Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1744.1 Capsicum annuum HOM05D005657 ORTHO05D007104 5.9e-216 753.8 356 100.0
PGSC0003DMG401013075 Solanum tuberosum HOM05D005657 ORTHO05D007104 1.2e-163 580.1 320 86.2
Sopen05g032420 Solanum pennellii HOM05D005657 ORTHO05D007104 4.4e-163 578.2 318 86.5
Solyc05g053950.4 Solanum lycopersicum HOM05D005657 ORTHO05D007104 5.4e-161 571.2 320 85.9
Nitab4.5_0000484g0050 Nicotiana tabacum HOM05D005657 ORTHO05D007104 9.9e-155 550.4 318 82.4
Cfa000932 Carpinus fangiana HOM05D005657 ORTHO05D007104 2.5e-118 429.5 319 65.5
Actinidia39582 Actinidia chinensis HOM05D005657 ORTHO05D007104 2.2e-117 426.4 316 65.8
Peaxi162Scf00394g00119 Petunia axillaris HOM05D005657 ORTHO05D007104 4.8e-117 425.2 255 81.2
SalBow8G0891 Salvia bowleyana HOM05D005657 ORTHO05D007104 1.5e-115 420.2 318 64.8
CiPaw.09G122400 Carya illinoinensis HOM05D005657 ORTHO05D007104 1.7e-114 416.8 322 63.0
Gohir.A05G147800 Gossypium hirsutum HOM05D005657 ORTHO05D007104 1.7e-114 416.8 321 64.8
Gorai.009G154400 Gossypium raimondii HOM05D005657 ORTHO05D007104 1.7e-114 416.8 321 64.5
Gohir.D05G150300 Gossypium hirsutum HOM05D005657 ORTHO05D007104 2.2e-114 416.4 321 64.2
Hma1.2p1_0020F.1_g014110 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 2.2e-114 416.4 316 65.8
Lalb_Chr18g0055371 Lupinus albus HOM05D005657 ORTHO05D007104 6.5e-114 414.8 319 63.3
Cc07_g20130 Coffea canephora HOM05D005657 ORTHO05D007104 3.2e-113 412.5 319 63.6
Glyma.13G219000 Glycine max HOM05D005657 ORTHO05D007104 3.2e-113 412.5 321 61.7
GSVIVG01021513001 Vitis vinifera HOM05D005657 ORTHO05D007104 1.2e-112 410.6 319 63.3
Ciclev10015992m.g Citrus clementina HOM05D005657 ORTHO05D007104 2.7e-112 409.5 323 63.5
MD05G1282500 Malus domestica HOM05D005657 ORTHO05D007104 2.7e-112 409.5 322 64.9
Nitab4.5_0000717g0030 Nicotiana tabacum HOM05D005657 ORTHO05D007104 4.6e-112 408.7 240 83.3
VMungo0540G0312 Vigna mungo HOM05D005657 ORTHO05D007104 7.9e-112 407.9 321 62.0
CSS0046586 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 1.0e-111 407.5 318 64.2
QL05p057428 Quercus lobata HOM05D005657 ORTHO05D007104 1.4e-111 407.1 322 63.0
Thhalv10008271m.g Eutrema salsugineum HOM05D005657 ORTHO05D007104 1.8e-111 406.8 318 63.2
Thecc.06G148800 Theobroma cacao HOM05D005657 ORTHO05D007104 2.3e-111 406.4 319 63.6
Haze_05617 Corylus avellana HOM05D005657 ORTHO05D007104 6.7e-111 404.8 355 58.3
MSTRG.16252 Avicennia marina HOM05D005657 ORTHO05D007104 2.0e-110 403.3 317 62.5
Medtr2g019220 Medicago truncatula HOM05D005657 ORTHO05D007104 2.5e-110 402.9 317 60.6
Lj6g0016438 Lotus japonicus HOM05D005657 ORTHO05D007104 3.3e-110 402.5 317 60.9
Oeu042460.1 Olea europaea HOM05D005657 ORTHO05D007104 7.4e-110 401.4 319 63.6
TAR626G1592 Trochodendron aralioides HOM05D005657 ORTHO05D007104 7.4e-110 401.4 319 61.1
ClCG01G024690 Citrullus lanatus HOM05D005657 ORTHO05D007104 9.7e-110 401.0 320 62.8
Eucgr.E01441 Eucalyptus grandis HOM05D005657 ORTHO05D007104 2.2e-109 399.8 324 62.0
CSS0036233 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 2.8e-109 399.4 318 62.3
DCAR_007885 Daucus carota HOM05D005657 ORTHO05D007104 4.8e-109 398.7 321 64.2
Nn4g26588 Nelumbo nucifera HOM05D005657 ORTHO05D007104 4.8e-109 398.7 327 61.2
Duzib192G0691 Durio zibethinus HOM05D005657 ORTHO05D007104 1.4e-108 397.1 337 59.9
PGR031G0971 Punica granatum HOM05D005657 ORTHO05D007104 1.8e-108 396.7 319 60.8
HanXRQChr16g0525711 Helianthus annuus HOM05D005657 ORTHO05D007104 3.1e-108 396.0 318 62.6
CARHR029280 Cardamine hirsuta HOM05D005657 ORTHO05D007104 4.1e-108 395.6 320 60.3
Ca_00535_v3 Cicer arietinum L. HOM05D005657 ORTHO05D007104 4.1e-108 395.6 317 59.9
FAN21G3134 Fragaria x ananassa HOM05D005657 ORTHO05D007104 4.1e-108 395.6 316 63.3
Lsat_1_v5_gn_4_29400 Lactuca sativa HOM05D005657 ORTHO05D007104 6.9e-108 394.8 322 62.4
arahy.Tifrunner.gnm1.ann1.1GZ3A6 Arachis hypogaea HOM05D005657 ORTHO05D007104 9.1e-108 394.4 316 59.8
FAN16G0196 Fragaria x ananassa HOM05D005657 ORTHO05D007104 2.0e-107 393.3 316 62.0
CsaV3_6G051800 Cucumis sativus L. HOM05D005657 ORTHO05D007104 2.6e-107 392.9 318 61.6
arahy.Tifrunner.gnm1.ann1.PL5EIV Arachis hypogaea HOM05D005657 ORTHO05D007104 4.5e-107 392.1 316 59.8
Aa31LG6G5550 Aethionema arabicum HOM05D005657 ORTHO05D007104 7.7e-107 391.3 316 61.4
FvH4_3g05380 Fragaria vesca HOM05D005657 ORTHO05D007104 7.7e-107 391.3 316 62.7
Potri.011G084000 Populus trichocarpa HOM05D005657 ORTHO05D007104 1.7e-106 390.2 319 64.6
BcaB03g12197 Brassica carinata HOM05D005657 ORTHO05D007104 8.5e-106 387.9 316 60.1
A08p24690 Brassica napus HOM05D005657 ORTHO05D007104 1.1e-105 387.5 316 60.4
Sc24g0001740 Simmondsia chinensis HOM05D005657 ORTHO05D007104 1.1e-105 387.5 318 60.4
AT1G30130 Arabidopsis thaliana HOM05D005657 ORTHO05D007104 1.4e-105 387.1 318 60.4
BcaC01g00157 Brassica carinata HOM05D005657 ORTHO05D007104 1.9e-105 386.7 316 60.4
BraA08t34424Z Brassica rapa HOM05D005657 ORTHO05D007104 1.9e-105 386.7 316 60.4
Psat1g188200 Pisum sativum HOM05D005657 ORTHO05D007104 2.5e-105 386.3 317 58.7
Sp1g25990 Schrenkiella parvula HOM05D005657 ORTHO05D007104 2.5e-105 386.3 318 60.1
TWI53G0207 Tripterygium wilfordii HOM05D005657 ORTHO05D007104 2.5e-105 386.3 318 61.3
RcHm_v2.0_Chr5g0014371 Rosa chinensis HOM05D005657 ORTHO05D007104 4.2e-105 385.6 316 61.7
Sabra11G0066600 Salix brachista HOM05D005657 ORTHO05D007104 4.2e-105 385.6 319 62.7
vmacro10957 Vaccinium macrocarpon HOM05D005657 ORTHO05D007104 4.2e-105 385.6 370 54.6
C03p76410 Brassica napus HOM05D005657 ORTHO05D007104 5.5e-105 385.2 316 59.5
Prupe.4G082300 Prunus persica HOM05D005657 ORTHO05D007104 1.2e-104 384.0 317 62.1
BolC3t19896H Brassica oleracea HOM05D005657 ORTHO05D007104 2.1e-104 383.3 316 60.4
EL10Ac8g19662 Beta vulgaris HOM05D005657 ORTHO05D007104 1.0e-103 380.9 319 60.8
CANSAT35G1510 Cannabis sativa HOM05D005657 ORTHO05D007104 1.8e-103 380.2 320 59.7
MELO3C007126.2 Cucumis melo HOM05D005657 ORTHO05D007104 1.8e-103 380.2 322 59.3
Manes.17G071500 Manihot esculenta HOM05D005657 ORTHO05D007104 5.1e-103 378.6 318 60.1
Sed0002032 Sechium edule HOM05D005657 ORTHO05D007104 5.7e-102 375.2 318 58.8
Aqoxy1G01688 Aquilegia oxysepala HOM05D005657 ORTHO05D007104 2.8e-101 372.9 328 58.5
Ah.09g232540 Amaranthus hybridus HOM05D005657 ORTHO05D007104 4.8e-101 372.1 321 60.1
Carub.0001s2836 Capsella rubella HOM05D005657 ORTHO05D007104 6.3e-101 371.7 318 58.2
ECA234G1983 Erigeron canadensis HOM05D005657 ORTHO05D007104 1.2e-99 367.5 318 59.1
THA.LOC104812673 Tarenaya hassleriana HOM05D005657 ORTHO05D007104 1.2e-99 367.5 325 57.5
PSO339G2615 Papaver somniferum HOM05D005657 ORTHO05D007104 5.9e-99 365.2 324 56.8
FAN25G2659 Fragaria x ananassa HOM05D005657 ORTHO05D007104 1.7e-98 363.6 273 67.0
TPR.G26236 Trifolium pratense HOM05D005657 ORTHO05D007104 8.5e-98 361.3 316 54.4
PSO384G4094 Papaver somniferum HOM05D005657 ORTHO05D007104 8.0e-96 354.8 324 56.2
TPR.G26242 Trifolium pratense HOM05D005657 ORTHO05D007104 4.0e-95 352.4 289 58.1
MBI18_g24473_MAGBIO Magnolia biondii HOM05D005657 ORTHO05D007104 9.7e-94 347.8 323 56.0
ATR1098G050 Amborella trichopoda HOM05D005657 ORTHO05D007104 4.8e-93 345.5 335 53.1
Dinv30768 Davidia involucrata HOM05D005657 ORTHO05D007104 7.7e-91 338.2 239 71.1
AUR62002729 Chenopodium quinoa HOM05D005657 ORTHO05D007104 1.3e-90 337.4 228 70.6
Rhsim02G0159200 Rhododendron simsii HOM05D005657 ORTHO05D007104 5.0e-90 335.5 324 54.9
SEGI_34988 Sequoiadendron giganteum HOM05D005657 ORTHO05D007104 1.9e-89 333.6 333 52.3
HPP92_012186 Vanilla planifolia HOM05D005657 ORTHO05D007104 2.1e-88 330.1 324 53.4
Phvul.006G165700 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 1.8e-87 327.0 321 53.6
Migut.D01761 Erythranthe guttata HOM05D005657 ORTHO05D007104 8.8e-87 324.7 239 68.2
FAN11G2536 Fragaria x ananassa HOM05D005657 ORTHO05D007104 3.4e-86 322.8 316 55.1
Zm00001eb300160 Zea mays HOM05D005657 ORTHO05D007104 4.4e-86 322.4 331 52.6
Hund15862 Selenicereus undatus HOM05D005657 ORTHO05D007104 1.4e-84 317.4 316 54.4
Lj2A319G39 Lonicera japonica HOM05D005657 ORTHO05D007104 4.2e-81 305.8 213 69.0
Actinidia07705 Actinidia chinensis HOM05D005657 ORTHO05D007104 8.8e-79 298.1 316 51.6
PGSC0003DMG400002455 Solanum tuberosum HOM05D005657 ORTHO05D007104 4.9e-77 292.4 144 91.7
DCAR_027907 Daucus carota HOM05D005657 ORTHO05D007104 3.1e-76 289.7 314 49.4
DCAR_027906 Daucus carota HOM05D005657 ORTHO05D007104 4.1e-76 289.3 314 48.7
Pp3c19_5890 Physcomitrium patens HOM05D005657 ORTHO05D007104 1.0e-74 284.6 329 49.5
SalBow2G3627 Salvia bowleyana HOM05D005657 ORTHO05D007104 4.7e-72 275.8 331 43.8
DCAR_027905 Daucus carota HOM05D005657 ORTHO05D007104 3.0e-71 273.1 249 54.6
AUR62030180 Chenopodium quinoa HOM05D005657 ORTHO05D007104 8.9e-71 271.6 178 71.3
Mapoly0156s0023 Marchantia polymorpha HOM05D005657 ORTHO05D007104 4.1e-68 262.7 284 50.7
AagrBONN_evm.TU.Sc2ySwM_117.1613 Anthoceros agrestis HOM05D001134 ORTHO05D001035 2.0e-67 260.4 248 55.6
SMO364G0117 Selaginella moellendorffii HOM05D005657 ORTHO05D007104 2.0e-67 260.4 320 48.8
Atru.chr10.1193 Acer truncatum HOM05D005657 ORTHO05D007104 3.5e-67 259.6 209 59.8
CDE01G0002 Ceratophyllum demersum HOM05D005657 ORTHO05D007104 3.3e-65 253.1 255 55.7
Glyma.15G093200 Glycine max HOM05D005657 ORTHO05D007104 1.7e-61 240.7 174 69.0
BcaB03g12196 Brassica carinata HOM05D005657 ORTHO05D007104 2.9e-61 240.0 156 69.9
Hma1.2p1_0020F.1_g014100 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 6.4e-61 238.8 178 69.7
Rhsim02G0159300 Rhododendron simsii HOM05D005657 ORTHO05D007104 3.9e-58 229.6 226 50.9
SGA_v2.0_scaffold333G48980 Striga asiatica HOM05D005657 ORTHO05D007104 3.2e-52 209.9 130 76.2
Os07g0153300 Oryza sativa ssp. japonica HOM05D005657 ORTHO05D007104 1.6e-51 207.6 169 60.4
SalBow2G2566 Salvia bowleyana HOM05D005657 ORTHO05D007104 4.4e-46 189.5 317 37.9
unitig_26.g9756 Utricularia gibba HOM05D005657 ORTHO05D007104 1.1e-44 184.9 156 59.0
Hma1.2p1_0020F.1_g014120 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 4.1e-44 183.0 143 60.1
AUR62002725 Chenopodium quinoa HOM05D005657 ORTHO05D007104 1.3e-42 177.9 224 45.1
MCO14G385 Micromonas commoda HOM05D005657 ORTHO05D007104 6.6e-42 175.6 241 43.2
Cre06.g269300 Chlamydomonas reinhardtii HOM05D005657 ORTHO05D007104 4.0e-39 166.4 218 41.7
CBR_g39195 Chara braunii HOM05D005657 ORTHO05D007104 4.4e-38 162.9 420 29.3
PRCOL_00005919 Prasinoderma coloniale HOM05D005657 ORTHO05D007104 3.5e-35 153.3 260 36.9
TPR.G26247 Trifolium pratense HOM05D005657 ORTHO05D007104 1.1e-33 148.3 117 61.5
SalBow2G0785 Salvia bowleyana HOM05D005657 ORTHO05D007104 6.0e-27 125.9 173 42.8
SGA_v2.0_scaffold37G14914 Striga asiatica HOM05D005657 ORTHO05D007104 9.9e-22 108.6 61 78.7
unitig_26.g9757 Utricularia gibba HOM05D005657 ORTHO05D007104 3.7e-16 90.1 66 62.1
Glyma.08G293333 Glycine max HOM05D005657 ORTHO05D007104 2.6e-14 84.0 51 70.6
TPR.G7274 Trifolium pratense HOM05D005657 ORTHO05D007104 5.8e-14 82.8 79 50.6
COL.COLO4_31053 Corchorus olitorius HOM05D005657 ORTHO05D007104 1.7e-13 81.3 53 71.7
Phvul.007G245866 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 4.6e-11 73.2 47 66.0
CSS0012720 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 2.8e-08 63.9 36 75.0
SGA_v2.0_scaffold119G32786 Striga asiatica HOM05D005657 ORTHO05D007104 8.2e-08 62.4 31 87.1
Duzib160G0546 Durio zibethinus HOM05D005657 ORTHO05D007104 1.4e-07 61.6 37 64.9
SGA_v2.0_scaffold118G32549 Striga asiatica HOM05D005657 ORTHO05D007104 1.2e-06 58.5 31 83.9
MCO01G569 Micromonas commoda HOM05D005657 ORTHO05D007104 2.0e-06 57.8 42 61.9


User provided reference genes

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