Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G173.11 Capsicum annuum HOM05D001402 ORTHO05D001302 4.3e-59 231.1 116 100.0
Nitab4.5_0000403g0130 Nicotiana tabacum HOM05D001402 ORTHO05D001302 2.5e-38 162.2 101 80.2
Nitab4.5_0005269g0010 Nicotiana tabacum HOM05D001402 ORTHO05D001302 7.2e-38 160.6 101 79.2
PGSC0003DMG401008726 Solanum tuberosum HOM05D001402 ORTHO05D001302 2.1e-37 159.1 101 81.2
PGSC0003DMG402008726 Solanum tuberosum HOM05D001402 ORTHO05D001302 2.1e-37 159.1 101 81.2
Sopen09g021000 Solanum pennellii HOM05D001402 ORTHO05D001302 1.4e-36 156.4 101 79.2
Peaxi162Scf00487g00313 Petunia axillaris HOM05D001402 ORTHO05D001302 3.0e-36 155.2 101 77.2
Nitab4.5_0002167g0030 Nicotiana tabacum HOM05D001402 ORTHO05D001302 1.0e-23 113.6 101 58.4
Nitab4.5_0002311g0020 Nicotiana tabacum HOM05D001402 ORTHO05D001302 2.9e-23 112.1 101 58.4
Peaxi162Scf00761g00018 Petunia axillaris HOM05D001402 ORTHO05D001302 6.5e-23 110.9 101 58.4
Dinv28836 Davidia involucrata HOM05D001402 ORTHO05D001302 2.5e-22 109.0 103 57.3
Cc01_g16470 Coffea canephora HOM05D001402 ORTHO05D001302 1.2e-21 106.7 101 55.4
Actinidia23769 Actinidia chinensis HOM05D001402 ORTHO05D001302 1.6e-21 106.3 101 58.4
MSTRG.17983 Avicennia marina HOM05D001402 ORTHO05D001302 8.0e-21 104.0 101 56.4
CSS0023465 Camellia sinensis var. sinensis HOM05D001402 ORTHO05D001302 1.4e-20 103.2 101 54.5
CSS0026067 Camellia sinensis var. sinensis HOM05D001402 ORTHO05D001302 1.4e-20 103.2 101 54.5
Actinidia09457 Actinidia chinensis HOM05D001402 ORTHO05D001302 4.0e-20 101.7 101 55.4
Hma1.2p1_1234F.1_g269010 Hydrangea macrophylla HOM05D001402 ORTHO05D001302 8.8e-20 100.5 101 55.4
Lj2A1121G81 Lonicera japonica HOM05D001402 ORTHO05D001302 1.5e-19 99.8 101 56.4
Rhsim01G0250500 Rhododendron simsii HOM05D001402 ORTHO05D001302 2.0e-19 99.4 101 53.5
Oeu033332.1 Olea europaea HOM05D001402 ORTHO05D001302 5.7e-19 97.8 101 53.5
vmacro14717 Vaccinium macrocarpon HOM05D001402 ORTHO05D001302 4.8e-18 94.7 101 51.5
DCAR_004747 Daucus carota HOM05D001402 ORTHO05D001302 1.8e-17 92.8 101 51.5
Cfa010394 Carpinus fangiana HOM05D001402 ORTHO05D001302 1.6e-16 89.7 101 53.5
CAN.G181.30 Capsicum annuum HOM05D001402 ORTHO05D001302 5.9e-16 87.8 101 48.5
QL09p049505 Quercus lobata HOM05D001402 ORTHO05D001302 5.9e-16 87.8 112 48.2
CiPaw.13G051000 Carya illinoinensis HOM05D001402 ORTHO05D001302 1.0e-15 87.0 103 53.4
CiPaw.14G040400 Carya illinoinensis HOM05D001402 ORTHO05D001302 1.0e-15 87.0 101 52.5
CAN.G181.29 Capsicum annuum HOM05D001402 ORTHO05D001302 1.7e-15 86.3 101 48.5
SalBow6G3499 Salvia bowleyana HOM05D001402 ORTHO05D001302 1.7e-15 86.3 101 45.5
Ciclev10031774m.g Citrus clementina HOM05D001402 ORTHO05D001302 6.5e-15 84.3 102 49.0
MSTRG.20981 Avicennia marina HOM05D001402 ORTHO05D001302 1.1e-14 83.6 101 47.5
Thecc.01G215800 Theobroma cacao HOM05D001402 ORTHO05D001302 1.5e-14 83.2 101 48.5
Gohir.D11G147000 Gossypium hirsutum HOM05D001402 ORTHO05D001302 1.9e-14 82.8 111 45.9
Gorai.007G157400 Gossypium raimondii HOM05D001402 ORTHO05D001302 1.9e-14 82.8 111 45.9
Nn3g20088 Nelumbo nucifera HOM05D001402 ORTHO05D001302 2.5e-14 82.4 102 48.0
Nn1g08170 Nelumbo nucifera HOM05D001402 ORTHO05D001302 7.2e-14 80.9 102 49.0
Duzib133G1202 Durio zibethinus HOM05D001402 ORTHO05D001302 2.1e-13 79.3 101 46.5
FAN27G3269 Fragaria x ananassa HOM05D001402 ORTHO05D001302 2.1e-13 79.3 113 46.0
RcHm_v2.0_Chr6g0283601 Rosa chinensis HOM05D001402 ORTHO05D001302 3.6e-13 78.6 113 46.0
Potri.002G247700 Populus trichocarpa HOM05D001402 ORTHO05D001302 6.1e-13 77.8 102 48.0
Manes.13G051700 Manihot esculenta HOM05D001402 ORTHO05D001302 8.0e-13 77.4 101 47.5
Migut.D02487 Erythranthe guttata HOM05D001402 ORTHO05D001302 1.0e-12 77.0 103 49.5
Cpa.g.sc8.116 Carica papaya HOM05D001402 ORTHO05D001302 3.0e-12 75.5 110 41.8
Ca_23212_v3 Cicer arietinum L. HOM05D001402 ORTHO05D001302 3.0e-12 75.5 101 43.6
COL.COLO4_16119 Corchorus olitorius HOM05D001402 ORTHO05D001302 3.0e-12 75.5 101 46.5
FvH4_2g18230 Fragaria vesca HOM05D001402 ORTHO05D001302 3.0e-12 75.5 113 44.2
FAN15G1183 Fragaria x ananassa HOM05D001402 ORTHO05D001302 3.0e-12 75.5 113 44.2
FAN24G2984 Fragaria x ananassa HOM05D001402 ORTHO05D001302 3.0e-12 75.5 113 44.2
Manes.12G050300 Manihot esculenta HOM05D001402 ORTHO05D001302 3.0e-12 75.5 101 45.5
FAN15G1519 Fragaria x ananassa HOM05D001402 ORTHO05D001302 4.0e-12 75.1 113 44.2
arahy.Tifrunner.gnm1.ann1.ZHJA83 Arachis hypogaea HOM05D000015 ORTHO05D000984 5.2e-12 74.7 101 47.5
Glyma.03G085900 Glycine max HOM05D001402 ORTHO05D001302 8.8e-12 73.9 101 43.6
TPR.G16681 Trifolium pratense HOM05D001402 ORTHO05D001302 1.2e-11 73.6 101 43.6
Aqoxy2G03920 Aquilegia oxysepala HOM05D001402 ORTHO05D001302 2.6e-11 72.4 103 43.7
Prupe.8G195000 Prunus persica HOM05D001402 ORTHO05D001302 3.4e-11 72.0 101 43.6
PGSC0003DMG400020650 Solanum tuberosum HOM05D001402 ORTHO05D001302 3.4e-11 72.0 101 46.5
Eucgr.H00754 Eucalyptus grandis HOM05D001402 ORTHO05D001302 4.4e-11 71.6 111 44.1
Glyma.16G088400 Glycine max HOM05D001402 ORTHO05D001302 4.4e-11 71.6 101 42.6
MD10G1156700 Malus domestica HOM05D001402 ORTHO05D001302 4.4e-11 71.6 113 40.7
Phvul.010G023700 Phaseolus vulgaris HOM05D001402 ORTHO05D001302 7.5e-11 70.9 101 41.6
VMungo0331G0917 Vigna mungo HOM05D001402 ORTHO05D001302 1.3e-10 70.1 101 41.6
MD05G1166700 Malus domestica HOM05D001402 ORTHO05D001302 2.2e-10 69.3 113 40.7
PSO063G5544 Papaver somniferum HOM05D001402 ORTHO05D001302 2.2e-10 69.3 111 42.3
Sabra02G0188500 Salix brachista HOM05D001402 ORTHO05D001302 2.8e-10 68.9 103 45.6
PSO017G5238 Papaver somniferum HOM05D001402 ORTHO05D001302 3.7e-10 68.6 114 43.9
CANSAT01G0063 Cannabis sativa HOM05D001402 ORTHO05D001302 4.8e-10 68.2 103 49.5
CANSAT01G1691 Cannabis sativa HOM05D001402 ORTHO05D001302 4.8e-10 68.2 103 49.5
Medtr8g012420 Medicago truncatula HOM05D001402 ORTHO05D001302 4.8e-10 68.2 101 40.6
TWI18G1005 Tripterygium wilfordii HOM05D001402 ORTHO05D001302 6.3e-10 67.8 108 40.7
Ah.08g214820 Amaranthus hybridus HOM05D001402 ORTHO05D001302 8.3e-10 67.4 104 43.3
Aqoxy2G03922 Aquilegia oxysepala HOM05D001402 ORTHO05D001302 1.1e-09 67.0 105 43.8
AUR62016521 Chenopodium quinoa HOM05D001402 ORTHO05D001302 1.1e-09 67.0 113 37.2
Psat4g204600 Pisum sativum HOM05D001402 ORTHO05D001302 1.1e-09 67.0 104 44.2
Sed0017663 Sechium edule HOM05D001402 ORTHO05D001302 1.1e-09 67.0 113 42.5
Lalb_Chr19g0125931 Lupinus albus HOM05D001402 ORTHO05D001302 1.4e-09 66.6 105 39.0
Sopen06g002460 Solanum pennellii HOM05D001402 ORTHO05D014266 1.4e-09 66.6 101 42.6
CsaV3_7G026300 Cucumis sativus L. HOM05D001402 ORTHO05D001302 1.8e-09 66.2 108 44.4
AL3G18610 Arabidopsis lyrata HOM05D001402 ORTHO05D001302 3.1e-09 65.5 101 40.6
AUR62001155 Chenopodium quinoa HOM05D001402 ORTHO05D001302 3.1e-09 65.5 113 36.3
MELO3C021075.2 Cucumis melo HOM05D001402 ORTHO05D001302 3.1e-09 65.5 108 44.4
Lsat_1_v5_gn_5_177800 Lactuca sativa HOM05D001402 ORTHO05D001302 3.1e-09 65.5 104 40.4
Duzib138G1118 Durio zibethinus HOM05D001402 ORTHO05D001302 4.1e-09 65.1 101 45.5
AT3G07310 Arabidopsis thaliana HOM05D001402 ORTHO05D001302 5.4e-09 64.7 101 39.6
MBI07_g24021_MAGBIO Magnolia biondii HOM05D001402 ORTHO05D001302 5.4e-09 64.7 107 44.9
Solyc06g007560.3 Solanum lycopersicum HOM05D001402 ORTHO05D001302 7.0e-09 64.3 101 41.6
Aa31LG5G17880 Aethionema arabicum HOM05D001402 ORTHO05D001302 9.1e-09 63.9 101 37.6
ClCG09G008680 Citrullus lanatus HOM05D001402 ORTHO05D001302 1.2e-08 63.5 108 42.6
Lj3g0006669 Lotus japonicus HOM05D001402 ORTHO05D001302 1.2e-08 63.5 102 41.2
Sp3g06260 Schrenkiella parvula HOM05D001402 ORTHO05D001302 1.2e-08 63.5 101 39.6
Carub.0003s0685 Capsella rubella HOM05D001402 ORTHO05D001302 1.6e-08 63.2 101 38.6
EL10Ac7g17944 Beta vulgaris HOM05D001402 ORTHO05D001302 2.7e-08 62.4 101 39.6
THA.LOC104818981 Tarenaya hassleriana HOM05D001402 ORTHO05D001302 3.5e-08 62.0 101 38.6
C05p59990 Brassica napus HOM05D001402 ORTHO05D001302 4.5e-08 61.6 101 41.6
A05p40890 Brassica napus HOM05D001402 ORTHO05D001302 5.9e-08 61.2 101 38.6
BraA05t22818Z Brassica rapa HOM05D001402 ORTHO05D001302 5.9e-08 61.2 101 38.6
Solyc06g007550.1 Solanum lycopersicum HOM05D001402 ORTHO05D001302 5.9e-08 61.2 101 39.6
Zm00001eb169990 Zea mays HOM05D001402 ORTHO05D001302 5.9e-08 61.2 101 39.6
CARHR081960 Cardamine hirsuta HOM05D001402 ORTHO05D001302 7.7e-08 60.8 101 38.6
BolC5t34654H Brassica oleracea HOM05D001402 ORTHO05D001302 1.0e-07 60.5 101 41.6
VMungo1383G0312 Vigna mungo HOM05D001402 ORTHO05D001302 1.3e-07 60.1 102 40.2
Gohir.A11G140500 Gossypium hirsutum HOM05D001402 ORTHO05D001302 1.7e-07 59.7 70 45.7
Lalb_Chr07g0194341 Lupinus albus HOM05D001402 ORTHO05D001302 3.8e-07 58.5 101 38.6
THA.LOC104822482 Tarenaya hassleriana HOM05D001402 ORTHO05D001302 3.8e-07 58.5 104 36.5
HPP92_023183 Vanilla planifolia HOM05D001402 ORTHO05D001302 5.0e-07 58.2 112 37.5
ECA248G0789 Erigeron canadensis HOM05D001402 ORTHO05D001302 6.6e-07 57.8 101 39.6
Glyma.08G346900 Glycine max HOM05D001402 ORTHO05D001302 1.1e-06 57.0 101 36.6
Thhalv10020977m.g Eutrema salsugineum HOM05D001402 ORTHO05D001302 1.5e-06 56.6 101 35.6
Sc17g0001940 Simmondsia chinensis HOM05D001402 ORTHO05D001302 1.9e-06 56.2 100 39.0
Glyma.18G158300 Glycine max HOM05D001402 ORTHO05D001302 5.5e-06 54.7 101 35.6
BolC1t05555H Brassica oleracea HOM05D001402 ORTHO05D001302 9.5e-06 53.9 101 38.6
Os11g0456100 Oryza sativa ssp. japonica HOM05D001402 ORTHO05D001302 9.5e-06 53.9 106 37.7
PGR083G0882 Punica granatum HOM05D001402 ORTHO05D001302 9.5e-06 53.9 102 39.2


User provided reference genes

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