Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 0.0e+00 1578.1 771 100.0
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 0.0e+00 1474.9 772 93.0
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 0.0e+00 1472.2 772 92.7
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 0.0e+00 1470.3 772 93.0
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1412.1 772 89.4
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1400.2 773 89.0
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 0.0e+00 1374.0 774 87.7
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 0.0e+00 1240.3 774 78.7
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 0.0e+00 1221.8 773 76.1
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1206.4 776 76.5
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1206.0 776 76.5
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1201.4 772 76.3
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 0.0e+00 1184.5 790 74.7
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1174.1 776 74.6
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 0.0e+00 1173.3 763 75.8
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 0.0e+00 1169.5 803 73.2
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 0.0e+00 1164.8 778 73.4
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 0.0e+00 1150.2 776 73.7
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1141.7 772 73.8
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1140.9 786 72.8
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 0.0e+00 1135.6 769 72.8
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 0.0e+00 1127.1 774 72.1
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1124.4 773 71.4
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 0.0e+00 1121.7 770 71.9
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 0.0e+00 1118.2 777 71.0
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 0.0e+00 1117.1 783 70.8
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1103.2 769 70.9
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1101.3 770 69.9
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 0.0e+00 1099.7 771 70.0
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1099.7 773 71.3
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1099.3 776 70.6
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1097.4 769 70.6
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 0.0e+00 1095.9 775 70.5
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 0.0e+00 1092.8 772 70.5
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1090.9 770 70.0
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1087.8 774 70.2
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1083.9 770 70.1
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1083.6 777 69.6
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1083.2 771 69.9
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1082.8 776 69.5
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1082.8 772 70.6
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 0.0e+00 1082.8 774 69.6
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1081.6 777 69.1
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 0.0e+00 1080.9 774 70.2
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 0.0e+00 1080.5 771 69.9
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 0.0e+00 1078.2 772 68.7
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 0.0e+00 1076.2 774 69.6
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1076.2 774 69.6
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 5.3e-312 1073.5 772 69.0
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 3.7e-311 1071.2 770 69.9
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 4.7e-311 1070.8 774 69.4
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 1.4e-310 1069.3 779 68.5
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 5.2e-310 1067.4 774 69.1
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 6.8e-310 1067.0 771 69.4
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 8.9e-310 1066.6 775 69.5
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 2.6e-309 1065.1 761 71.0
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 2.6e-309 1065.1 771 67.4
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 2.4e-307 1058.5 770 69.6
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 2.7e-306 1055.0 779 68.7
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 6.0e-306 1053.9 773 69.2
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 1.7e-305 1052.4 779 66.9
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 8.6e-305 1050.0 770 68.2
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 5.6e-304 1047.3 775 66.7
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 3.6e-303 1044.6 778 66.7
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 8.1e-303 1043.5 781 67.5
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.1e-302 1043.1 770 68.1
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 2.3e-302 1042.0 769 67.8
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 2.6e-301 1038.5 770 66.8
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 4.9e-300 1034.2 772 65.7
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 6.4e-300 1033.9 776 68.2
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 3.2e-299 1031.6 771 67.4
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 2.1e-298 1028.9 777 66.4
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 1.1e-296 1023.1 775 66.1
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 1.2e-295 1019.6 779 65.1
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 1.6e-295 1019.2 772 66.3
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 4.7e-295 1017.7 779 65.6
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 8.1e-295 1016.9 803 63.5
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 1.1e-294 1016.5 773 65.2
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 3.4e-293 1011.5 777 64.9
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 9.9e-293 1010.0 774 66.8
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 1.1e-291 1006.5 775 65.5
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 3.2e-291 1005.0 778 66.1
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 2.1e-290 1002.3 775 64.0
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 3.5e-290 1001.5 775 64.0
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 4.6e-290 1001.1 774 65.8
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 6.0e-290 1000.7 773 65.2
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 3.9e-289 998.0 775 64.4
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 6.6e-289 997.3 778 65.3
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 1.1e-288 996.5 775 65.3
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 5.6e-288 994.2 809 62.8
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 3.6e-287 991.5 771 65.4
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 6.2e-287 990.7 775 65.0
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 2.4e-286 988.8 775 64.8
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 4.0e-286 988.0 806 63.0
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 6.9e-286 987.3 776 63.0
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 8.9e-286 986.9 772 64.5
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 3.4e-285 984.9 741 68.3
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 7.1e-283 977.2 761 66.1
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 2.1e-282 975.7 772 64.4
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.3e-281 973.0 781 63.6
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 1.3e-281 973.0 780 63.3
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 1.5e-280 969.5 770 63.2
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 2.5e-280 968.8 770 63.2
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 3.3e-280 968.4 771 63.2
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 4.3e-280 968.0 773 62.2
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 5.6e-280 967.6 781 63.5
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 7.3e-280 967.2 772 63.2
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 4.8e-279 964.5 773 63.1
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 1.1e-278 963.4 771 63.3
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 2.4e-278 962.2 720 68.9
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 3.1e-278 961.8 770 63.0
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 1.5e-277 959.5 776 61.5
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 1.7e-276 956.1 774 62.4
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 2.9e-276 955.3 773 64.0
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 9.3e-275 950.3 754 62.9
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 1.2e-274 949.9 778 62.5
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 7.9e-274 947.2 773 61.6
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 1.8e-273 946.0 761 62.5
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 6.7e-273 944.1 778 61.8
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 1.9e-272 942.6 766 62.0
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 3.3e-272 941.8 767 62.1
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 1.2e-269 933.3 765 62.2
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 1.0e-265 920.2 784 62.2
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 2.3e-265 919.1 728 66.8
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 5.1e-265 917.9 876 57.6
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 3.3e-264 915.2 771 62.0
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 1.3e-263 913.3 789 59.6
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 1.1e-262 910.2 778 60.2
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 3.0e-257 892.1 785 59.1
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 5.1e-257 891.3 781 59.2
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 8.2e-255 884.0 768 60.3
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 4.6e-250 868.2 777 57.0
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 1.5e-245 853.2 755 58.8
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 3.4e-245 852.0 777 59.3
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 7.7e-245 850.9 777 59.2
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 3.7e-231 805.4 703 61.5
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 7.5e-224 781.2 738 55.7
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 1.2e-221 773.9 684 59.6
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 9.5e-195 684.5 772 49.2
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 3.0e-188 662.9 760 47.4
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 3.1e-177 626.3 765 45.1
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 3.9e-172 609.4 777 43.0
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 1.2e-170 604.4 777 45.6
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 2.0e-168 597.0 795 43.3
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 5.8e-168 595.5 442 66.7
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 1.1e-161 574.7 389 71.0
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 1.1e-161 574.7 389 71.0
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 4.0e-161 572.8 399 70.7
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 5.8e-160 568.9 417 67.6
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 2.3e-156 557.0 795 41.5
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 2.2e-138 497.3 272 86.4
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 3.2e-134 483.4 562 46.4
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.3e-130 471.5 466 54.1
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 2.5e-118 430.6 256 80.5
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 8.0e-117 425.6 453 49.2
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 2.7e-104 384.0 747 35.2
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 8.0e-77 292.7 279 54.5
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 2.7e-72 277.7 767 30.5
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 3.9e-63 247.3 288 48.3
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 1.9e-57 228.4 187 62.0
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 2.5e-46 191.4 239 46.4
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.4e-36 159.1 83 80.7
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 1.8e-36 158.7 149 55.7
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.4e-28 132.5 65 84.6
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.0e-23 114.8 165 38.8
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.8e-21 108.2 135 39.3
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 1.1e-14 86.3 73 57.5
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 1.8e-12 79.0 103 41.7
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 3.8e-10 71.2 46 71.7
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 5.0e-10 70.9 66 51.5
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 1.6e-08 65.9 39 71.8


User provided reference genes

Program Settings