Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G171.7 Capsicum annuum HOM05D000730 ORTHO05D000578 3.6e-126 454.9 226 100.0
Peaxi162Scf00714g00334 Petunia axillaris HOM05D000730 ORTHO05D000578 1.5e-39 167.2 177 53.1
CAN.G981.10 Capsicum annuum HOM05D000730 ORTHO05D000578 1.4e-37 160.6 211 45.5
Nitab4.5_0003924g0080 Nicotiana tabacum HOM05D000730 ORTHO05D000578 6.9e-37 158.3 208 45.2
Nitab4.5_0005213g0040 Nicotiana tabacum HOM05D000730 ORTHO05D000578 4.5e-36 155.6 208 44.7
Solyc08g080520.4 Solanum lycopersicum HOM05D000730 ORTHO05D000578 1.3e-35 154.1 208 45.7
Sopen08g028840 Solanum pennellii HOM05D000730 ORTHO05D000578 1.3e-35 154.1 208 45.7
Oeu029784.2 Olea europaea HOM05D000730 ORTHO05D000578 7.7e-20 101.7 187 33.7
Dinv38994 Davidia involucrata HOM05D000730 ORTHO05D000578 2.2e-19 100.1 209 31.6
Cc08_g14160 Coffea canephora HOM05D000730 ORTHO05D000578 2.9e-19 99.8 207 32.4
Migut.A00938 Erythranthe guttata HOM05D000730 ORTHO05D000578 3.0e-16 89.7 192 30.7
CSS0035856 Camellia sinensis var. sinensis HOM05D000730 ORTHO05D000578 2.0e-15 87.0 195 30.3
ECA246G5324 Erigeron canadensis HOM05D000730 ORTHO05D000578 4.4e-15 85.9 65 63.1
Atru.chr9.1560 Acer truncatum HOM05D000730 ORTHO05D000578 7.5e-15 85.1 87 47.1
DCAR_004665 Daucus carota HOM05D000730 ORTHO05D000578 1.3e-14 84.3 181 38.1
Actinidia02031 Actinidia chinensis HOM05D000730 ORTHO05D000578 2.2e-14 83.6 188 29.8
CAN.G606.67 Capsicum annuum HOM05D000470 ORTHO05D000348 6.3e-14 82.0 46 91.3
Solyc01g106900.3 Solanum lycopersicum HOM05D000470 ORTHO05D000348 6.3e-14 82.0 46 91.3
Sopen01g049180 Solanum pennellii HOM05D000470 ORTHO05D000348 6.3e-14 82.0 46 91.3
PGSC0003DMG400025740 Solanum tuberosum HOM05D000470 ORTHO05D000348 6.3e-14 82.0 46 91.3
CiPaw.11G139500 Carya illinoinensis HOM05D000730 ORTHO05D000578 1.1e-13 81.3 78 52.6
HanXRQChr06g0165441 Helianthus annuus HOM05D000730 ORTHO05D000578 1.1e-13 81.3 65 60.0
Lj8A236T44 Lonicera japonica HOM05D000730 ORTHO05D000578 1.1e-13 81.3 86 48.8
Nitab4.5_0002040g0090 Nicotiana tabacum HOM05D000470 ORTHO05D000348 2.4e-13 80.1 46 89.1
Nitab4.5_0007781g0030 Nicotiana tabacum HOM05D000470 ORTHO05D000348 2.4e-13 80.1 46 89.1
COL.COLO4_05255 Corchorus olitorius HOM05D000730 ORTHO05D000578 5.4e-13 79.0 192 29.2
Peaxi162Scf00016g03019 Petunia axillaris HOM05D000470 ORTHO05D000348 5.4e-13 79.0 46 87.0
QL12p017589 Quercus lobata HOM05D000730 ORTHO05D000578 7.0e-13 78.6 81 48.1
Gohir.D03G153300 Gossypium hirsutum HOM05D000730 ORTHO05D000578 9.1e-13 78.2 193 28.5
GSVIVG01019827001 Vitis vinifera HOM05D000730 ORTHO05D000578 9.1e-13 78.2 213 29.1
Gohir.A03G018300 Gossypium hirsutum HOM05D000730 ORTHO05D000578 1.6e-12 77.4 193 28.5
SalBow6G0430 Salvia bowleyana HOM05D000730 ORTHO05D000578 2.7e-12 76.6 65 56.9
Manes.01G065400 Manihot esculenta HOM05D000730 ORTHO05D000578 3.5e-12 76.3 215 27.4
Gorai.003G160900 Gossypium raimondii HOM05D000730 ORTHO05D000578 4.5e-12 75.9 193 28.0
Haze_08931 Corylus avellana HOM05D000730 ORTHO05D000578 5.9e-12 75.5 82 47.6
Cfa012119 Carpinus fangiana HOM05D000730 ORTHO05D000578 1.3e-11 74.3 82 45.1
THA.LOC104806377 Tarenaya hassleriana HOM05D000730 ORTHO05D000578 2.9e-11 73.2 87 42.5
Lsat_1_v5_gn_3_8441 Lactuca sativa HOM05D000730 ORTHO05D000578 5.0e-11 72.4 90 44.4
MSTRG.26616 Avicennia marina HOM05D000470 ORTHO05D000348 6.5e-11 72.0 46 76.1
PGR042G2616 Punica granatum HOM05D000730 ORTHO05D000578 1.1e-10 71.2 64 53.1
EL10Ac5g12746 Beta vulgaris HOM05D000730 ORTHO05D000578 1.5e-10 70.9 64 54.7
CAN.G537.3 Capsicum annuum HOM05D000470 ORTHO05D000348 3.2e-10 69.7 88 50.0
Sabra01G0081900 Salix brachista HOM05D000730 ORTHO05D000578 3.2e-10 69.7 194 26.8
AL6G46270 Arabidopsis lyrata HOM05D000730 ORTHO05D000578 4.2e-10 69.3 65 52.3
AT4G11670 Arabidopsis thaliana HOM05D000730 ORTHO05D000578 4.2e-10 69.3 65 52.3
MD00G1110400 Malus domestica HOM05D000730 ORTHO05D000578 4.2e-10 69.3 76 48.7
AUR62010634 Chenopodium quinoa HOM05D000730 ORTHO05D000578 5.5e-10 68.9 64 51.6
FvH4_5g01750 Fragaria vesca HOM05D000730 ORTHO05D000578 5.5e-10 68.9 66 47.0
FAN18G2185 Fragaria x ananassa HOM05D000730 ORTHO05D000578 5.5e-10 68.9 66 47.0
Prupe.5G093000 Prunus persica HOM05D000730 ORTHO05D000578 5.5e-10 68.9 62 50.0
Dinv21478 Davidia involucrata HOM05D000470 ORTHO05D000348 7.2e-10 68.6 46 76.1
Ciclev10028291m.g Citrus clementina HOM05D000470 ORTHO05D000348 9.4e-10 68.2 46 73.9
FAN08G1404 Fragaria x ananassa HOM05D000730 ORTHO05D000578 9.4e-10 68.2 62 50.0
Sp6g05800 Schrenkiella parvula HOM05D000730 ORTHO05D000578 9.4e-10 68.2 85 42.4
Ah.12g057520 Amaranthus hybridus HOM05D000730 ORTHO05D000578 1.2e-09 67.8 133 36.1
RcHm_v2.0_Chr7g0198971 Rosa chinensis HOM05D000730 ORTHO05D000578 1.2e-09 67.8 66 48.5
Dinv09544 Davidia involucrata HOM05D000470 ORTHO05D000348 1.6e-09 67.4 47 76.6
BcaB01g01672 Brassica carinata HOM05D000730 ORTHO05D000578 2.1e-09 67.0 65 49.2
BcaC04g21166 Brassica carinata HOM05D000730 ORTHO05D000578 2.1e-09 67.0 65 49.2
A09p27470 Brassica napus HOM05D000730 ORTHO05D000578 2.1e-09 67.0 65 49.2
C09p34790 Brassica napus HOM05D000730 ORTHO05D000578 2.1e-09 67.0 65 49.2
BolC9t56324H Brassica oleracea HOM05D000730 ORTHO05D000578 2.1e-09 67.0 65 49.2
BraA09t38315Z Brassica rapa HOM05D000730 ORTHO05D000578 2.1e-09 67.0 65 49.2
Thecc.03G272900 Theobroma cacao HOM05D000730 ORTHO05D000578 2.1e-09 67.0 64 48.4
CANSAT21G0309 Cannabis sativa HOM05D000730 ORTHO05D000578 2.7e-09 66.6 68 45.6
DCAR_029171 Daucus carota HOM05D000470 ORTHO05D000348 2.7e-09 66.6 50 68.0
Thhalv10028371m.g Eutrema salsugineum HOM05D000730 ORTHO05D000578 3.6e-09 66.2 65 47.7
CARHR254700 Cardamine hirsuta HOM05D000730 ORTHO05D000578 4.7e-09 65.9 65 49.2
HanXRQChr03g0073231 Helianthus annuus HOM05D000470 ORTHO05D000348 4.7e-09 65.9 46 69.6
Aqoxy5G03962 Aquilegia oxysepala HOM05D000730 ORTHO05D000578 6.1e-09 65.5 95 41.1
TWI81G0743 Tripterygium wilfordii HOM05D000730 ORTHO05D000578 6.1e-09 65.5 158 26.6
Migut.I00080 Erythranthe guttata HOM05D000470 ORTHO05D000348 1.0e-08 64.7 45 73.3
Potri.001G108400 Populus trichocarpa HOM05D000730 ORTHO05D000578 1.0e-08 64.7 66 47.0
Ciclev10023740m.g Citrus clementina HOM05D000730 ORTHO05D000578 1.4e-08 64.3 61 49.2
ECA240G0850 Erigeron canadensis HOM05D000470 ORTHO05D000348 1.4e-08 64.3 50 68.0
AUR62017277 Chenopodium quinoa HOM05D000730 ORTHO05D000578 2.3e-08 63.5 64 46.9
Lsat_1_v5_gn_5_117101 Lactuca sativa HOM05D000470 ORTHO05D000348 2.3e-08 63.5 50 62.0
Nn5g30631 Nelumbo nucifera HOM05D000470 ORTHO05D000348 2.3e-08 63.5 53 64.2
GSVIVG01037798001 Vitis vinifera HOM05D000470 ORTHO05D000348 2.3e-08 63.5 47 72.3
Manes.07G053800 Manihot esculenta HOM05D000470 ORTHO05D000348 3.0e-08 63.2 45 68.9
Cc01_g07120 Coffea canephora HOM05D000470 ORTHO05D000348 4.0e-08 62.8 46 71.7
THA.LOC104827417 Tarenaya hassleriana HOM05D000470 ORTHO05D000348 4.0e-08 62.8 46 65.2
SalBow5G4884 Salvia bowleyana HOM05D000470 ORTHO05D000348 5.2e-08 62.4 44 70.5
Sc22g0000270 Simmondsia chinensis HOM05D000730 ORTHO05D000578 5.2e-08 62.4 80 37.5
SGA_v2.0_scaffold184G39997 Striga asiatica HOM05D000470 ORTHO05D000348 5.2e-08 62.4 36 86.1
SGA_v2.0_scaffold343G49460 Striga asiatica HOM05D000730 ORTHO05D000578 5.2e-08 62.4 192 26.0
CsaV3_3G003550 Cucumis sativus L. HOM05D000730 ORTHO05D000578 6.8e-08 62.0 83 41.0
CSS0019377 Camellia sinensis var. sinensis HOM05D000470 ORTHO05D000348 8.8e-08 61.6 47 66.0
PGR142G2521 Punica granatum HOM05D000470 ORTHO05D000348 8.8e-08 61.6 47 70.2
QL11p029936 Quercus lobata HOM05D000470 ORTHO05D000348 8.8e-08 61.6 51 60.8
Aa31LG9G10680 Aethionema arabicum HOM05D000730 ORTHO05D000578 1.5e-07 60.8 65 43.1
Cpa.g.sc106.36 Carica papaya HOM05D000470 ORTHO05D000348 1.5e-07 60.8 46 69.6
CiPaw.06G164800 Carya illinoinensis HOM05D000470 ORTHO05D000348 1.5e-07 60.8 47 68.1
SGA_v2.0_scaffold35G14027 Striga asiatica HOM05D000470 ORTHO05D000348 1.5e-07 60.8 36 83.3
Actinidia04392 Actinidia chinensis HOM05D000470 ORTHO05D000348 2.0e-07 60.5 47 66.0
Hma1.2p1_1051F.1_g252030 Hydrangea macrophylla HOM05D000470 ORTHO05D000348 2.0e-07 60.5 50 62.0
Lj5C220G5 Lonicera japonica HOM05D000470 ORTHO05D000348 2.0e-07 60.5 49 69.4
unitig_52.g17226 Utricularia gibba HOM05D000730 ORTHO05D000578 2.0e-07 60.5 60 48.3
unitig_8.g4730 Utricularia gibba HOM05D000470 ORTHO05D000348 2.0e-07 60.5 41 73.2
Aqoxy6G02558 Aquilegia oxysepala HOM05D000470 ORTHO05D000348 2.6e-07 60.1 43 69.8
Manes.10G084800 Manihot esculenta HOM05D000470 ORTHO05D000348 2.6e-07 60.1 50 58.0
Oeu010759.1 Olea europaea HOM05D000470 ORTHO05D000348 2.6e-07 60.1 49 67.3
CARHR095100 Cardamine hirsuta HOM05D000470 ORTHO05D000348 3.4e-07 59.7 46 65.2
MD05G1102700 Malus domestica HOM05D000470 ORTHO05D000348 3.4e-07 59.7 46 69.6
MD10G1108400 Malus domestica HOM05D000470 ORTHO05D000348 3.4e-07 59.7 46 69.6
Oeu038459.1 Olea europaea HOM05D000470 ORTHO05D000348 3.4e-07 59.7 47 68.1
Atru.chr5.2323 Acer truncatum HOM05D000470 ORTHO05D000348 4.4e-07 59.3 46 63.0
Migut.L01813 Erythranthe guttata HOM05D000470 ORTHO05D000348 4.4e-07 59.3 44 63.6
FAN04G2748 Fragaria x ananassa HOM05D000730 ORTHO05D000578 4.4e-07 59.3 80 38.8
ATR0757G158 Amborella trichopoda HOM05D000730 ORTHO05D000578 5.7e-07 58.9 85 42.4
Cfa004673 Carpinus fangiana HOM05D000470 ORTHO05D000348 5.7e-07 58.9 46 69.6
Potri.009G086300 Populus trichocarpa HOM05D000470 ORTHO05D000348 5.7e-07 58.9 46 65.2
Sabra09G0065900 Salix brachista HOM05D000470 ORTHO05D000348 5.7e-07 58.9 46 65.2
Sabra09G0066200 Salix brachista HOM05D000470 ORTHO05D000348 5.7e-07 58.9 46 65.2
TAR375G0386 Trochodendron aralioides HOM05D000730 ORTHO05D000578 5.7e-07 58.9 62 48.4
Thhalv10020646m.g Eutrema salsugineum HOM05D000470 ORTHO05D000348 7.5e-07 58.5 43 65.1
AL3G33080 Arabidopsis lyrata HOM05D000470 ORTHO05D000348 9.8e-07 58.2 37 78.4
AT3G19640 Arabidopsis thaliana HOM05D000470 ORTHO05D000348 9.8e-07 58.2 37 78.4
BcaB06g26034 Brassica carinata HOM05D000470 ORTHO05D000348 9.8e-07 58.2 46 60.9
BcaC05g28439 Brassica carinata HOM05D000470 ORTHO05D000348 9.8e-07 58.2 46 60.9
A05p29950 Brassica napus HOM05D000470 ORTHO05D000348 9.8e-07 58.2 46 60.9
C05p45190 Brassica napus HOM05D000470 ORTHO05D000348 9.8e-07 58.2 46 60.9
BraA05t21840Z Brassica rapa HOM05D000470 ORTHO05D000348 9.8e-07 58.2 46 60.9
Carub.0003s1951 Capsella rubella HOM05D000470 ORTHO05D000348 9.8e-07 58.2 37 78.4
MELO3C014023.2 Cucumis melo HOM05D000730 ORTHO05D000578 9.8e-07 58.2 83 38.6
ECA234G2160 Erigeron canadensis HOM05D000470 ORTHO05D000348 9.8e-07 58.2 51 62.7
AUR62027020 Chenopodium quinoa HOM05D000470 ORTHO05D000348 1.3e-06 57.8 47 66.0
Sc12g0006690 Simmondsia chinensis HOM05D000470 ORTHO05D000348 1.3e-06 57.8 36 86.1
Sc18g0007370 Simmondsia chinensis HOM05D000470 ORTHO05D000348 1.3e-06 57.8 37 81.1
Sc18g0007430 Simmondsia chinensis HOM05D000470 ORTHO05D000348 1.3e-06 57.8 37 81.1
EL10Ac9g22183 Beta vulgaris HOM05D000470 ORTHO05D000348 1.7e-06 57.4 47 68.1
AUR62030861 Chenopodium quinoa HOM05D000470 ORTHO05D000348 1.7e-06 57.4 38 78.9
ClCG00G001770 Citrullus lanatus HOM05D000730 ORTHO05D000578 1.7e-06 57.4 83 37.3
MELO3C018529.2 Cucumis melo HOM05D000470 ORTHO05D000348 1.7e-06 57.4 46 65.2
CsaV3_7G007710 Cucumis sativus L. HOM05D000470 ORTHO05D000348 1.7e-06 57.4 46 65.2
Nn6g34206 Nelumbo nucifera HOM05D000730 ORTHO05D000578 1.7e-06 57.4 69 42.0
Rhsim05G0091600 Rhododendron simsii HOM05D000470 ORTHO05D000348 1.7e-06 57.4 47 66.0
Rhsim05G0092600 Rhododendron simsii HOM05D000470 ORTHO05D000348 1.7e-06 57.4 47 66.0
Sp3g17680 Schrenkiella parvula HOM05D000470 ORTHO05D000348 1.7e-06 57.4 37 75.7
Sed0024052 Sechium edule HOM05D000470 ORTHO05D000348 1.7e-06 57.4 47 68.1
Ciclev10028752m.g Citrus clementina HOM05D000470 ORTHO05D000348 2.2e-06 57.0 36 77.8
ECA234G3249 Erigeron canadensis HOM05D000470 ORTHO05D000348 2.2e-06 57.0 46 65.2
FAN16G0181 Fragaria x ananassa HOM05D000470 ORTHO05D000348 2.2e-06 57.0 51 62.7
Phvul.002G051200 Phaseolus vulgaris HOM05D000470 ORTHO05D000348 2.2e-06 57.0 45 73.3
Prupe.8G147300 Prunus persica HOM05D000470 ORTHO05D000348 2.2e-06 57.0 46 65.2
SEGI_18283 Sequoiadendron giganteum HOM05D000470 ORTHO05D000348 2.2e-06 57.0 42 73.8
SEGI_31922 Sequoiadendron giganteum HOM05D000470 ORTHO05D000348 2.2e-06 57.0 42 73.8
Aa31LG8G6420 Aethionema arabicum HOM05D000470 ORTHO05D000348 2.8e-06 56.6 46 60.9
ClCG00G000280 Citrullus lanatus HOM05D000730 ORTHO05D000578 2.8e-06 56.6 83 37.3
ClCG10G003540 Citrullus lanatus HOM05D000730 ORTHO05D000578 2.8e-06 56.6 83 37.3
FvH4_3g18840 Fragaria vesca HOM05D000470 ORTHO05D000348 2.8e-06 56.6 51 62.7
HanXRQChr10g0290761 Helianthus annuus HOM05D000470 ORTHO05D000348 2.8e-06 56.6 52 59.6
QL11p029924 Quercus lobata HOM05D000470 ORTHO05D000348 2.8e-06 56.6 47 59.6
TWI59G1378 Tripterygium wilfordii HOM05D000470 ORTHO05D000348 2.8e-06 56.6 49 67.3
CANSAT25G0618 Cannabis sativa HOM05D000470 ORTHO05D000348 3.7e-06 56.2 38 78.9
CANSAT25G1953 Cannabis sativa HOM05D000470 ORTHO05D000348 3.7e-06 56.2 38 78.9
Hund06509 Selenicereus undatus HOM05D000470 ORTHO05D000348 3.7e-06 56.2 51 62.7
Thecc.02G119000 Theobroma cacao HOM05D000470 ORTHO05D000348 3.7e-06 56.2 46 65.2
unitig_744.g24705 Utricularia gibba HOM05D000470 ORTHO05D000348 3.7e-06 56.2 45 64.4
ClCG02G007110 Citrullus lanatus HOM05D000470 ORTHO05D000348 4.9e-06 55.8 46 63.0
Gorai.002G010900 Gossypium raimondii HOM05D000470 ORTHO05D000348 4.9e-06 55.8 92 43.5
Sed0026891 Sechium edule HOM05D000730 ORTHO05D000578 4.9e-06 55.8 61 45.9
FAN11G0195 Fragaria x ananassa HOM05D000470 ORTHO05D000348 6.3e-06 55.5 51 60.8
Eucgr.E00552 Eucalyptus grandis HOM05D000730 ORTHO05D000578 8.3e-06 55.1 107 35.5


User provided reference genes

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