Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1725.10 Capsicum annuum HOM05D006820 ORTHO05D008526 5.0e-131 471.1 233 100.0
PGSC0003DMG400014660 Solanum tuberosum HOM05D006820 ORTHO05D008526 8.0e-121 437.2 230 92.6
Nitab4.5_0011212g0060 Nicotiana tabacum HOM05D006820 ORTHO05D008526 2.6e-119 432.2 227 92.1
Solyc01g112160.4 Solanum lycopersicum HOM05D006820 ORTHO05D008526 1.8e-117 426.0 227 91.2
Sopen01g054210 Solanum pennellii HOM05D006820 ORTHO05D008526 2.4e-117 425.6 227 91.6
Peaxi162Scf00362g00246 Petunia axillaris HOM05D006820 ORTHO05D008526 6.5e-115 417.5 230 88.7
CSS0042496 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 1.2e-95 353.6 223 76.2
DCAR_015665 Daucus carota HOM05D006820 ORTHO05D008526 2.6e-95 352.4 223 74.0
Lj9A405G64 Lonicera japonica HOM05D006820 ORTHO05D008526 9.8e-95 350.5 227 74.0
Manes.04G064800 Manihot esculenta HOM05D006820 ORTHO05D008526 9.8e-95 350.5 223 73.5
GSVIVG01023895001 Vitis vinifera HOM05D006820 ORTHO05D008526 1.4e-93 346.7 223 74.0
Actinidia32013 Actinidia chinensis HOM05D006820 ORTHO05D008526 1.9e-93 346.3 223 74.9
TAR625G0986 Trochodendron aralioides HOM05D006820 ORTHO05D008526 1.9e-93 346.3 223 73.5
Migut.B00016 Erythranthe guttata HOM05D006820 ORTHO05D008526 4.1e-93 345.1 224 73.2
AUR62012929 Chenopodium quinoa HOM05D006820 ORTHO05D008526 3.0e-91 339.0 222 71.6
Lsat_1_v5_gn_8_120400 Lactuca sativa HOM05D006820 ORTHO05D008526 6.6e-91 337.8 224 71.9
Nn6g31730 Nelumbo nucifera HOM05D006820 ORTHO05D008526 8.6e-91 337.4 223 68.6
QL11p053925 Quercus lobata HOM05D006820 ORTHO05D008526 1.1e-90 337.0 238 68.9
Potri.009G165400 Populus trichocarpa HOM05D006820 ORTHO05D008526 3.3e-90 335.5 220 73.2
Ciclev10029216m.g Citrus clementina HOM05D006820 ORTHO05D008526 5.6e-90 334.7 223 72.2
vmacro17294 Vaccinium macrocarpon HOM05D006820 ORTHO05D008526 5.6e-90 334.7 224 74.1
FvH4_2g16540 Fragaria vesca HOM05D006820 ORTHO05D008526 9.5e-90 334.0 223 70.9
Sc18g0005950 Simmondsia chinensis HOM05D006820 ORTHO05D008526 1.2e-89 333.6 223 69.5
Atru.chr5.3527 Acer truncatum HOM05D006820 ORTHO05D008526 2.1e-89 332.8 223 69.1
HanXRQChr14g0459061 Helianthus annuus HOM05D006820 ORTHO05D008526 2.1e-89 332.8 229 70.3
Thecc.02G045600 Theobroma cacao HOM05D006820 ORTHO05D008526 2.1e-89 332.8 223 69.5
Prupe.8G177600 Prunus persica HOM05D006820 ORTHO05D008526 3.6e-89 332.0 223 71.7
SGA_v2.0_scaffold58G20319 Striga asiatica HOM05D006820 ORTHO05D008526 3.6e-89 332.0 231 69.3
CiPaw.06G118200 Carya illinoinensis HOM05D006820 ORTHO05D008526 4.7e-89 331.6 222 70.7
FAN15G1990 Fragaria x ananassa HOM05D006820 ORTHO05D008526 6.2e-89 331.3 223 70.9
CANSAT25G2916 Cannabis sativa HOM05D006820 ORTHO05D008526 8.1e-89 330.9 223 70.4
FAN24G1561 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.1e-88 330.5 221 70.6
AUR62011713 Chenopodium quinoa HOM05D006820 ORTHO05D008526 3.1e-88 328.9 228 68.4
MD10G1138800 Malus domestica HOM05D006820 ORTHO05D008526 4.0e-88 328.6 224 71.0
FAN27G3410 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.2e-87 327.0 223 70.4
EL10Ac9g21258 Beta vulgaris HOM05D006820 ORTHO05D008526 1.5e-87 326.6 221 68.8
Duzib132G0878 Durio zibethinus HOM05D006820 ORTHO05D008526 1.5e-87 326.6 223 68.2
Gorai.008G040700 Gossypium raimondii HOM05D006820 ORTHO05D008526 2.0e-87 326.2 223 70.4
Haze_02054 Corylus avellana HOM05D006820 ORTHO05D008526 3.4e-87 325.5 244 63.5
Ah.01g007660 Amaranthus hybridus HOM05D006820 ORTHO05D008526 1.3e-86 323.6 222 71.2
ECA233G1752 Erigeron canadensis HOM05D006820 ORTHO05D008526 1.3e-86 323.6 209 73.2
PGR142G1762 Punica granatum HOM05D006820 ORTHO05D008526 2.9e-86 322.4 224 68.3
THA.LOC104804082 Tarenaya hassleriana HOM05D006820 ORTHO05D008526 2.9e-86 322.4 223 68.2
Hund06169 Selenicereus undatus HOM05D006820 ORTHO05D008526 4.9e-86 321.6 234 65.4
TWI79G0714 Tripterygium wilfordii HOM05D006820 ORTHO05D008526 6.4e-86 321.2 223 67.3
RcHm_v2.0_Chr6g0280561 Rosa chinensis HOM05D006820 ORTHO05D008526 1.1e-85 320.5 223 67.7
PSO541G0178 Papaver somniferum HOM05D006820 ORTHO05D008526 5.4e-85 318.2 224 68.8
Aqoxy6G01707 Aquilegia oxysepala HOM05D006820 ORTHO05D008526 9.2e-85 317.4 222 68.9
PSO675G9330 Papaver somniferum HOM05D006820 ORTHO05D008526 1.2e-84 317.0 224 68.3
Aa31LG6G16790 Aethionema arabicum HOM05D006820 ORTHO05D008526 3.5e-84 315.5 223 67.3
BcaC01g00229 Brassica carinata HOM05D006820 ORTHO05D008526 6.0e-84 314.7 223 65.9
Eucgr.I01511 Eucalyptus grandis HOM05D006820 ORTHO05D008526 1.0e-83 313.9 232 65.5
BraA08t34377Z Brassica rapa HOM05D000807 ORTHO05D000662 1.3e-83 313.5 223 65.9
BcaC01g00221 Brassica carinata HOM05D006820 ORTHO05D008526 1.7e-83 313.2 223 66.4
BolC3t19961H Brassica oleracea HOM05D000807 ORTHO05D000662 1.7e-83 313.2 223 66.8
Carub.0007s0026 Capsella rubella HOM05D006820 ORTHO05D008526 2.3e-83 312.8 221 66.1
Sp7g37400 Schrenkiella parvula HOM05D006820 ORTHO05D008526 2.3e-83 312.8 223 65.9
TPR.G18648 Trifolium pratense HOM05D006820 ORTHO05D008526 3.9e-83 312.0 222 65.3
RcHm_v2.0_Chr1g0329291 Rosa chinensis HOM05D006820 ORTHO05D008526 4.3e-82 308.5 224 67.4
AT4G38370 Arabidopsis thaliana HOM05D006820 ORTHO05D008526 5.6e-82 308.1 220 65.0
BraA08t34346Z Brassica rapa HOM05D006820 ORTHO05D008526 5.6e-82 308.1 223 64.6
AL7G10240 Arabidopsis lyrata HOM05D006820 ORTHO05D008526 1.2e-81 307.0 220 65.5
CDE07G0154 Ceratophyllum demersum HOM05D006820 ORTHO05D008526 1.2e-81 307.0 226 63.3
Glyma.14G001800 Glycine max HOM05D006820 ORTHO05D008526 1.6e-81 306.6 222 64.9
Medtr5g099030 Medicago truncatula HOM05D006820 ORTHO05D008526 2.8e-81 305.8 222 64.4
Thhalv10004876m.g Eutrema salsugineum HOM05D006820 ORTHO05D008526 2.3e-80 302.8 223 65.0
Phvul.008G291600 Phaseolus vulgaris HOM05D006820 ORTHO05D008526 4.0e-80 302.0 221 61.5
CARHR294110 Cardamine hirsuta HOM05D006820 ORTHO05D008526 5.2e-80 301.6 223 62.8
CsaV3_5G012520 Cucumis sativus L. HOM05D006820 ORTHO05D008526 6.8e-80 301.2 230 62.2
LjContig00081g0000354 Lotus japonicus HOM05D006820 ORTHO05D008526 6.8e-80 301.2 221 64.7
arahy.Tifrunner.gnm1.ann1.6J1J15 Arachis hypogaea HOM05D006820 ORTHO05D008526 2.6e-79 299.3 226 63.3
FvH4_7g04340 Fragaria vesca HOM05D006820 ORTHO05D008526 1.3e-78 297.0 224 64.7
Lalb_Chr10g0095311 Lupinus albus HOM05D006820 ORTHO05D008526 1.7e-78 296.6 221 62.9
unitig_0.g2740 Utricularia gibba HOM05D006820 ORTHO05D008526 1.7e-78 296.6 238 62.2
ATR0661G540 Amborella trichopoda HOM05D006820 ORTHO05D008526 2.9e-78 295.8 231 62.8
arahy.Tifrunner.gnm1.ann1.696HI2 Arachis hypogaea HOM05D006820 ORTHO05D008526 8.4e-78 294.3 226 62.4
PSO017G7138 Papaver somniferum HOM05D006820 ORTHO05D008526 3.2e-77 292.4 221 64.7
VMungo0647G2489 Vigna mungo HOM05D006820 ORTHO05D008526 3.2e-77 292.4 221 60.6
Gohir.A12G033700 Gossypium hirsutum HOM05D006820 ORTHO05D008526 1.2e-76 290.4 222 64.4
FAN01G0447 Fragaria x ananassa HOM05D006820 ORTHO05D008526 3.0e-75 285.8 242 59.5
FAN06G4449 Fragaria x ananassa HOM05D006820 ORTHO05D008526 8.6e-75 284.3 242 59.5
Oeu021963.1 Olea europaea HOM05D006820 ORTHO05D008526 8.6e-75 284.3 221 67.4
FAN03G3185 Fragaria x ananassa HOM05D006820 ORTHO05D008526 5.6e-74 281.6 247 58.3
PSO675G0855 Papaver somniferum HOM05D006820 ORTHO05D008526 8.9e-72 274.2 223 61.0
PSO541G2729 Papaver somniferum HOM05D006820 ORTHO05D008526 3.8e-70 268.9 224 59.4
Zm00001eb088270 Zea mays HOM05D006820 ORTHO05D008526 7.8e-68 261.2 244 54.5
SalBow1G3348 Salvia bowleyana HOM05D006820 ORTHO05D008526 1.7e-67 260.0 172 72.1
Rhsim05G0047800 Rhododendron simsii HOM05D006820 ORTHO05D008526 2.8e-65 252.7 233 58.8
Sed0016165 Sechium edule HOM05D006820 ORTHO05D008526 4.8e-65 251.9 169 69.2
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 2.4e-64 249.6 221 52.9
RhsimUnG0142100 Rhododendron simsii HOM05D006820 ORTHO05D008526 2.4e-64 249.6 233 58.4
Gohir.D12G038800 Gossypium hirsutum HOM05D006820 ORTHO05D008526 5.8e-63 245.0 159 69.2
Dinv41882 Davidia involucrata HOM05D006820 ORTHO05D008526 2.9e-62 242.7 141 79.4
MELO3C022591.2 Cucumis melo HOM05D006820 ORTHO05D008526 3.2e-61 239.2 167 65.3
COL.COLO4_17938 Corchorus olitorius HOM05D006820 ORTHO05D008526 1.2e-60 237.3 163 68.7
ClCG02G009990 Citrullus lanatus HOM05D006820 ORTHO05D008526 6.0e-60 235.0 173 64.2
AagrBONN_evm.TU.Sc2ySwM_344.5004 Anthoceros agrestis HOM05D006820 ORTHO05D008526 4.3e-58 228.8 226 50.4
Pp3c6_22700 Physcomitrium patens HOM05D006820 ORTHO05D008526 7.4e-58 228.0 220 53.2
AagrBONN_evm.TU.Sc2ySwM_344.4995 Anthoceros agrestis HOM05D007543 ORTHO05D008526 2.1e-57 226.5 222 50.5
Psat2g001280 Pisum sativum HOM05D006820 ORTHO05D008526 3.1e-56 222.6 158 62.7
PSO170G2156 Papaver somniferum HOM05D006820 ORTHO05D008526 4.0e-56 222.2 173 62.4
Mapoly0119s0027 Marchantia polymorpha HOM05D006820 ORTHO05D008526 7.6e-55 218.0 222 49.1
SMO347G0521 Selaginella moellendorffii HOM05D006820 ORTHO05D008526 8.4e-54 214.5 224 51.3
HPP92_025502 Vanilla planifolia HOM05D006820 ORTHO05D008526 2.4e-53 213.0 170 61.8
HPP92_025534 Vanilla planifolia HOM05D006820 ORTHO05D008526 2.7e-52 209.5 167 62.3
C03p77090 Brassica napus HOM05D000564 ORTHO05D002780 1.0e-43 181.0 117 70.1
CBR_g8644 Chara braunii HOM05D006820 ORTHO05D008526 3.9e-43 179.1 249 40.6
A08p24230 Brassica napus HOM05D000564 ORTHO05D002780 1.1e-42 177.6 117 67.5
Cc09_g10680 Coffea canephora HOM05D006820 ORTHO05D008526 1.9e-42 176.8 108 74.1
arahy.Tifrunner.gnm1.ann1.MXMJ8X Arachis hypogaea HOM05D006820 ORTHO05D008526 2.2e-41 173.3 143 58.0
CSS0041656 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 3.7e-41 172.6 134 66.4
MD05G1133800 Malus domestica HOM05D006820 ORTHO05D008526 4.2e-37 159.1 147 60.5
MD10G1042800 Malus domestica HOM05D006820 ORTHO05D008526 1.3e-35 154.1 144 58.3
Cpa.g.sc20.200 Carica papaya HOM05D006820 ORTHO05D008526 3.0e-35 152.9 127 57.5
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 3.9e-27 125.9 223 35.0
arahy.Tifrunner.gnm1.ann1.JU0VI1 Arachis hypogaea HOM05D006820 ORTHO05D008526 8.8e-27 124.8 106 56.6
AUR62010100 Chenopodium quinoa HOM05D000002 ORTHO05D000001 1.7e-17 94.0 63 66.7
A09p68760 Brassica napus HOM05D006820 ORTHO05D008526 1.2e-15 87.8 90 44.4
BraA09t42215Z Brassica rapa HOM05D006820 ORTHO05D008526 1.2e-15 87.8 90 44.4
Cc00_g33760 Coffea canephora HOM05D006820 ORTHO05D008526 1.1e-13 81.3 52 71.2
Cc09_g10670 Coffea canephora HOM05D006820 ORTHO05D008526 1.1e-13 81.3 52 71.2
arahy.Tifrunner.gnm1.ann1.E18LML Arachis hypogaea HOM05D006820 ORTHO05D008526 1.7e-09 67.4 47 66.0
Mapoly0091s0071 Marchantia polymorpha HOM05D006935 ORTHO05D008944 2.8e-09 66.6 230 27.4
TPR.G37522 Trifolium pratense HOM05D006935 ORTHO05D008944 3.5e-07 59.7 232 28.4
Medtr4g106970 Medicago truncatula HOM05D006935 ORTHO05D008944 7.7e-07 58.5 234 29.1
Os01g0660900 Oryza sativa ssp. japonica HOM05D006935 ORTHO05D008944 7.7e-07 58.5 226 26.5
Lj4g0026943 Lotus japonicus HOM05D006935 ORTHO05D008944 1.0e-06 58.2 226 28.3
Phvul.003G199600 Phaseolus vulgaris HOM05D006935 ORTHO05D008944 1.0e-06 58.2 226 27.4
VMungo1215G2532 Vigna mungo HOM05D006935 ORTHO05D008944 1.3e-06 57.8 226 27.4
Hund09430 Selenicereus undatus HOM05D006935 ORTHO05D004872 2.2e-06 57.0 228 28.5
Sc12g0005390 Simmondsia chinensis HOM05D006935 ORTHO05D008944 2.2e-06 57.0 226 26.5
Lsat_1_v5_gn_5_39280 Lactuca sativa HOM05D002021 ORTHO05D002077 2.9e-06 56.6 189 27.5
Zm00001eb359580 Zea mays HOM05D006935 ORTHO05D008944 2.9e-06 56.6 226 26.1


User provided reference genes

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