Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 1.4e-88 329.7 186 100.0
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 1.2e-74 283.5 187 88.2
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 3.8e-73 278.5 187 86.6
Solyc12g007240.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 1.4e-59 233.4 142 84.5
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 2.0e-58 229.6 170 74.7
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 8.8e-46 187.6 190 67.4
Nitab4.5_0014820g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 2.0e-45 186.4 138 73.9
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 9.4e-40 167.5 194 56.2
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 4.1e-35 152.1 197 53.3
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 3.5e-34 149.1 196 59.2
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 2.2e-33 146.4 197 52.8
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 6.5e-33 144.8 194 53.1
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 1.5e-32 143.7 191 50.8
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 3.2e-32 142.5 193 57.0
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 5.5e-32 141.7 172 54.1
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 9.4e-32 141.0 200 56.0
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 9.4e-32 141.0 190 51.1
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 3.6e-31 139.0 170 51.8
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 3.6e-31 139.0 197 51.8
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 8.0e-31 137.9 196 49.0
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 8.0e-31 137.9 190 53.7
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 1.0e-30 137.5 170 49.4
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 1.0e-30 137.5 193 51.8
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 3.0e-30 136.0 202 50.5
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 3.0e-30 136.0 202 50.5
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 2.0e-29 133.3 179 53.6
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 2.6e-29 132.9 191 50.3
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 1.3e-28 130.6 174 54.6
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 2.8e-28 129.4 175 51.4
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 2.8e-28 129.4 173 52.0
Nitab4.5_0001004g0030 Nicotiana tabacum HOM05D003644 ORTHO05D004305 8.3e-28 127.9 125 64.0
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 1.4e-27 127.1 172 50.0
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 1.8e-27 126.7 193 46.1
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 2.4e-27 126.3 201 55.2
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 2.4e-27 126.3 170 53.5
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 3.1e-27 125.9 196 45.4
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 3.1e-27 125.9 184 52.2
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 7.0e-27 124.8 191 49.7
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 1.2e-26 124.0 198 48.0
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 1.3e-25 120.6 154 49.4
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 1.3e-25 120.6 194 46.9
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 2.9e-25 119.4 178 47.2
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 5.0e-25 118.6 175 46.9
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 6.6e-25 118.2 200 54.5
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 8.6e-25 117.9 197 53.8
Nitab4.5_0002431g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 1.5e-24 117.1 90 72.2
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 1.5e-24 117.1 177 46.9
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 1.9e-24 116.7 206 52.4
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 3.3e-24 115.9 188 47.9
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 4.2e-24 115.5 170 51.8
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 5.5e-24 115.2 198 46.0
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 7.2e-24 114.8 192 48.4
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 1.2e-23 114.0 175 52.0
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 1.2e-23 114.0 179 51.4
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 1.2e-23 114.0 176 50.6
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 2.1e-23 113.2 201 48.3
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 4.7e-23 112.1 165 44.8
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 4.7e-23 112.1 165 45.5
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 4.7e-23 112.1 200 47.5
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 4.7e-23 112.1 178 47.2
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 4.7e-23 112.1 124 58.9
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 8.0e-23 111.3 190 47.9
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 8.0e-23 111.3 176 51.7
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 1.4e-22 110.5 167 46.7
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 1.8e-22 110.2 166 44.6
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 4.0e-22 109.0 198 51.0
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 5.2e-22 108.6 195 45.1
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 8.9e-22 107.8 191 49.2
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 2.0e-21 106.7 166 45.2
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 3.4e-21 105.9 198 44.9
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 3.4e-21 105.9 173 49.1
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 5.7e-21 105.1 192 46.9
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 5.7e-21 105.1 191 45.5
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 5.7e-21 105.1 200 47.0
Solyc07g018370.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 7.5e-21 104.8 117 56.4
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 2.8e-20 102.8 198 46.0
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 3.7e-20 102.4 186 46.2
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 4.9e-20 102.1 198 46.5
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 1.4e-19 100.5 204 45.6
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 3.1e-19 99.4 174 47.7
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 7.0e-19 98.2 170 45.9
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 9.2e-19 97.8 194 43.3
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 1.2e-18 97.4 180 45.0
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 1.2e-18 97.4 208 44.7
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.0e-18 96.7 178 46.1
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 2.7e-18 96.3 147 50.3
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 2.7e-18 96.3 178 46.1
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.7e-18 96.3 178 44.4
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 3.5e-18 95.9 190 48.4
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 7.8e-18 94.7 176 45.5
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 1.0e-17 94.4 184 42.9
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.0e-17 94.4 178 43.8
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 1.0e-17 94.4 169 45.0
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 1.3e-17 94.0 198 47.5
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 1.3e-17 94.0 129 47.3
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 1.7e-17 93.6 176 41.5
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 1.7e-17 93.6 173 45.7
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 1.7e-17 93.6 168 44.0
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 2.3e-17 93.2 196 43.4
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.9e-17 92.8 189 41.3
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.9e-17 92.8 189 41.3
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 3.9e-17 92.4 168 45.2
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 3.9e-17 92.4 191 41.9
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 3.9e-17 92.4 191 41.9
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 3.9e-17 92.4 191 41.9
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 5.0e-17 92.0 180 43.9
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 6.6e-17 91.7 177 44.6
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 1.1e-16 90.9 177 47.5
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 2.5e-16 89.7 191 41.4
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 2.5e-16 89.7 191 41.4
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 2.5e-16 89.7 179 45.3
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 3.3e-16 89.4 193 39.9
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 4.3e-16 89.0 188 45.7
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 5.6e-16 88.6 192 43.2
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 7.3e-16 88.2 173 44.5
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 7.3e-16 88.2 173 44.5
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 7.3e-16 88.2 173 44.5
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 7.3e-16 88.2 173 44.5
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 9.5e-16 87.8 173 43.9
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.6e-15 87.0 182 42.9
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 4.7e-15 85.5 171 44.4
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 8.0e-15 84.7 169 41.4
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 1.4e-14 84.0 192 42.7
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 1.4e-14 84.0 123 58.5
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 2.3e-14 83.2 192 42.7
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 3.1e-14 82.8 174 40.8
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 3.1e-14 82.8 209 43.1
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 6.8e-14 81.6 118 48.3
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 6.8e-14 81.6 185 38.9
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 8.9e-14 81.3 192 42.2
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 8.9e-14 81.3 150 49.3
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.5e-13 80.5 192 38.5
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 2.6e-13 79.7 168 42.3
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 2.6e-13 79.7 126 44.4
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 2.6e-13 79.7 164 42.7
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 3.4e-13 79.3 178 41.6
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 5.8e-13 78.6 136 44.1
Oeu018442.1 Olea europaea HOM05D003644 ORTHO05D004305 3.7e-12 75.9 74 62.2
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 6.4e-12 75.1 154 42.9
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 8.3e-12 74.7 173 35.8
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 3.2e-11 72.8 102 49.0
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 5.4e-11 72.0 153 41.8
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 7.0e-11 71.6 172 36.6
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 1.6e-10 70.5 131 38.9
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 6.0e-10 68.6 162 38.3
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 1.3e-09 67.4 151 40.4
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 1.7e-09 67.0 146 41.1
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 2.3e-09 66.6 188 34.6
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 3.9e-09 65.9 171 36.8
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 3.9e-09 65.9 168 38.1
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 3.9e-09 65.9 165 40.0
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 6.6e-09 65.1 167 40.1
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 8.6e-09 64.7 126 40.5
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 8.6e-09 64.7 100 49.0
Zm00001eb360290 Zea mays HOM05D003644 ORTHO05D004305 1.5e-08 63.9 172 38.4
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 2.5e-08 63.2 168 38.7
unitig_578.g15927 Utricularia gibba HOM05D003644 ORTHO05D004305 2.5e-08 63.2 97 41.2
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 3.3e-08 62.8 154 39.6
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 3.3e-08 62.8 170 41.8
Sc08g0007700 Simmondsia chinensis HOM05D003644 ORTHO05D004305 4.3e-08 62.4 158 34.8
Psat7g014640 Pisum sativum HOM05D003644 ORTHO05D004305 1.2e-07 60.8 164 37.8
Zm00001eb343410 Zea mays HOM05D003644 ORTHO05D004305 1.2e-07 60.8 183 35.5
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 2.1e-07 60.1 125 40.0
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 2.1e-07 60.1 125 40.0
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 6.2e-07 58.5 68 60.3
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 1.4e-06 57.4 153 37.9
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 3.1e-06 56.2 183 36.6
AL7G23640 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 4.0e-06 55.8 117 44.4
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 8.9e-06 54.7 72 55.6


User provided reference genes

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