0812 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 6.2e-09 64.3 67 55.2
MELO3C019998.2 Cucumis melo HOM05D002277 ORTHO05D001770 8.1e-09 63.9 69 53.6
Medtr5g083970 Medicago truncatula HOM05D002277 ORTHO05D001770 8.1e-09 63.9 70 52.9
Thecc.10G174900 Theobroma cacao HOM05D002277 ORTHO05D001770 1.1e-08 63.5 68 52.9
Cc02_g05610 Coffea canephora HOM05D002277 ORTHO05D001770 1.4e-08 63.2 66 57.6
Atru.chr12.148 Acer truncatum HOM05D002277 ORTHO05D001770 1.8e-08 62.8 76 46.1
CSS0000970 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 1.8e-08 62.8 69 52.2
Manes.08G172400 Manihot esculenta HOM05D002277 ORTHO05D001770 1.8e-08 62.8 68 54.4
ClCG04G006490 Citrullus lanatus HOM05D002277 ORTHO05D001770 2.4e-08 62.4 68 51.5
Duzib128G0618 Durio zibethinus HOM05D002277 ORTHO05D001770 2.4e-08 62.4 68 51.5
CDE04G2385 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 4.0e-08 61.6 67 52.2
Potri.013G083101 Populus trichocarpa HOM05D002277 ORTHO05D001770 4.0e-08 61.6 68 50.0
CSS0043215 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 5.3e-08 61.2 68 51.5
Cpa.g.sc19.91 Carica papaya HOM05D002277 ORTHO05D001770 5.3e-08 61.2 74 52.7
DCAR_028908 Daucus carota HOM05D002277 ORTHO05D001770 5.3e-08 61.2 57 59.6
Manes.07G138400 Manihot esculenta HOM05D002277 ORTHO05D001770 5.3e-08 61.2 66 50.0
Nitab4.5_0000263g0230 Nicotiana tabacum HOM05D002277 ORTHO05D001770 5.3e-08 61.2 95 46.3
Nitab4.5_0004650g0010 Nicotiana tabacum HOM05D002277 ORTHO05D001770 5.3e-08 61.2 95 46.3
CDE07G2070 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 6.9e-08 60.8 74 41.9
Psat7g229920 Pisum sativum HOM05D002277 ORTHO05D001770 9.0e-08 60.5 75 53.3
HPP92_013855 Vanilla planifolia HOM05D002277 ORTHO05D001770 9.0e-08 60.5 55 56.4
Actinidia33883 Actinidia chinensis HOM05D002277 ORTHO05D001770 1.2e-07 60.1 91 45.1
MBI15_g33145_MAGBIO Magnolia biondii HOM05D002277 ORTHO05D001770 1.2e-07 60.1 68 52.9
CDE04G2321 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 1.5e-07 59.7 74 40.5
FAN10G1465 Fragaria x ananassa HOM05D002277 ORTHO05D001770 1.5e-07 59.7 63 54.0
Gohir.A02G005000 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.5e-07 59.7 68 50.0
LjContig00357g0012454 Lotus japonicus HOM05D002277 ORTHO05D001770 1.5e-07 59.7 73 45.2
TAR287G0001 Trochodendron aralioides HOM05D002277 ORTHO05D001770 1.5e-07 59.7 72 47.2
MELO3C026052.2 Cucumis melo HOM05D002277 ORTHO05D001770 2.0e-07 59.3 68 50.0
HPP92_013870 Vanilla planifolia HOM05D002277 ORTHO05D001770 2.0e-07 59.3 53 56.6
ATR0681G220 Amborella trichopoda HOM05D002277 ORTHO05D001770 2.6e-07 58.9 68 47.1
Ca_24067_v3 Cicer arietinum L. HOM05D002277 ORTHO05D001770 2.6e-07 58.9 65 56.9
Ciclev10012858m.g Citrus clementina HOM05D002277 ORTHO05D001770 2.6e-07 58.9 65 50.8
Medtr4g029130 Medicago truncatula HOM05D002277 ORTHO05D001770 2.6e-07 58.9 75 52.0
FAN03G3432 Fragaria x ananassa HOM05D002277 ORTHO05D001770 3.4e-07 58.5 63 52.4
SGA_v2.0_scaffold85G26651 Striga asiatica HOM05D002277 ORTHO05D001770 3.4e-07 58.5 50 56.0
AT5G01790 Arabidopsis thaliana HOM05D010646 ORTHO05D001770 4.5e-07 58.2 69 46.4
CiPaw.01G304400 Carya illinoinensis HOM05D002277 ORTHO05D001770 4.5e-07 58.2 61 54.1
FvH4_7g25590 Fragaria vesca HOM05D002277 ORTHO05D001770 4.5e-07 58.2 63 52.4
Sed0016478 Sechium edule HOM05D002277 ORTHO05D001770 4.5e-07 58.2 59 52.5
Carub.0006s0004 Capsella rubella HOM05D010646 ORTHO05D001770 5.8e-07 57.8 78 41.0
Eucgr.J00136 Eucalyptus grandis HOM05D002277 ORTHO05D001770 5.8e-07 57.8 71 47.9
Glyma.11G235700 Glycine max HOM05D002277 ORTHO05D001770 5.8e-07 57.8 71 46.5
Medtr3g072360 Medicago truncatula HOM05D002277 ORTHO05D001770 5.8e-07 57.8 68 48.5
TPR.G649 Trifolium pratense HOM05D002277 ORTHO05D001770 5.8e-07 57.8 70 47.1
CANSAT56G3800 Cannabis sativa HOM05D002277 ORTHO05D001770 7.6e-07 57.4 63 46.0
Cfa001229 Carpinus fangiana HOM05D002277 ORTHO05D001770 7.6e-07 57.4 62 51.6
FAN06G1120 Fragaria x ananassa HOM05D002277 ORTHO05D001770 7.6e-07 57.4 63 52.4
Phvul.008G086700 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 7.6e-07 57.4 65 55.4
Psat5g132120 Pisum sativum HOM05D002277 ORTHO05D001770 7.6e-07 57.4 70 47.1
Oeu058656.1 Olea europaea HOM05D002277 ORTHO05D001770 9.9e-07 57.0 73 50.7
Peaxi162Scf00464g00005 Petunia axillaris HOM05D002277 ORTHO05D001770 9.9e-07 57.0 67 56.7
Phvul.010G067300 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 9.9e-07 57.0 65 53.8
RcHm_v2.0_Chr1g0371651 Rosa chinensis HOM05D002277 ORTHO05D001770 9.9e-07 57.0 68 52.9
EL10Ac7g17051 Beta vulgaris HOM05D002277 ORTHO05D001770 1.3e-06 56.6 67 47.8
VMungo1383G3736 Vigna mungo HOM05D002277 ORTHO05D001770 1.3e-06 56.6 65 53.8
Zm00001eb282060 Zea mays HOM05D002277 ORTHO05D001770 1.3e-06 56.6 61 49.2
Lj2C62G11 Lonicera japonica HOM05D002277 ORTHO05D001770 1.7e-06 56.2 62 51.6
Peaxi162Scf00167g00134 Petunia axillaris HOM05D002277 ORTHO05D001770 1.7e-06 56.2 63 52.4
Sabra13G0071200 Salix brachista HOM05D002277 ORTHO05D001770 1.7e-06 56.2 67 46.3
Sabra13G0072000 Salix brachista HOM05D002277 ORTHO05D001770 1.7e-06 56.2 67 46.3
Ca_19777_v3 Cicer arietinum L. HOM05D002277 ORTHO05D001770 2.2e-06 55.8 65 52.3
Os05g0165500 Oryza sativa ssp. japonica HOM05D002277 ORTHO05D001770 2.2e-06 55.8 63 49.2
Prupe.2G261100 Prunus persica HOM05D002277 ORTHO05D001770 2.2e-06 55.8 58 53.4
VMungo0331G0789 Vigna mungo HOM05D002277 ORTHO05D001770 2.2e-06 55.8 65 53.8
VMungo1383G0121 Vigna mungo HOM05D002277 ORTHO05D001770 2.2e-06 55.8 70 47.1
AL6G10240 Arabidopsis lyrata HOM05D010646 ORTHO05D001770 2.9e-06 55.5 72 43.1
Glyma.18G021200 Glycine max HOM05D002277 ORTHO05D001770 2.9e-06 55.5 70 45.7
Rhsim09G0183700 Rhododendron simsii HOM05D002277 ORTHO05D001770 3.8e-06 55.1 68 55.9
Ah.08g209750 Amaranthus hybridus HOM05D002277 ORTHO05D001770 4.9e-06 54.7 50 52.0
TWI73G0449 Tripterygium wilfordii HOM05D002277 ORTHO05D001770 4.9e-06 54.7 70 45.7
Glyma.09G277500 Glycine max HOM05D002277 ORTHO05D001770 6.4e-06 54.3 65 52.3
Lj3g0001226 Lotus japonicus HOM05D002277 ORTHO05D001770 6.4e-06 54.3 65 53.8
Lalb_Chr19g0124091 Lupinus albus HOM05D002277 ORTHO05D001770 6.4e-06 54.3 80 45.0
Os01g0166500 Oryza sativa ssp. japonica HOM05D002277 ORTHO05D001770 6.4e-06 54.3 58 53.4
Phvul.005G105700 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 6.4e-06 54.3 82 47.6
Atru.chr8.2372 Acer truncatum HOM05D002277 ORTHO05D001770 8.4e-06 53.9 53 50.9
Glyma.18G211300 Glycine max HOM05D002277 ORTHO05D001770 8.4e-06 53.9 65 52.3
Psat3g121440 Pisum sativum HOM05D002277 ORTHO05D001770 8.4e-06 53.9 65 52.3
Sopen05g030830 Solanum pennellii HOM05D002277 ORTHO05D001770 8.4e-06 53.9 62 46.8
TPR.G4419 Trifolium pratense HOM05D002277 ORTHO05D001770 8.4e-06 53.9 65 52.3
Zm00001eb345950 Zea mays HOM05D002277 ORTHO05D001770 8.4e-06 53.9 61 45.9


User provided reference genes

Program Settings