Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 7.0e-74 280.8 170 100.0
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 6.1e-70 267.7 170 95.9
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 2.0e-68 262.7 170 95.3
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 2.0e-68 262.7 170 95.3
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 9.8e-68 260.4 170 94.7
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.1e-66 256.9 170 93.5
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 2.9e-64 248.8 174 89.7
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 5.2e-61 238.0 171 84.8
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.8e-58 229.6 170 82.4
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 1.3e-51 206.8 169 73.4
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 1.3e-51 206.8 169 74.6
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 4.9e-51 204.9 164 77.4
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 2.4e-50 202.6 170 75.3
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 3.2e-50 202.2 170 68.8
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 7.0e-50 201.1 166 76.5
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 9.2e-50 200.7 164 76.8
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 7.8e-49 197.6 158 78.5
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 2.3e-48 196.1 164 75.6
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 5.0e-48 194.9 175 70.9
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 1.5e-47 193.4 169 73.4
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 2.5e-47 192.6 167 74.3
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 4.3e-47 191.8 164 75.0
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 5.6e-47 191.4 170 68.8
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 9.5e-47 190.7 170 73.5
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 1.2e-46 190.3 167 72.5
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 1.6e-46 189.9 166 72.9
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 6.2e-46 188.0 168 57.1
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 8.0e-46 187.6 172 69.8
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 1.8e-45 186.4 169 74.0
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 2.3e-45 186.0 171 71.9
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 2.3e-45 186.0 143 80.4
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 2.3e-45 186.0 175 70.3
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 2.2e-43 179.5 162 71.6
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 2.2e-43 179.5 162 71.6
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 2.4e-42 176.0 154 72.1
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 2.4e-42 176.0 154 72.1
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 2.4e-42 176.0 154 72.1
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 2.4e-42 176.0 170 57.6
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 4.1e-42 175.3 159 72.3
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 1.2e-41 173.7 159 71.7
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.2e-41 173.7 170 72.4
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 3.5e-41 172.2 163 66.3
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 4.6e-41 171.8 162 70.4
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 6.0e-41 171.4 176 69.9
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 1.0e-40 170.6 173 53.8
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.0e-40 170.6 173 53.8
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.0e-40 170.6 173 53.8
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 3.9e-40 168.7 172 67.4
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 5.0e-40 168.3 157 70.1
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.1e-39 167.2 173 52.6
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 1.9e-39 166.4 160 55.6
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 1.9e-39 166.4 165 69.1
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 4.3e-39 165.2 173 64.2
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 7.3e-39 164.5 154 55.8
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 7.3e-39 164.5 154 55.8
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 1.6e-38 163.3 154 55.2
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 2.8e-38 162.5 148 68.9
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 3.6e-38 162.2 167 53.9
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 3.6e-38 162.2 237 42.2
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 6.2e-38 161.4 163 66.9
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 6.2e-38 161.4 158 53.8
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 1.4e-37 160.2 169 60.9
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 3.1e-37 159.1 172 60.5
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 4.0e-37 158.7 173 50.3
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 4.0e-37 158.7 170 60.0
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 8.9e-37 157.5 168 51.2
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 1.5e-36 156.8 170 64.1
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 2.0e-36 156.4 165 66.7
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 3.4e-36 155.6 169 54.4
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 4.4e-36 155.2 170 62.4
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 5.8e-36 154.8 175 50.3
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 1.3e-35 153.7 182 51.6
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 1.7e-35 153.3 170 64.7
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 2.2e-35 152.9 171 60.8
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 3.7e-35 152.1 173 64.7
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 3.7e-35 152.1 173 64.7
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 3.7e-35 152.1 170 64.7
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 3.7e-35 152.1 170 64.7
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 3.7e-35 152.1 170 61.8
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 4.9e-35 151.8 159 67.3
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 4.9e-35 151.8 163 63.2
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 6.4e-35 151.4 161 60.9
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 6.4e-35 151.4 168 62.5
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 8.3e-35 151.0 164 64.6
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 1.4e-34 150.2 160 66.2
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 1.9e-34 149.8 162 64.2
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.9e-34 149.8 172 61.0
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 1.9e-34 149.8 163 60.1
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 2.4e-34 149.4 165 63.6
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 3.2e-34 149.1 172 59.3
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 4.1e-34 148.7 173 61.3
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 5.4e-34 148.3 166 61.4
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 7.1e-34 147.9 173 60.1
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 7.1e-34 147.9 173 47.4
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 9.2e-34 147.5 172 59.3
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 9.2e-34 147.5 170 45.9
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 9.2e-34 147.5 175 62.3
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 1.6e-33 146.7 150 68.7
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 1.6e-33 146.7 126 73.0
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 2.1e-33 146.4 175 61.1
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 2.1e-33 146.4 175 61.1
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 2.7e-33 146.0 166 65.7
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 4.6e-33 145.2 161 50.9
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 4.6e-33 145.2 173 46.8
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 4.6e-33 145.2 173 58.4
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 1.3e-32 143.7 165 63.6
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 1.7e-32 143.3 173 59.5
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 2.3e-32 142.9 170 61.2
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 3.0e-32 142.5 172 61.6
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 3.0e-32 142.5 173 58.4
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 3.0e-32 142.5 159 61.6
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 5.1e-32 141.7 172 59.9
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 5.1e-32 141.7 170 63.5
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 1.1e-31 140.6 169 56.8
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 1.9e-31 139.8 171 63.2
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 2.5e-31 139.4 158 61.4
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 2.5e-31 139.4 173 53.8
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 3.3e-31 139.0 168 63.1
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 2.1e-30 136.3 167 62.9
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 2.1e-30 136.3 164 62.2
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 2.1e-30 136.3 170 53.5
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 3.6e-30 135.6 164 62.2
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 3.6e-30 135.6 164 62.2
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 3.6e-30 135.6 171 61.4
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 4.7e-30 135.2 164 61.6
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 6.2e-30 134.8 159 62.9
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 8.1e-30 134.4 81 76.5
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 1.4e-29 133.7 157 46.5
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 2.3e-29 132.9 173 45.1
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 2.3e-29 132.9 166 60.2
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 3.1e-29 132.5 126 73.8
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 4.0e-29 132.1 159 46.5
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 1.2e-28 130.6 165 60.6
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 3.8e-27 125.6 174 59.2
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 4.1e-26 122.1 171 55.0
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 4.6e-25 118.6 124 46.8
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 6.0e-25 118.2 157 59.2
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 7.8e-25 117.9 157 59.2
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 2.3e-24 116.3 73 68.5
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 2.1e-22 109.8 66 77.3
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 2.8e-22 109.4 129 48.1
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 6.2e-22 108.2 126 61.1
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 1.4e-21 107.1 65 76.9
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 2.6e-20 102.8 132 44.7
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 4.6e-17 92.0 135 41.5
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 4.6e-17 92.0 97 75.3
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 5.6e-15 85.1 111 43.2
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 8.1e-14 81.3 121 39.7
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 1.5e-12 77.0 152 33.6
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 6.4e-11 71.6 100 69.0


User provided reference genes

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