Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G177.15 Capsicum annuum HOM05D005764 ORTHO05D006600 4.1e-219 765.4 538 100.0
PGSC0003DMG400017401 Solanum tuberosum HOM05D005764 ORTHO05D006600 3.0e-153 546.6 537 76.4
Sopen07g023950 Solanum pennellii HOM05D005764 ORTHO05D006600 1.4e-150 537.7 533 76.2
Solyc07g045400.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 2.4e-86 324.3 195 79.0
CAN.G805.2 Capsicum annuum HOM05D005764 ORTHO05D006600 2.9e-84 317.4 377 64.5
Nitab4.5_0006992g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 8.6e-68 262.7 371 67.9
Nitab4.5_0005425g0010 Nicotiana tabacum HOM05D005764 ORTHO05D006600 1.2e-66 258.8 371 68.2
Dinv21306 Davidia involucrata HOM05D005764 ORTHO05D006600 2.3e-49 201.4 252 43.7
Lj1C797T15 Lonicera japonica HOM05D005764 ORTHO05D006600 4.1e-46 190.7 241 45.6
Lj1C797T16 Lonicera japonica HOM05D005764 ORTHO05D006600 4.1e-46 190.7 241 45.6
Actinidia07859 Actinidia chinensis HOM05D005764 ORTHO05D006600 6.6e-44 183.3 252 41.7
Solyc07g045410.2 Solanum lycopersicum HOM05D005764 ORTHO05D006600 6.6e-44 183.3 318 68.6
CSS0031853 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 2.8e-42 177.9 252 40.1
CSS0045653 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 3.6e-42 177.6 249 41.0
Nitab4.5_0000663g0160 Nicotiana tabacum HOM05D005764 ORTHO05D006600 1.4e-41 175.6 239 38.1
Rhsim06G0177300 Rhododendron simsii HOM05D005764 ORTHO05D006600 6.8e-41 173.3 246 39.8
CSS0040489 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 2.6e-40 171.4 222 40.5
vmacro12075 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 3.4e-40 171.0 245 38.0
Nitab4.5_0008892g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 4.4e-40 170.6 239 37.7
Haze_12617 Corylus avellana HOM05D005764 ORTHO05D006600 7.5e-40 169.9 255 38.8
GSVIVG01030107001 Vitis vinifera HOM05D005764 ORTHO05D006600 9.9e-40 169.5 225 41.8
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 3.7e-39 167.5 218 39.9
Haze_12606 Corylus avellana HOM05D005764 ORTHO05D006600 3.7e-39 167.5 255 38.4
FvH4_5g09340 Fragaria vesca HOM05D005764 ORTHO05D006600 1.9e-38 165.2 229 40.2
Cfa014216 Carpinus fangiana HOM05D005764 ORTHO05D006600 4.1e-38 164.1 255 38.0
TAR362G1049 Trochodendron aralioides HOM05D005764 ORTHO05D006600 5.4e-38 163.7 223 39.0
FAN18G2453 Fragaria x ananassa HOM05D005764 ORTHO05D006600 7.1e-38 163.3 229 39.7
QL04p067861 Quercus lobata HOM05D005764 ORTHO05D006600 2.7e-37 161.4 210 41.0
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 7.8e-37 159.8 216 38.0
Rhsim08G0196300 Rhododendron simsii HOM05D005764 ORTHO05D006600 1.7e-36 158.7 238 40.8
Haze_07107 Corylus avellana HOM05D005764 ORTHO05D006600 5.1e-36 157.1 217 39.6
Thecc.01G197100 Theobroma cacao HOM05D005764 ORTHO05D006600 5.1e-36 157.1 222 37.4
Dinv13731 Davidia involucrata HOM05D005764 ORTHO05D006600 1.5e-35 155.6 221 40.7
RcHm_v2.0_Chr7g0188811 Rosa chinensis HOM05D005764 ORTHO05D006600 1.5e-35 155.6 218 38.5
MSTRG.22851 Avicennia marina HOM05D005764 ORTHO05D006600 3.3e-35 154.5 218 39.4
Manes.06G126050 Manihot esculenta HOM05D005764 ORTHO05D006600 4.3e-35 154.1 210 41.0
Ah.11g046810 Amaranthus hybridus HOM05D005764 ORTHO05D006600 5.6e-35 153.7 244 37.7
TAR633G1425 Trochodendron aralioides HOM05D005764 ORTHO05D006600 5.6e-35 153.7 236 37.3
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 7.3e-35 153.3 244 36.5
PGSC0003DMG400014245 Solanum tuberosum HOM05D005764 ORTHO05D006600 9.6e-35 152.9 201 41.3
SalBow7G2732 Salvia bowleyana HOM05D005764 ORTHO05D006600 4.7e-34 150.6 239 37.7
Atru.chr6.3404 Acer truncatum HOM05D005764 ORTHO05D006600 8.1e-34 149.8 256 36.3
Cpa.g.sc211.34 Carica papaya HOM05D005764 ORTHO05D006600 1.1e-33 149.4 218 38.5
vmacro19173 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 1.4e-33 149.1 241 38.2
TWI14G0891 Tripterygium wilfordii HOM05D005764 ORTHO05D006600 1.8e-33 148.7 224 39.7
QL04p061529 Quercus lobata HOM05D005764 ORTHO05D006600 4.0e-33 147.5 224 39.3
Oeu005567.3 Olea europaea HOM05D005764 ORTHO05D006600 5.2e-33 147.1 230 37.4
Ciclev10033858m.g Citrus clementina HOM05D005764 ORTHO05D006600 1.5e-32 145.6 198 39.9
DCAR_016460 Daucus carota HOM05D005764 ORTHO05D006600 2.0e-32 145.2 223 36.8
SGA_v2.0_scaffold74G24732 Striga asiatica HOM05D005764 ORTHO05D006600 2.0e-32 145.2 210 37.6
ClCG02G014020 Citrullus lanatus HOM05D005764 ORTHO05D006600 7.6e-32 143.3 215 36.7
Dinv18433 Davidia involucrata HOM05D005764 ORTHO05D006600 7.6e-32 143.3 199 40.2
Sc04g0000230 Simmondsia chinensis HOM05D005764 ORTHO05D006600 1.3e-31 142.5 210 38.6
AUR62034761 Chenopodium quinoa HOM05D005764 ORTHO05D006600 1.7e-31 142.1 194 41.8
AUR62041690 Chenopodium quinoa HOM05D005764 ORTHO05D006600 1.7e-31 142.1 194 41.8
Migut.I00614 Erythranthe guttata HOM05D005764 ORTHO05D006600 1.7e-31 142.1 219 36.1
Sopen03g037190 Solanum pennellii HOM05D005764 ORTHO05D006600 1.7e-31 142.1 201 38.8
THA.LOC104804672 Tarenaya hassleriana HOM05D005764 ORTHO05D006600 1.7e-31 142.1 209 36.8
PSO017G0179 Papaver somniferum HOM05D005764 ORTHO05D006600 2.2e-31 141.7 227 35.2
Aqoxy7G02956 Aquilegia oxysepala HOM05D005764 ORTHO05D006600 2.9e-31 141.4 252 34.5
DCAR_021406 Daucus carota HOM05D005764 ORTHO05D006600 3.8e-31 141.0 244 34.8
Solyc03g118280.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 6.4e-31 140.2 201 38.8
Atru.chr6.1906 Acer truncatum HOM05D005764 ORTHO05D006600 8.4e-31 139.8 230 37.0
QL11p027136 Quercus lobata HOM05D005764 ORTHO05D006600 8.4e-31 139.8 226 38.1
Nn7g38163 Nelumbo nucifera HOM05D005764 ORTHO05D006600 1.9e-30 138.7 253 33.2
MD14G1148300 Malus domestica HOM05D005764 ORTHO05D006600 3.2e-30 137.9 218 35.8
AUR62009526 Chenopodium quinoa HOM05D005764 ORTHO05D006600 4.2e-30 137.5 196 40.3
Ciclev10010938m.g Citrus clementina HOM05D005764 ORTHO05D006600 5.4e-30 137.1 214 38.8
MD06G1131900 Malus domestica HOM05D005764 ORTHO05D006600 5.4e-30 137.1 218 36.7
CsaV3_5G006140 Cucumis sativus L. HOM05D005764 ORTHO05D006600 1.2e-29 136.0 210 35.7
Sed0013038 Sechium edule HOM05D005764 ORTHO05D006600 1.2e-29 136.0 205 36.1
Aa31LG11G1530 Aethionema arabicum HOM05D005764 ORTHO05D006600 3.5e-29 134.4 209 38.3
EL10Ac5g11299 Beta vulgaris HOM05D005764 ORTHO05D006600 4.6e-29 134.0 193 38.3
Gorai.003G116400 Gossypium raimondii HOM05D005764 ORTHO05D006600 1.0e-28 132.9 209 37.3
Lj1A1039T30 Lonicera japonica HOM05D005764 ORTHO05D006600 1.0e-28 132.9 195 36.9
Potri.015G105400 Populus trichocarpa HOM05D005764 ORTHO05D006600 1.0e-28 132.9 249 35.7
vmacro19172 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 4.3e-27 127.5 233 36.1
Lsat_1_v5_gn_4_84661 Lactuca sativa HOM05D005764 ORTHO05D006600 3.6e-26 124.4 224 34.4
Thhalv10003592m.g Eutrema salsugineum HOM05D005764 ORTHO05D006600 4.8e-26 124.0 208 38.0
Gohir.D03G110000 Gossypium hirsutum HOM05D005764 ORTHO05D006600 8.1e-26 123.2 210 35.7
BcaB02g09611 Brassica carinata HOM05D005764 ORTHO05D006600 1.1e-25 122.9 208 37.0
PGR042G2810 Punica granatum HOM05D005764 ORTHO05D006600 1.1e-25 122.9 212 34.0
Carub.0008s2268 Capsella rubella HOM05D005764 ORTHO05D006600 1.4e-25 122.5 208 37.5
HanXRQChr09g0273911 Helianthus annuus HOM05D005764 ORTHO05D006600 1.8e-25 122.1 231 35.1
CARHR275790 Cardamine hirsuta HOM05D005764 ORTHO05D006600 3.1e-25 121.3 208 38.0
Sp2g25170 Schrenkiella parvula HOM05D005764 ORTHO05D006600 5.3e-25 120.6 208 35.6
AT5G61990 Arabidopsis thaliana HOM05D005764 ORTHO05D006600 6.9e-25 120.2 203 36.0
AL8G38750 Arabidopsis lyrata HOM05D005764 ORTHO05D006600 1.5e-24 119.0 223 36.3
BolC3t18765H Brassica oleracea HOM05D005764 ORTHO05D006600 2.6e-24 118.2 208 37.0
HanXRQChr03g0075031 Helianthus annuus HOM05D005764 ORTHO05D006600 2.6e-24 118.2 238 33.6
C03p65110 Brassica napus HOM05D005764 ORTHO05D006600 3.4e-24 117.9 208 37.0
A06p28690 Brassica napus HOM05D005764 ORTHO05D006600 2.9e-23 114.8 200 37.0
ATR0317G130 Amborella trichopoda HOM05D005764 ORTHO05D006600 3.8e-23 114.4 240 31.2
BraA06t25809Z Brassica rapa HOM05D005764 ORTHO05D006600 3.8e-23 114.4 200 37.0
Prupe.5G142900 Prunus persica HOM05D005764 ORTHO05D006600 4.9e-23 114.0 221 33.0
Duzib205G1181 Durio zibethinus HOM05D005764 ORTHO05D006600 6.4e-23 113.6 185 37.8
QL04p006829 Quercus lobata HOM05D000056 ORTHO05D000019 2.4e-22 111.7 180 39.4
CDE05G2510 Ceratophyllum demersum HOM05D005764 ORTHO05D006600 9.3e-22 109.8 208 34.6
vmacro19171 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 2.1e-21 108.6 210 34.8
Atru.chr6.3419 Acer truncatum HOM05D005764 ORTHO05D006600 3.5e-21 107.8 252 31.3
Gohir.A03G056500 Gossypium hirsutum HOM05D005764 ORTHO05D006600 6.0e-21 107.1 192 34.9
Atru.chr6.3407 Acer truncatum HOM05D005764 ORTHO05D006600 2.5e-19 101.7 251 30.7
Atru.chr1.4150 Acer truncatum HOM05D005764 ORTHO05D006600 7.3e-19 100.1 176 37.5
RcHm_v2.0_Chr2g0162681 Rosa chinensis HOM05D005764 ORTHO05D006600 3.6e-18 97.8 130 39.2
Actinidia25528 Actinidia chinensis HOM05D005764 ORTHO05D006600 8.1e-18 96.7 140 39.3
Ciclev10014235m.g Citrus clementina HOM05D005764 ORTHO05D006600 1.4e-17 95.9 155 35.5
Os07g0300200 Oryza sativa ssp. japonica HOM05D005764 ORTHO05D006600 9.0e-17 93.2 204 29.4
HanXRQChr16g0498891 Helianthus annuus HOM05D005764 ORTHO05D006600 3.8e-15 87.8 227 30.0
CiPaw.11G052700 Carya illinoinensis HOM05D005764 ORTHO05D006600 3.0e-12 78.2 116 37.1
AUR62012653 Chenopodium quinoa HOM05D007956 ORTHO05D010152 1.1e-11 76.3 215 27.4
QL05p074803 Quercus lobata HOM05D007956 ORTHO05D010152 1.9e-11 75.5 212 26.4
TAR629G0629 Trochodendron aralioides HOM05D007956 ORTHO05D010152 1.9e-11 75.5 245 24.1
COL.COLO4_06641 Corchorus olitorius HOM05D007956 ORTHO05D010152 9.6e-11 73.2 227 26.0
Thecc.03G139200 Theobroma cacao HOM05D005764 ORTHO05D006600 1.3e-10 72.8 126 34.1
vmacro03705 Vaccinium macrocarpon HOM05D007956 ORTHO05D010152 1.3e-10 72.8 220 28.2
CDE05G0348 Ceratophyllum demersum HOM05D005764 ORTHO05D006600 2.1e-10 72.0 174 29.9
MELO3C011746.2 Cucumis melo HOM05D005764 ORTHO05D006600 2.1e-10 72.0 105 35.2
Sc17g0007100 Simmondsia chinensis HOM05D007956 ORTHO05D010152 2.1e-10 72.0 212 25.9
CiPaw.09G087900 Carya illinoinensis HOM05D007956 ORTHO05D010152 2.8e-10 71.6 212 24.1
CAN.G569.38 Capsicum annuum HOM05D007956 ORTHO05D010152 3.7e-10 71.2 242 26.0
ECA232G3323 Erigeron canadensis HOM05D005764 ORTHO05D006600 3.7e-10 71.2 129 34.1
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 6.2e-10 70.5 223 27.4
Ah.02g113700 Amaranthus hybridus HOM05D007763 ORTHO05D009537 1.1e-09 69.7 170 25.9
ECA248G1009 Erigeron canadensis HOM05D005764 ORTHO05D006600 2.4e-09 68.6 95 34.7
Cfa000267 Carpinus fangiana HOM05D007956 ORTHO05D010152 5.3e-09 67.4 212 23.6
Thecc.06G215000 Theobroma cacao HOM05D007956 ORTHO05D010152 6.9e-09 67.0 224 22.8
Haze_06747 Corylus avellana HOM05D007956 ORTHO05D010152 9.0e-09 66.6 215 24.7
ECA232G4944 Erigeron canadensis HOM05D000422 ORTHO05D006600 2.6e-08 65.1 81 37.0
RcHm_v2.0_Chr1g0325241 Rosa chinensis HOM05D005764 ORTHO05D006600 3.4e-08 64.7 76 47.4
EL10Ac8g19997 Beta vulgaris HOM05D007956 ORTHO05D010152 5.8e-08 63.9 213 24.9
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 1.7e-07 62.4 226 23.0
RcHm_v2.0_Chr7g0229441 Rosa chinensis HOM05D005764 ORTHO05D006600 1.4e-06 59.3 101 31.7
HPP92_025492 Vanilla planifolia HOM05D005764 ORTHO05D006600 1.4e-06 59.3 108 28.7
MD11G1144200 Malus domestica HOM05D007212 ORTHO05D009094 2.5e-06 58.5 209 24.9
Glyma.14G156100 Glycine max HOM05D007426 ORTHO05D009167 4.2e-06 57.8 165 27.9
SGA_v2.0_scaffold159G37611 Striga asiatica HOM05D007291 ORTHO05D009038 7.1e-06 57.0 222 26.6


User provided reference genes

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