Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 8.9e-44 179.9 90 100.0
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 1.7e-34 149.1 85 88.2
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 3.7e-34 147.9 85 87.1
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 1.4e-33 146.0 85 88.2
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 1.9e-33 145.6 85 85.9
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 2.4e-33 145.2 85 84.7
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 2.4e-33 145.2 85 84.7
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 1.0e-31 139.8 86 77.9
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 3.9e-31 137.9 85 80.0
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 3.9e-31 137.9 85 78.8
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 3.9e-31 137.9 85 80.0
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 5.1e-31 137.5 85 81.2
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 6.6e-31 137.1 85 81.2
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 8.6e-31 136.7 85 81.2
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 1.9e-30 135.6 85 80.0
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 2.5e-30 135.2 86 79.1
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 2.5e-30 135.2 85 80.0
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 4.3e-30 134.4 85 78.8
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 5.6e-30 134.0 85 78.8
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 7.3e-30 133.7 85 76.5
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 7.3e-30 133.7 86 75.6
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 7.3e-30 133.7 85 74.1
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 9.5e-30 133.3 85 78.8
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 1.2e-29 132.9 85 75.3
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.2e-29 132.9 85 78.8
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 1.2e-29 132.9 85 77.6
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 1.6e-29 132.5 85 75.3
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 1.6e-29 132.5 85 77.6
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 1.6e-29 132.5 85 75.3
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.6e-29 132.5 85 78.8
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 2.1e-29 132.1 85 78.8
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 2.1e-29 132.1 85 77.6
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 2.1e-29 132.1 85 77.6
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 2.8e-29 131.7 85 76.5
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.8e-29 131.7 86 76.7
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.8e-29 131.7 86 76.7
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 2.8e-29 131.7 85 76.5
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 2.8e-29 131.7 85 72.9
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 3.6e-29 131.3 85 76.5
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 3.6e-29 131.3 85 76.5
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 3.6e-29 131.3 85 77.6
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 3.6e-29 131.3 85 74.1
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 4.7e-29 131.0 85 74.1
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 4.7e-29 131.0 85 75.3
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 6.2e-29 130.6 85 75.3
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 6.2e-29 130.6 85 76.5
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 6.2e-29 130.6 85 74.1
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 8.1e-29 130.2 85 74.1
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 8.1e-29 130.2 85 76.5
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.1e-28 129.8 85 76.5
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 1.4e-28 129.4 87 74.7
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 1.4e-28 129.4 85 76.5
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.4e-28 129.4 85 76.5
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 1.4e-28 129.4 85 74.1
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 1.4e-28 129.4 85 77.6
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.4e-28 129.4 85 76.5
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.4e-28 129.4 85 76.5
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 1.8e-28 129.0 85 72.9
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 1.8e-28 129.0 85 75.3
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 1.8e-28 129.0 85 75.3
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 1.8e-28 129.0 86 74.4
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 1.8e-28 129.0 86 73.3
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 2.3e-28 128.6 85 76.5
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.3e-28 128.6 86 75.6
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 2.3e-28 128.6 85 74.1
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 3.1e-28 128.3 85 76.5
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 3.1e-28 128.3 84 76.2
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 3.1e-28 128.3 85 71.8
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 3.1e-28 128.3 86 70.9
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 4.0e-28 127.9 85 72.9
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 4.0e-28 127.9 85 75.3
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 4.0e-28 127.9 85 74.1
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 5.2e-28 127.5 85 76.5
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 5.2e-28 127.5 85 76.5
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 5.2e-28 127.5 84 72.6
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 6.8e-28 127.1 85 74.1
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 6.8e-28 127.1 85 75.3
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 6.8e-28 127.1 85 72.9
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 6.8e-28 127.1 85 74.1
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 6.8e-28 127.1 85 74.1
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 6.8e-28 127.1 85 75.3
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 6.8e-28 127.1 85 75.3
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 6.8e-28 127.1 85 74.1
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 8.9e-28 126.7 85 74.1
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 8.9e-28 126.7 85 72.9
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 1.2e-27 126.3 85 71.8
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 1.2e-27 126.3 85 75.3
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 1.2e-27 126.3 85 74.1
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 1.2e-27 126.3 85 70.6
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 1.5e-27 125.9 85 74.1
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 1.5e-27 125.9 85 72.9
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 2.0e-27 125.6 85 74.1
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 2.0e-27 125.6 85 75.3
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 2.0e-27 125.6 87 70.1
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 2.0e-27 125.6 85 74.1
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 2.0e-27 125.6 85 68.2
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 2.6e-27 125.2 85 74.1
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 2.6e-27 125.2 85 72.9
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 2.6e-27 125.2 85 72.9
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 2.6e-27 125.2 85 72.9
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 2.6e-27 125.2 85 68.2
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 2.6e-27 125.2 85 74.1
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.4e-27 124.8 85 72.9
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 3.4e-27 124.8 85 70.6
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 7.5e-27 123.6 85 71.8
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 7.5e-27 123.6 85 71.8
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 7.5e-27 123.6 87 72.4
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 7.5e-27 123.6 85 71.8
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 7.5e-27 123.6 85 72.9
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 9.9e-27 123.2 85 72.9
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 9.9e-27 123.2 85 72.9
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 9.9e-27 123.2 85 70.6
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 1.3e-26 122.9 85 71.8
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.7e-26 122.5 85 71.8
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 1.7e-26 122.5 85 74.1
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 2.2e-26 122.1 85 71.8
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 2.9e-26 121.7 85 72.9
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 4.9e-26 120.9 85 69.4
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 8.3e-26 120.2 77 81.8
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 1.4e-25 119.4 84 71.4
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 1.9e-25 119.0 85 69.4
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 1.9e-25 119.0 86 68.6
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 2.4e-25 118.6 85 70.6
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 4.1e-25 117.9 83 71.1
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 5.4e-25 117.5 82 73.2
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 5.4e-25 117.5 85 71.8
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 7.1e-25 117.1 85 72.9
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 2.1e-24 115.5 85 69.4
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 4.6e-24 114.4 85 68.2
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 7.8e-24 113.6 85 67.1
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 3.0e-23 111.7 96 63.5
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 3.0e-23 111.7 98 62.2
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 6.6e-23 110.5 72 72.2
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 8.6e-23 110.2 86 64.0
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.1e-22 109.8 86 65.1
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.9e-22 109.0 85 64.7
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.3e-22 108.2 90 65.6
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 4.3e-22 107.8 91 63.7
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 7.3e-22 107.1 86 65.1
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 9.5e-22 106.7 85 61.2
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.2e-21 106.3 85 63.5
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.2e-21 106.3 86 62.8
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 2.8e-21 105.1 85 58.8
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 1.8e-20 102.4 85 60.0
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 5.8e-19 97.4 72 66.7
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 4.9e-18 94.4 167 37.1
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 1.1e-17 93.2 63 71.4
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 4.6e-16 87.8 87 57.5
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 2.3e-15 85.5 86 53.5
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 8.7e-15 83.6 84 48.8
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 8.7e-15 83.6 66 59.1
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 5.3e-12 74.3 77 49.4
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 1.2e-11 73.2 49 71.4
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 1.5e-11 72.8 78 50.0
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 1.7e-10 69.3 53 62.3
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 2.9e-10 68.6 50 62.0
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 6.4e-10 67.4 67 52.2
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 1.9e-09 65.9 48 62.5
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 1.2e-08 63.2 49 59.2


User provided reference genes

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