Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1731.5 Capsicum annuum HOM05D000595 ORTHO05D004141 1.2e-114 416.4 199 100.0
Peaxi162Scf00053g00618 Petunia axillaris HOM05D000595 ORTHO05D004141 5.4e-102 374.4 191 90.6
Solyc08g075530.3 Solanum lycopersicum HOM05D000595 ORTHO05D004141 5.4e-102 374.4 191 91.1
Sopen08g024190 Solanum pennellii HOM05D000595 ORTHO05D004141 9.3e-102 373.6 191 91.1
Nitab4.5_0000985g0070 Nicotiana tabacum HOM05D000595 ORTHO05D004141 4.6e-101 371.3 191 91.1
Nitab4.5_0000030g0360 Nicotiana tabacum HOM05D000595 ORTHO05D004141 1.7e-100 369.4 191 89.5
Lj8A330G11 Lonicera japonica HOM05D000595 ORTHO05D004141 5.3e-89 331.3 191 78.5
Dinv37419 Davidia involucrata HOM05D000595 ORTHO05D004141 1.2e-88 330.1 191 77.5
EL10Ac5g11905 Beta vulgaris HOM05D000595 ORTHO05D004141 1.6e-85 319.7 191 75.9
CSS0032199 Camellia sinensis var. sinensis HOM05D000595 ORTHO05D004141 1.3e-84 316.6 191 74.9
Cc00_g19580 Coffea canephora HOM05D000595 ORTHO05D004141 1.3e-84 316.6 196 73.5
MSTRG.24716 Avicennia marina HOM05D000595 ORTHO05D004141 1.8e-84 316.2 191 73.8
SGA_v2.0_scaffold111G31354 Striga asiatica HOM05D000595 ORTHO05D004141 3.0e-84 315.5 191 74.9
AUR62007422 Chenopodium quinoa HOM05D000595 ORTHO05D004141 5.1e-84 314.7 191 75.9
Hund14328 Selenicereus undatus HOM05D000595 ORTHO05D004141 1.1e-83 313.5 194 76.3
Rhsim11G0034700 Rhododendron simsii HOM05D000595 ORTHO05D004141 7.4e-83 310.8 191 73.8
Migut.E01361 Erythranthe guttata HOM05D000595 ORTHO05D004141 9.6e-83 310.5 192 74.0
Actinidia32782 Actinidia chinensis HOM05D000595 ORTHO05D004141 1.3e-82 310.1 191 74.3
Oeu042200.2 Olea europaea HOM05D000595 ORTHO05D004141 3.7e-82 308.5 191 73.3
SalBow4G2071 Salvia bowleyana HOM05D000595 ORTHO05D004141 3.7e-82 308.5 176 77.3
AUR62027310 Chenopodium quinoa HOM05D000595 ORTHO05D004141 1.8e-81 306.2 201 72.1
TAR629G2634 Trochodendron aralioides HOM05D000595 ORTHO05D004141 5.3e-81 304.7 191 73.3
Prupe.5G018900 Prunus persica HOM05D000595 ORTHO05D004141 6.9e-81 304.3 191 71.7
DCAR_004519 Daucus carota HOM05D000595 ORTHO05D004141 1.2e-80 303.5 191 72.3
Sc07g0008260 Simmondsia chinensis HOM05D000595 ORTHO05D004141 1.5e-80 303.1 191 72.3
MD00G1148100 Malus domestica HOM05D000595 ORTHO05D004141 2.0e-80 302.8 191 73.3
vmacro00079 Vaccinium macrocarpon HOM05D000595 ORTHO05D004141 5.8e-80 301.2 216 66.7
GSVIVG01022815001 Vitis vinifera HOM05D000595 ORTHO05D004141 7.6e-80 300.8 191 72.3
Medtr5g026610 Medicago truncatula HOM05D000595 ORTHO05D004141 2.2e-79 299.3 193 70.5
Eucgr.E01209 Eucalyptus grandis HOM05D000595 ORTHO05D004141 3.8e-79 298.5 187 73.8
Psat2g142760 Pisum sativum HOM05D000595 ORTHO05D004141 4.9e-79 298.1 194 70.6
Aqoxy3G02180 Aquilegia oxysepala HOM05D000595 ORTHO05D004141 1.4e-78 296.6 179 76.5
Eucgr.E01212 Eucalyptus grandis HOM05D000595 ORTHO05D004141 1.9e-78 296.2 187 73.3
Ah.02g117460 Amaranthus hybridus HOM05D000595 ORTHO05D004141 2.5e-78 295.8 191 71.2
Ca_25085_v3 Cicer arietinum L. HOM05D000595 ORTHO05D004141 7.1e-78 294.3 195 70.3
QL02p060306 Quercus lobata HOM05D000595 ORTHO05D004141 1.2e-77 293.5 191 70.2
MBI04_g21145_MAGBIO Magnolia biondii HOM05D000595 ORTHO05D004141 1.6e-77 293.1 186 73.7
QL02p060347 Quercus lobata HOM05D000595 ORTHO05D004141 1.6e-77 293.1 191 69.6
Manes.15G187301 Manihot esculenta HOM05D000595 ORTHO05D004141 2.7e-77 292.4 191 72.3
Thecc.10G189800 Theobroma cacao HOM05D000595 ORTHO05D004141 2.7e-77 292.4 191 70.7
TPR.G17247 Trifolium pratense HOM05D000595 ORTHO05D004141 4.6e-77 291.6 193 70.5
Atru.chr6.1509 Acer truncatum HOM05D000595 ORTHO05D004141 6.0e-77 291.2 191 69.1
Migut.A00539 Erythranthe guttata HOM05D000595 ORTHO05D004141 6.0e-77 291.2 177 74.0
Nn1g02038 Nelumbo nucifera HOM05D000595 ORTHO05D004141 6.0e-77 291.2 191 71.2
FAN13G2264 Fragaria x ananassa HOM05D000595 ORTHO05D004141 7.9e-77 290.8 191 71.2
Gohir.A02G091200 Gossypium hirsutum HOM05D000595 ORTHO05D004141 7.9e-77 290.8 186 72.0
Gohir.D02G109400 Gossypium hirsutum HOM05D000595 ORTHO05D004141 1.3e-76 290.0 183 72.7
Gorai.005G124100 Gossypium raimondii HOM05D000595 ORTHO05D004141 1.3e-76 290.0 183 72.7
FvH4_5g24150 Fragaria vesca HOM05D000595 ORTHO05D004141 1.8e-76 289.7 191 71.2
HanXRQChr17g0537211 Helianthus annuus HOM05D000595 ORTHO05D004141 3.0e-76 288.9 180 70.6
Glyma.04G123900 Glycine max HOM05D000595 ORTHO05D004141 3.9e-76 288.5 194 69.1
Phvul.002G127000 Phaseolus vulgaris HOM05D000595 ORTHO05D004141 3.9e-76 288.5 193 68.4
Psat2g142920 Pisum sativum HOM05D000595 ORTHO05D004141 8.7e-76 287.3 195 68.2
TPR.G17274 Trifolium pratense HOM05D000595 ORTHO05D004141 8.7e-76 287.3 193 68.4
Thecc.03G325300 Theobroma cacao HOM05D000595 ORTHO05D004141 1.1e-75 287.0 191 69.6
Cc08_g05430 Coffea canephora HOM05D000595 ORTHO05D004141 1.9e-75 286.2 191 70.2
Lj2g0003822 Lotus japonicus HOM05D000595 ORTHO05D004141 1.9e-75 286.2 193 68.4
Lalb_Chr09g0325191 Lupinus albus HOM05D000595 ORTHO05D004141 1.9e-75 286.2 193 68.9
CiPaw.11G104000 Carya illinoinensis HOM05D000595 ORTHO05D004141 2.5e-75 285.8 181 72.9
Potri.001G129600 Populus trichocarpa HOM05D000595 ORTHO05D004141 4.3e-75 285.0 181 74.0
TWI60G0525 Tripterygium wilfordii HOM05D000595 ORTHO05D004141 5.7e-75 284.6 180 72.8
HPP92_020874 Vanilla planifolia HOM05D000595 ORTHO05D004141 5.7e-75 284.6 178 71.9
Cfa012657 Carpinus fangiana HOM05D000595 ORTHO05D004141 7.4e-75 284.3 191 69.6
Haze_07995 Corylus avellana HOM05D000595 ORTHO05D004141 1.3e-74 283.5 191 69.1
VMungo1215G0102 Vigna mungo HOM05D000595 ORTHO05D004141 1.3e-74 283.5 193 67.4
Ciclev10000152m.g Citrus clementina HOM05D000595 ORTHO05D004141 1.6e-74 283.1 183 72.7
DCAR_004520 Daucus carota HOM05D000595 ORTHO05D004141 1.6e-74 283.1 191 66.5
RcHm_v2.0_Chr7g0213851 Rosa chinensis HOM05D000595 ORTHO05D004141 2.1e-74 282.7 191 70.2
Duzib116G0855 Durio zibethinus HOM05D000595 ORTHO05D004141 2.8e-74 282.3 191 70.2
PSO384G3519 Papaver somniferum HOM05D000595 ORTHO05D004141 2.8e-74 282.3 179 72.6
PGR042G2013 Punica granatum HOM05D000595 ORTHO05D004141 2.8e-74 282.3 181 70.7
Duzib116G0431 Durio zibethinus HOM05D000595 ORTHO05D004141 4.8e-74 281.6 191 69.1
HPP92_028113 Vanilla planifolia HOM05D000595 ORTHO05D004141 6.3e-74 281.2 178 71.3
CSS0018432 Camellia sinensis var. sinensis HOM05D000595 ORTHO05D004141 8.2e-74 280.8 190 68.4
Sabra01G0099900 Salix brachista HOM05D000595 ORTHO05D004141 1.1e-73 280.4 181 72.9
ClCG10G000900 Citrullus lanatus HOM05D000595 ORTHO05D004141 1.4e-73 280.0 182 69.8
Cpa.g.sc71.57 Carica papaya HOM05D000595 ORTHO05D004141 1.8e-73 279.6 191 69.1
Lsat_1_v5_gn_3_23561 Lactuca sativa HOM05D000595 ORTHO05D004141 1.8e-73 279.6 197 68.5
THA.LOC104822230 Tarenaya hassleriana HOM05D000595 ORTHO05D004141 1.8e-73 279.6 187 68.4
MELO3C013786.2 Cucumis melo HOM05D000595 ORTHO05D004141 4.1e-73 278.5 187 70.1
PSO782G2105 Papaver somniferum HOM05D000595 ORTHO05D004141 1.5e-72 276.6 184 69.0
CsaV3_3G000980 Cucumis sativus L. HOM05D000595 ORTHO05D004141 2.6e-72 275.8 187 69.0
Lalb_Chr16g0380651 Lupinus albus HOM05D000595 ORTHO05D004141 7.6e-72 274.2 193 65.3
TPR.G39643 Trifolium pratense HOM05D000595 ORTHO05D004141 7.6e-72 274.2 208 62.5
AT3G23640 Arabidopsis thaliana HOM05D000595 ORTHO05D004141 1.0e-71 273.9 175 73.1
ECA246G1180 Erigeron canadensis HOM05D000595 ORTHO05D004141 1.7e-71 273.1 182 69.2
CDE01G0028 Ceratophyllum demersum HOM05D000595 ORTHO05D004141 2.9e-71 272.3 182 68.7
arahy.Tifrunner.gnm1.ann1.BJDV4A Arachis hypogaea HOM05D000595 ORTHO05D004141 3.8e-71 271.9 194 64.9
arahy.Tifrunner.gnm1.ann1.NQH3GN Arachis hypogaea HOM05D000595 ORTHO05D004141 3.8e-71 271.9 194 64.9
Sed0017541 Sechium edule HOM05D000595 ORTHO05D004141 3.8e-71 271.9 180 68.9
Aa31LG10G5270 Aethionema arabicum HOM05D000595 ORTHO05D004141 6.5e-71 271.2 186 67.7
Thhalv10019990m.g Eutrema salsugineum HOM05D000595 ORTHO05D004141 6.5e-71 271.2 187 67.9
AL3G38380 Arabidopsis lyrata HOM05D000595 ORTHO05D004141 8.5e-71 270.8 181 70.2
Oeu042228.5 Olea europaea HOM05D000595 ORTHO05D004141 1.9e-70 269.6 174 71.8
PSO384G3949 Papaver somniferum HOM05D000595 ORTHO05D004141 1.9e-70 269.6 175 70.3
Carub.0003s2391 Capsella rubella HOM05D000595 ORTHO05D004141 2.5e-70 269.2 175 70.9
GSVIVG01036945001 Vitis vinifera HOM05D000595 ORTHO05D004141 3.2e-70 268.9 174 71.3
VMungo1215G1352 Vigna mungo HOM05D000595 ORTHO05D004141 9.3e-70 267.3 174 73.0
Ciclev10002552m.g Citrus clementina HOM05D000595 ORTHO05D004141 1.6e-69 266.5 183 68.3
A01p31410 Brassica napus HOM05D000595 ORTHO05D004141 3.6e-69 265.4 187 66.3
BraA01t03266Z Brassica rapa HOM05D000595 ORTHO05D004141 3.6e-69 265.4 187 66.3
BraA01t03265Z Brassica rapa HOM05D000595 ORTHO05D004141 7.9e-69 264.2 181 66.9
Carub.0003s2390 Capsella rubella HOM05D000595 ORTHO05D004141 7.9e-69 264.2 177 68.9
FAN16G0455 Fragaria x ananassa HOM05D000595 ORTHO05D004141 7.9e-69 264.2 194 65.5
C01p40000 Brassica napus HOM05D000595 ORTHO05D004141 1.0e-68 263.8 187 65.8
Sp3g21340 Schrenkiella parvula HOM05D000595 ORTHO05D004141 2.3e-68 262.7 174 70.7
BcaB04g20429 Brassica carinata HOM05D000595 ORTHO05D004141 5.1e-68 261.5 192 65.1
C01p39990 Brassica napus HOM05D000595 ORTHO05D004141 5.1e-68 261.5 181 66.3
BolC1t03957H Brassica oleracea HOM05D000595 ORTHO05D004141 1.5e-67 260.0 187 65.2
ATR0829G165 Amborella trichopoda HOM05D000595 ORTHO05D004141 2.5e-67 259.2 191 64.4
Phvul.002G126900 Phaseolus vulgaris HOM05D000595 ORTHO05D004141 3.3e-67 258.8 174 69.0
A01p31400 Brassica napus HOM05D000595 ORTHO05D004141 4.3e-67 258.5 195 63.6
Manes.17G004600 Manihot esculenta HOM05D000595 ORTHO05D004141 4.3e-67 258.5 192 64.6
ECA246G0927 Erigeron canadensis HOM05D000595 ORTHO05D004141 5.7e-67 258.1 186 65.1
Migut.E01363 Erythranthe guttata HOM05D000595 ORTHO05D004141 7.4e-67 257.7 187 66.8
Oeu042203.1 Olea europaea HOM05D000595 ORTHO05D004141 3.7e-66 255.4 191 64.9
SEGI_21462 Sequoiadendron giganteum HOM05D000595 ORTHO05D004141 3.7e-66 255.4 189 61.9
BcaB04g20431 Brassica carinata HOM05D000595 ORTHO05D004141 5.9e-64 248.1 188 61.7
CARHR099600 Cardamine hirsuta HOM05D000595 ORTHO05D004141 1.7e-63 246.5 182 65.4
Zm00001eb305980 Zea mays HOM05D000595 ORTHO05D004141 9.4e-62 240.7 188 61.7
Oeu042194.1 Olea europaea HOM05D000595 ORTHO05D004141 3.9e-60 235.3 193 58.0
Oeu042195.1 Olea europaea HOM05D000595 ORTHO05D004141 8.8e-60 234.2 191 58.6
Os07g0420700 Oryza sativa ssp. japonica HOM05D000595 ORTHO05D004141 8.8e-60 234.2 186 61.3
Oeu042206.1 Olea europaea HOM05D000595 ORTHO05D004141 1.1e-57 227.3 191 59.2
Os07g0421300 Oryza sativa ssp. japonica HOM05D000595 ORTHO05D004141 2.6e-56 222.6 174 62.6
Mapoly0135s0001 Marchantia polymorpha HOM05D000595 ORTHO05D004141 1.4e-54 216.9 178 57.3
SGA_v2.0_scaffold89G27418 Striga asiatica HOM05D000595 ORTHO05D004141 9.4e-54 214.2 177 57.1
Pp3c4_24030 Physcomitrium patens HOM05D000595 ORTHO05D004141 1.2e-53 213.8 176 56.8
Ciclev10011016m.g Citrus clementina HOM05D000595 ORTHO05D004141 1.6e-53 213.4 165 64.8
Pp3c3_9200 Physcomitrium patens HOM05D000595 ORTHO05D004141 4.7e-53 211.8 170 58.2
Pp3c5_4460 Physcomitrium patens HOM05D000595 ORTHO05D004141 4.7e-53 211.8 177 57.1
Pp3c13_11140 Physcomitrium patens HOM05D000595 ORTHO05D004141 3.0e-52 209.1 169 57.4
Pp3c16_2470 Physcomitrium patens HOM05D000595 ORTHO05D004141 2.8e-50 202.6 191 51.8
Zm00001eb096920 Zea mays HOM05D000595 ORTHO05D004141 6.3e-50 201.4 130 70.8
SMO116G0166 Selaginella moellendorffii HOM05D000595 ORTHO05D004141 1.6e-48 196.8 170 55.3
AagrBONN_evm.TU.Sc2ySwM_344.2687 Anthoceros agrestis HOM05D000595 ORTHO05D004141 1.0e-47 194.1 184 52.7
AagrBONN_evm.TU.Sc2ySwM_228.2586 Anthoceros agrestis HOM05D000595 ORTHO05D004141 1.7e-47 193.4 199 50.3
Lsat_1_v5_gn_6_67241 Lactuca sativa HOM05D000595 ORTHO05D004141 2.8e-42 176.0 137 62.8
Ciclev10013908m.g Citrus clementina HOM05D000595 ORTHO05D004141 1.0e-36 157.5 88 79.5
Cpa.g.c48289 Carica papaya HOM05D000595 ORTHO05D004141 5.5e-30 135.2 69 85.5
Lj8A331G39 Lonicera japonica HOM05D000595 ORTHO05D004141 5.5e-30 135.2 91 69.2
COL.COLO4_06174 Corchorus olitorius HOM05D000595 ORTHO05D004141 6.3e-26 121.7 191 38.7
Pp3c19_14150 Physcomitrium patens HOM05D000595 ORTHO05D004141 6.3e-26 121.7 115 51.3
PGSC0003DMG400007975 Solanum tuberosum HOM05D000595 ORTHO05D004141 1.6e-24 117.1 62 87.1
RcHm_v2.0_Chr7g0213741 Rosa chinensis HOM05D000595 ORTHO05D004141 4.7e-21 105.5 84 63.1
FAN16G3365 Fragaria x ananassa HOM05D001806 ORTHO05D013993 6.1e-21 105.1 82 59.8
FAN09G4858 Fragaria x ananassa HOM05D001806 ORTHO05D013993 3.9e-15 85.9 67 59.7


User provided reference genes

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