Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 8.9e-145 516.9 263 100.0
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 2.5e-131 472.2 238 97.1
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 5.6e-131 471.1 236 97.5
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 7.4e-131 470.7 236 97.5
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 2.8e-130 468.8 236 96.6
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 1.5e-128 463.0 236 95.3
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 3.0e-124 448.7 236 90.3
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 4.3e-123 444.9 229 94.3
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 5.6e-123 444.5 236 89.0
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 4.8e-122 441.4 236 88.6
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 1.1e-121 440.3 236 88.6
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 1.4e-121 439.9 236 88.1
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 4.0e-121 438.3 233 88.8
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 6.9e-121 437.6 236 87.7
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 9.0e-121 437.2 236 87.3
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 1.5e-120 436.4 236 87.3
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 1.3e-119 433.3 236 86.9
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 2.2e-119 432.6 233 88.0
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 4.9e-119 431.4 233 87.6
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 5.5e-118 427.9 235 86.4
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 1.2e-117 426.8 233 85.8
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 1.6e-117 426.4 233 86.3
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 1.6e-117 426.4 233 86.3
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 2.1e-117 426.0 235 86.0
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 3.5e-117 425.2 233 86.3
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 4.6e-117 424.9 235 85.5
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 4.6e-117 424.9 233 85.8
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 1.0e-116 423.7 233 85.4
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 1.3e-116 423.3 233 87.6
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 1.8e-116 422.9 233 85.0
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 1.8e-116 422.9 236 85.2
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 2.3e-116 422.5 233 84.1
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 2.3e-116 422.5 231 85.7
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 5.1e-116 421.4 233 87.6
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 5.1e-116 421.4 233 84.5
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 6.7e-116 421.0 233 85.8
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 8.7e-116 420.6 233 84.5
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 8.7e-116 420.6 256 79.7
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 1.1e-115 420.2 230 86.1
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 1.1e-115 420.2 235 86.4
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 1.5e-115 419.9 236 84.3
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 1.5e-115 419.9 233 85.4
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 1.9e-115 419.5 233 84.1
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 2.5e-115 419.1 233 85.0
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 2.5e-115 419.1 236 85.6
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 3.3e-115 418.7 236 84.3
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 4.3e-115 418.3 235 86.0
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 4.3e-115 418.3 233 85.0
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 5.7e-115 417.9 233 84.1
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 5.7e-115 417.9 233 85.4
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 7.4e-115 417.5 238 85.3
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 7.4e-115 417.5 233 85.0
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 7.4e-115 417.5 233 84.5
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 9.6e-115 417.2 230 87.4
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 1.6e-114 416.4 233 83.7
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 2.1e-114 416.0 233 85.8
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 2.1e-114 416.0 233 84.5
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 2.8e-114 415.6 241 82.2
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 4.8e-114 414.8 233 85.4
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 4.8e-114 414.8 233 85.4
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 6.3e-114 414.5 233 82.8
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 6.3e-114 414.5 254 81.1
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 8.2e-114 414.1 233 83.3
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 8.2e-114 414.1 230 87.0
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 1.4e-113 413.3 233 84.1
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 1.4e-113 413.3 233 84.1
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 1.4e-113 413.3 233 85.0
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 2.4e-113 412.5 230 86.5
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 3.1e-113 412.1 224 87.9
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 4.1e-113 411.8 233 84.5
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 4.1e-113 411.8 233 84.5
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 5.3e-113 411.4 233 84.1
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 6.9e-113 411.0 233 84.5
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 6.9e-113 411.0 233 84.5
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 6.9e-113 411.0 233 82.8
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 1.2e-112 410.2 233 84.1
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 1.5e-112 409.8 233 84.1
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 2.6e-112 409.1 233 84.1
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 2.6e-112 409.1 233 84.1
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 2.6e-112 409.1 224 87.5
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 4.5e-112 408.3 236 82.6
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 7.6e-112 407.5 233 84.1
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 7.6e-112 407.5 232 83.2
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 1.0e-111 407.1 242 81.8
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 3.8e-111 405.2 231 84.4
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 1.1e-110 403.7 233 83.3
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 2.5e-110 402.5 233 84.1
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 5.5e-110 401.4 280 72.5
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 2.1e-109 399.4 280 71.8
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 8.7e-108 394.0 236 78.4
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 8.2e-106 387.5 233 79.8
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 5.3e-105 384.8 221 83.3
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 9.1e-105 384.0 233 79.0
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 1.2e-104 383.6 230 80.0
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 4.5e-104 381.7 241 78.8
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 2.5e-102 375.9 228 75.9
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 8.2e-98 360.9 241 74.7
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 9.1e-97 357.5 227 74.9
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 1.2e-96 357.1 226 72.6
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 1.6e-93 346.7 199 83.4
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 4.7e-93 345.1 223 74.0
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 1.7e-90 336.7 235 70.6
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 1.4e-89 333.6 233 70.0
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 1.7e-87 326.6 235 70.6
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 3.2e-86 322.4 222 68.0
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 4.2e-86 322.0 194 80.9
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 8.0e-85 317.8 183 80.9
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 3.1e-81 305.8 190 77.4
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 9.1e-81 304.3 272 58.8
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 1.6e-77 293.5 171 83.0
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 1.3e-74 283.9 209 67.9
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 7.7e-72 274.6 183 73.2
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 2.3e-71 273.1 224 55.8
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 3.8e-71 272.3 198 72.2
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 2.0e-64 250.0 233 52.4
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 5.0e-63 245.4 135 85.2
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 3.7e-58 229.2 136 78.7
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 2.4e-57 226.5 195 63.6
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 4.3e-54 215.7 123 83.7
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 4.9e-50 202.2 120 81.7
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 1.4e-49 200.7 233 50.2
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 3.6e-45 186.0 211 49.3
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 1.5e-43 180.6 99 83.8
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 2.2e-42 176.8 99 81.8
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 1.6e-40 170.6 98 80.6
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 2.1e-40 170.2 158 60.1
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 2.7e-40 169.9 83 95.2
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 2.5e-38 163.3 98 78.6
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 1.1e-36 157.9 241 34.9
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 6.8e-36 155.2 98 82.7
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 1.8e-20 104.0 103 54.4
SEGI_35638 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.3e-18 97.8 69 63.8
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 5.1e-15 85.9 137 43.1
Hma1.2p1_0212F.1_g090110 Hydrangea macrophylla HOM05D005684 ORTHO05D048316 1.6e-13 80.9 44 77.3
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 1.5e-11 74.3 56 62.5
GSVIVG01037618001 Vitis vinifera HOM05D005684 ORTHO05D048316 7.1e-09 65.5 30 93.3
AagrBONN_evm.TU.Sc2ySwM_340.2023 Anthoceros agrestis HOM05D005684 ORTHO05D007427 1.9e-06 57.4 39 66.7
Sabra11G0123400 Salix brachista HOM05D005684 ORTHO05D349101 1.9e-06 57.4 41 73.2


User provided reference genes

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