Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1715.7 Capsicum annuum HOM05D004979 ORTHO05D006190 3.6e-312 1073.5 522 100.0
CAN.G756.6 Capsicum annuum HOM05D004979 ORTHO05D006190 1.0e-301 1039.3 522 96.6
PGSC0003DMG400001886 Solanum tuberosum HOM05D004979 ORTHO05D006190 8.5e-288 993.0 522 91.2
Solyc04g055190.4 Solanum lycopersicum HOM05D004979 ORTHO05D006190 1.9e-287 991.9 522 90.8
Peaxi162Scf00212g00515 Petunia axillaris HOM05D004979 ORTHO05D006190 1.8e-250 869.0 527 82.7
Oeu061912.1 Olea europaea HOM05D004979 ORTHO05D006190 1.2e-244 849.7 519 76.7
Cc02_g36100 Coffea canephora HOM05D004979 ORTHO05D006190 1.1e-242 843.2 515 77.3
Cc02_g36050 Coffea canephora HOM05D004979 ORTHO05D006190 2.7e-241 838.6 515 76.5
Nitab4.5_0000081g0190 Nicotiana tabacum HOM05D004979 ORTHO05D006190 4.3e-239 831.2 518 79.0
CSS0020926 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 1.7e-235 819.3 513 75.0
CSS0020951 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 2.2e-235 818.9 513 75.2
Actinidia22849 Actinidia chinensis HOM05D004979 ORTHO05D006190 4.1e-234 814.7 514 74.3
Migut.B00894 Erythranthe guttata HOM05D004979 ORTHO05D006190 5.0e-232 807.7 514 74.5
MSTRG.16439 Avicennia marina HOM05D004979 ORTHO05D006190 1.5e-231 806.2 519 73.2
MD08G1246100 Malus domestica HOM05D004979 ORTHO05D006190 1.8e-229 799.3 513 72.9
CANSAT56G2810 Cannabis sativa HOM05D004979 ORTHO05D006190 2.2e-227 792.3 517 72.0
Potri.013G000600 Populus trichocarpa HOM05D004979 ORTHO05D006190 6.4e-227 790.8 515 72.2
QL03p011287 Quercus lobata HOM05D004979 ORTHO05D006190 8.3e-227 790.4 519 72.1
RcHm_v2.0_Chr1g0332651 Rosa chinensis HOM05D004979 ORTHO05D006190 7.0e-226 787.3 513 71.2
MD15G1441300 Malus domestica HOM05D004979 ORTHO05D006190 9.2e-226 786.9 513 71.9
Thecc.05G331000 Theobroma cacao HOM05D004979 ORTHO05D006190 1.2e-225 786.6 514 70.8
Manes.08G106500 Manihot esculenta HOM05D004979 ORTHO05D006190 4.6e-225 784.6 515 72.6
Dinv24526 Davidia involucrata HOM05D004979 ORTHO05D006190 3.9e-224 781.6 513 72.7
Atru.chr12.1512 Acer truncatum HOM05D004979 ORTHO05D006190 1.5e-223 779.6 515 71.5
Sabra13G0000500 Salix brachista HOM05D004979 ORTHO05D006190 3.3e-223 778.5 529 70.9
EL10Ac8g20414 Beta vulgaris HOM05D004979 ORTHO05D006190 4.3e-223 778.1 513 71.3
PGR004G0062 Punica granatum HOM05D004979 ORTHO05D006190 4.3e-223 778.1 513 70.6
FAN01G0279 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.8e-222 775.4 513 70.4
Sed0004859 Sechium edule HOM05D004979 ORTHO05D006190 1.1e-221 773.5 515 70.3
PGR117G0001 Punica granatum HOM05D004979 ORTHO05D006190 1.8e-221 772.7 513 70.2
TWI60G1029 Tripterygium wilfordii HOM05D004979 ORTHO05D006190 8.9e-221 770.4 515 69.1
TPR.G18815 Trifolium pratense HOM05D004979 ORTHO05D006190 1.2e-220 770.0 514 69.5
Ciclev10028175m.g Citrus clementina HOM05D004979 ORTHO05D006190 3.4e-220 768.5 519 70.1
Glyma.10G273100 Glycine max HOM05D004979 ORTHO05D006190 5.8e-220 767.7 513 68.8
TPR.G33173 Trifolium pratense HOM05D004979 ORTHO05D006190 1.3e-219 766.5 514 69.3
CiPaw.01G000500 Carya illinoinensis HOM05D004979 ORTHO05D006190 1.7e-219 766.1 517 70.2
Lalb_Chr04g0254641 Lupinus albus HOM05D004979 ORTHO05D006190 2.2e-219 765.8 514 69.5
ECA234G3247 Erigeron canadensis HOM05D004979 ORTHO05D006190 2.9e-219 765.4 497 71.6
Hund05397 Selenicereus undatus HOM05D004979 ORTHO05D006190 2.9e-219 765.4 490 72.9
PSO357G0276 Papaver somniferum HOM05D004979 ORTHO05D006190 3.7e-219 765.0 512 69.7
Rhsim01G0213000 Rhododendron simsii HOM05D004979 ORTHO05D006190 8.3e-219 763.8 514 71.2
FAN06G2997 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.9e-218 762.7 535 67.5
MELO3C019579.2 Cucumis melo HOM05D004979 ORTHO05D006190 2.4e-218 762.3 514 69.5
Medtr1g110490 Medicago truncatula HOM05D004979 ORTHO05D006190 2.4e-218 762.3 514 68.3
Psat6g226240 Pisum sativum HOM05D004979 ORTHO05D006190 4.1e-218 761.5 513 69.0
PSO170G1924 Papaver somniferum HOM05D004979 ORTHO05D006190 7.1e-218 760.8 512 69.3
CsaV3_6G013140 Cucumis sativus L. HOM05D004979 ORTHO05D006190 1.2e-217 760.0 515 69.7
Gohir.A13G003700 Gossypium hirsutum HOM05D004979 ORTHO05D006190 1.6e-217 759.6 514 69.3
Gohir.D13G003600 Gossypium hirsutum HOM05D004979 ORTHO05D006190 1.6e-217 759.6 517 69.1
Glyma.20G116900 Glycine max HOM05D004979 ORTHO05D006190 2.1e-217 759.2 514 68.5
AL1G67180 Arabidopsis lyrata HOM05D004979 ORTHO05D006190 3.5e-217 758.4 518 66.4
Gorai.013G003500 Gossypium raimondii HOM05D004979 ORTHO05D006190 3.5e-217 758.4 518 69.3
Eucgr.I02672 Eucalyptus grandis HOM05D004979 ORTHO05D006190 1.7e-216 756.1 513 69.0
HanXRQChr11g0327151 Helianthus annuus HOM05D004979 ORTHO05D006190 3.9e-216 755.0 522 70.1
THA.LOC104816839 Tarenaya hassleriana HOM05D004979 ORTHO05D006190 3.9e-216 755.0 510 69.8
arahy.Tifrunner.gnm1.ann1.4I4LKP Arachis hypogaea HOM05D004979 ORTHO05D006190 1.5e-215 753.1 514 68.7
Lj5g0020513 Lotus japonicus HOM05D004979 ORTHO05D006190 5.6e-215 751.1 505 69.3
VMungo0720G1588 Vigna mungo HOM05D004979 ORTHO05D006190 5.6e-215 751.1 514 67.7
Thhalv10023409m.g Eutrema salsugineum HOM05D004979 ORTHO05D006190 1.2e-214 750.0 518 67.2
CARHR054720 Cardamine hirsuta HOM05D004979 ORTHO05D006190 4.7e-214 748.0 512 67.4
Carub.0002s0703 Capsella rubella HOM05D004979 ORTHO05D006190 3.1e-213 745.3 518 66.4
Aqoxy1G02435 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 4.0e-213 745.0 515 68.7
AT1G57600 Arabidopsis thaliana HOM05D004979 ORTHO05D006190 1.5e-212 743.0 512 65.8
Sp2g05910 Schrenkiella parvula HOM05D004979 ORTHO05D006190 1.9e-210 736.1 513 67.4
SpUn0028_0030 Schrenkiella parvula HOM05D004979 ORTHO05D006190 1.9e-210 736.1 513 67.4
BcaB07g31145 Brassica carinata HOM05D004979 ORTHO05D006190 7.1e-210 734.2 519 65.7
BcaC04g22085 Brassica carinata HOM05D004979 ORTHO05D006190 7.1e-210 734.2 513 66.7
BolC9t55284H Brassica oleracea HOM05D004979 ORTHO05D006190 9.2e-210 733.8 513 66.7
BraA09t37507Z Brassica rapa HOM05D004979 ORTHO05D006190 1.2e-209 733.4 513 66.3
arahy.Tifrunner.gnm1.ann1.Q958TZ Arachis hypogaea HOM05D004979 ORTHO05D006190 2.7e-209 732.3 572 62.8
Phvul.007G028500 Phaseolus vulgaris HOM05D004979 ORTHO05D006190 4.6e-209 731.5 514 67.1
Nitab4.5_0002303g0020 Nicotiana tabacum HOM05D004979 ORTHO05D006190 1.1e-207 726.9 525 70.1
unitig_22.g6127 Utricularia gibba HOM05D004979 ORTHO05D006190 4.3e-207 724.9 560 64.1
A09p18870 Brassica napus HOM05D004979 ORTHO05D006190 4.7e-206 721.5 544 63.1
C09p23650 Brassica napus HOM05D004979 ORTHO05D006190 8.1e-206 720.7 537 63.7
Lj4g0015757 Lotus japonicus HOM05D004979 ORTHO05D006190 1.4e-205 719.9 474 70.0
Duzib114G0072 Durio zibethinus HOM05D004979 ORTHO05D006190 3.1e-205 718.8 510 68.6
AUR62014845 Chenopodium quinoa HOM05D004979 ORTHO05D006190 2.6e-204 715.7 513 67.3
Aa31LG2G11270 Aethionema arabicum HOM05D004979 ORTHO05D006190 8.1e-198 694.1 516 64.7
SGA_v2.0_scaffold279G46769 Striga asiatica HOM05D004979 ORTHO05D006190 2.0e-196 689.5 524 65.3
Os05g0144000 Oryza sativa ssp. japonica HOM05D004979 ORTHO05D006190 7.6e-196 687.6 514 62.3
ATR0730G180 Amborella trichopoda HOM05D004979 ORTHO05D006190 2.2e-195 686.0 518 61.2
Zm00001eb108680 Zea mays HOM05D004979 ORTHO05D006190 1.4e-194 683.3 514 61.3
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 3.2e-194 682.2 685 52.4
vmacro22232 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 2.1e-193 679.5 545 62.9
TAR636G2920 Trochodendron aralioides HOM05D004979 ORTHO05D006190 4.6e-193 678.3 435 74.7
SEGI_04903 Sequoiadendron giganteum HOM05D004979 ORTHO05D006190 2.2e-187 659.4 520 59.4
Sc05g0004380 Simmondsia chinensis HOM05D004979 ORTHO05D006190 1.1e-186 657.1 434 70.3
Lsat_1_v5_gn_5_7121 Lactuca sativa HOM05D004979 ORTHO05D006190 2.1e-185 652.9 500 65.0
Prupe.1G583400 Prunus persica HOM05D004979 ORTHO05D006190 3.5e-185 652.1 397 75.6
Haze_12430 Corylus avellana HOM05D004979 ORTHO05D006190 4.6e-185 651.7 582 57.9
Lj9A238G55 Lonicera japonica HOM05D004979 ORTHO05D006190 3.0e-184 649.0 496 65.3
FAN03G1290 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.8e-179 632.1 576 56.1
FAN23G0202 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.5e-178 629.4 516 60.7
FvH4_7g05560 Fragaria vesca HOM05D004979 ORTHO05D006190 8.7e-176 620.9 391 72.1
HPP92_023772 Vanilla planifolia HOM05D004979 ORTHO05D006190 1.1e-167 594.0 420 64.8
Nn7g38157 Nelumbo nucifera HOM05D004979 ORTHO05D006190 1.2e-161 573.9 487 59.3
Mapoly0050s0014 Marchantia polymorpha HOM05D004979 ORTHO05D006190 5.1e-160 568.5 514 54.5
GSVIVG01007211001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.8e-157 560.1 363 72.2
Pp3c2_38270 Physcomitrium patens HOM05D004979 ORTHO05D006190 1.4e-154 550.4 531 50.8
SalBow5G4822 Salvia bowleyana HOM05D004979 ORTHO05D006190 2.5e-154 549.7 338 75.1
SMO145G0201 Selaginella moellendorffii HOM05D004979 ORTHO05D006190 1.4e-149 533.9 508 53.1
GSVIVG01006954001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.3e-147 527.3 306 79.7
DCAR_006591 Daucus carota HOM05D004979 ORTHO05D006190 5.7e-143 511.9 514 52.5
SalBow3G2171 Salvia bowleyana HOM05D004979 ORTHO05D006190 4.1e-141 505.8 354 68.4
FAN10G2429 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.0e-135 486.9 513 51.1
Lj5C315T9 Lonicera japonica HOM05D004979 ORTHO05D006190 7.5e-135 485.0 286 78.0
CBR_g16989 Chara braunii HOM05D004979 ORTHO05D006190 1.5e-130 470.7 549 44.8
Sopen04g025050 Solanum pennellii HOM05D004979 ORTHO05D006190 6.1e-129 465.3 236 94.1
AagrBONN_evm.TU.Sc2ySwM_344.2018 Anthoceros agrestis HOM05D004979 ORTHO05D006190 1.0e-128 464.5 460 50.2
Rhsim04G0165200 Rhododendron simsii HOM05D004979 ORTHO05D006190 6.3e-126 455.3 349 64.8
GSVIVG01002014001 Vitis vinifera HOM05D004979 ORTHO05D006190 7.8e-124 448.4 252 81.0
AUR62017041 Chenopodium quinoa HOM05D004979 ORTHO05D006190 2.5e-122 443.4 342 63.7
Hma1.2p1_0759F.1_g213770 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 2.9e-110 403.3 228 79.8
Hma1.2p1_0759F.1_g213813 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 2.9e-110 403.3 228 79.8
COL.COLO4_28214 Corchorus olitorius HOM05D004979 ORTHO05D006190 4.9e-110 402.5 286 65.7
Ca_17455_v3 Cicer arietinum L. HOM05D004979 ORTHO05D006190 9.5e-106 388.3 228 75.9
Dinv22420 Davidia involucrata HOM05D004979 ORTHO05D006190 7.3e-82 308.9 526 37.8
CAN.G1164.35 Capsicum annuum HOM05D004979 ORTHO05D006190 1.6e-81 307.8 169 88.8
Cpa.g.sc46.4 Carica papaya HOM05D004979 ORTHO05D006190 1.2e-76 291.6 166 78.9
Cre14.g617150 Chlamydomonas reinhardtii HOM05D004979 ORTHO05D006190 1.4e-72 278.1 529 35.0
GSVIVG01007210001 Vitis vinifera HOM05D004979 ORTHO05D006190 4.2e-69 266.5 198 67.2
Cfa022844 Carpinus fangiana HOM05D004979 ORTHO05D006190 7.1e-69 265.8 550 32.0
GSVIVG01007430001 Vitis vinifera HOM05D004979 ORTHO05D006190 7.1e-69 265.8 198 67.7
PRCOL_00000039 Prasinoderma coloniale HOM05D004979 ORTHO05D006190 9.3e-69 265.4 510 34.9
Actinidia01657 Actinidia chinensis HOM05D004979 ORTHO05D006190 4.5e-63 246.5 353 43.1
MCO11G558 Micromonas commoda HOM05D004979 ORTHO05D006190 5.8e-63 246.1 490 34.1
Cpa.g.sc46.2 Carica papaya HOM05D004979 ORTHO05D006190 1.0e-62 245.4 240 54.6
HanXRQChr14g0439781 Helianthus annuus HOM05D004979 ORTHO05D006190 1.9e-58 231.1 195 57.4
SHI20228 Sapria himalayana HOM05D004979 ORTHO05D006190 6.9e-48 196.1 262 42.0
DCAR_032148 Daucus carota HOM05D004979 ORTHO05D006190 2.0e-39 167.9 332 34.3
ClCG03G002030 Citrullus lanatus HOM05D004979 ORTHO05D006190 5.9e-39 166.4 157 57.3
Lsat_1_v5_gn_8_74721 Lactuca sativa HOM05D004979 ORTHO05D006190 1.8e-35 154.8 85 75.3
Actinidia27722 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.2e-31 142.1 196 43.4
Lsat_1_v5_gn_8_74741 Lactuca sativa HOM05D004979 ORTHO05D006190 5.0e-30 136.7 105 65.7
QL03p011256 Quercus lobata HOM05D004979 ORTHO05D006190 2.5e-29 134.4 80 77.5
MBI07_g39750_MAGBIO Magnolia biondii HOM05D004979 ORTHO05D006190 3.6e-28 130.6 109 61.5
CDE04G1277 Ceratophyllum demersum HOM05D004979 ORTHO05D006190 6.1e-28 129.8 99 61.6
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 5.7e-26 123.2 119 50.4
GSVIVG01004371001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.6e-23 115.2 103 61.2
FAN19G1386 Fragaria x ananassa HOM05D004979 ORTHO05D006190 5.0e-22 110.2 85 62.4
Rhsim05G0125000 Rhododendron simsii HOM05D004979 ORTHO05D006190 8.8e-19 99.4 270 31.1
Aqoxy2G02599 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 1.1e-13 82.4 41 78.0
AagrBONN_evm.TU.Sc2ySwM_117.715 Anthoceros agrestis HOM05D004979 ORTHO05D006190 8.0e-12 76.3 98 48.0
SHI20227 Sapria himalayana HOM05D004979 ORTHO05D006190 1.6e-07 62.0 51 54.9
Sc05g0003730 Simmondsia chinensis HOM05D004979 ORTHO05D006190 7.8e-07 59.7 80 40.0


User provided reference genes

Program Settings