Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1705.3 Capsicum annuum HOM05D002808 ORTHO05D003135 3.0e-177 625.2 338 100.0
Solyc02g078660.4 Solanum lycopersicum HOM05D002808 ORTHO05D003135 5.6e-115 418.3 284 81.3
Sopen02g023520 Solanum pennellii HOM05D002808 ORTHO05D003135 5.6e-115 418.3 284 81.3
Peaxi162Scf00748g00011 Petunia axillaris HOM05D002808 ORTHO05D003135 2.8e-106 389.4 286 75.5
Nitab4.5_0009790g0010 Nicotiana tabacum HOM05D002808 ORTHO05D003135 8.6e-92 341.3 284 70.8
Peaxi162Scf00031g00821 Petunia axillaris HOM05D002808 ORTHO05D003135 3.2e-70 269.6 247 61.9
Nitab4.5_0001820g0170 Nicotiana tabacum HOM05D002808 ORTHO05D003135 1.9e-67 260.4 151 84.8
PGSC0003DMG400022806 Solanum tuberosum HOM05D002808 ORTHO05D003135 4.5e-64 249.2 264 55.7
Sopen10g004920 Solanum pennellii HOM05D002808 ORTHO05D003135 1.4e-62 244.2 270 52.2
Solyc10g009140.3 Solanum lycopersicum HOM05D002808 ORTHO05D003135 1.9e-62 243.8 270 51.5
CAN.G289.35 Capsicum annuum HOM05D002808 ORTHO05D003135 4.5e-56 222.6 271 49.8
Cc09_g10780 Coffea canephora HOM05D002808 ORTHO05D003135 7.6e-56 221.9 248 51.6
Cc02_g12840 Coffea canephora HOM05D002808 ORTHO05D003135 1.0e-55 221.5 244 52.0
PGSC0003DMG400026858 Solanum tuberosum HOM05D002808 ORTHO05D003135 5.0e-55 219.2 266 53.4
Peaxi162Scf01021g00005 Petunia axillaris HOM05D002808 ORTHO05D003135 6.5e-55 218.8 283 51.9
Solyc03g006530.3 Solanum lycopersicum HOM05D002808 ORTHO05D003135 8.5e-55 218.4 273 52.7
Dinv07522 Davidia involucrata HOM05D002808 ORTHO05D003135 1.2e-53 214.5 253 49.0
Nitab4.5_0003341g0020 Nicotiana tabacum HOM05D002808 ORTHO05D003135 1.6e-53 214.2 267 50.6
Sopen03g002530 Solanum pennellii HOM05D002808 ORTHO05D003135 1.8e-52 210.7 270 51.9
CAN.G1398.10 Capsicum annuum HOM05D002808 ORTHO05D003135 9.7e-51 204.9 150 82.7
Actinidia01909 Actinidia chinensis HOM05D002808 ORTHO05D003135 8.2e-50 201.8 237 49.4
Nitab4.5_0006098g0010 Nicotiana tabacum HOM05D002808 ORTHO05D003135 1.4e-49 201.1 262 49.6
Oeu038236.1 Olea europaea HOM05D002808 ORTHO05D003135 5.3e-49 199.1 242 47.9
MSTRG.7317 Avicennia marina HOM05D002808 ORTHO05D003135 1.5e-48 197.6 255 46.3
SGA_v2.0_scaffold22G09764 Striga asiatica HOM05D002808 ORTHO05D003135 2.0e-48 197.2 267 46.1
RhsimUnG0043100 Rhododendron simsii HOM05D002808 ORTHO05D003135 7.7e-48 195.3 282 42.9
SalBow8G4287 Salvia bowleyana HOM05D002808 ORTHO05D003135 3.0e-44 183.3 281 42.7
SalBow8G5370 Salvia bowleyana HOM05D002808 ORTHO05D003135 3.0e-44 183.3 281 42.7
CSS0000867 Camellia sinensis var. sinensis HOM05D002808 ORTHO05D003135 2.0e-43 180.6 257 43.2
Lj1A1209T61 Lonicera japonica HOM05D002808 ORTHO05D003135 2.4e-41 173.7 296 37.5
TAR627G0014 Trochodendron aralioides HOM05D002808 ORTHO05D003135 5.0e-39 166.0 242 43.8
vmacro03837 Vaccinium macrocarpon HOM05D002808 ORTHO05D003135 5.5e-38 162.5 272 39.3
Aqoxy1G02592 Aquilegia oxysepala HOM05D002808 ORTHO05D003135 2.0e-35 154.1 235 40.4
Duzib235G0556 Durio zibethinus HOM05D002808 ORTHO05D003135 3.3e-35 153.3 239 39.3
TAR626G1215 Trochodendron aralioides HOM05D002808 ORTHO05D003135 3.3e-35 153.3 263 39.5
TAR626G1282 Trochodendron aralioides HOM05D002808 ORTHO05D003135 2.2e-34 150.6 263 39.2
Thecc.06G193100 Theobroma cacao HOM05D002808 ORTHO05D003135 8.2e-34 148.7 294 37.1
Migut.M01173 Erythranthe guttata HOM05D002808 ORTHO05D003135 1.4e-33 147.9 243 41.6
PSO675G4664 Papaver somniferum HOM05D002808 ORTHO05D003135 1.4e-33 147.9 267 38.2
PSO541G4209 Papaver somniferum HOM05D002808 ORTHO05D003135 1.6e-32 144.4 267 37.1
DCAR_028116 Daucus carota HOM05D002808 ORTHO05D003135 4.5e-32 142.9 238 38.7
Sabra11G0032700 Salix brachista HOM05D002808 ORTHO05D003135 5.9e-32 142.5 234 36.3
Nitab4.5_0001820g0140 Nicotiana tabacum HOM05D002808 ORTHO05D003135 2.2e-31 140.6 128 71.1
Potri.011G047100 Populus trichocarpa HOM05D002808 ORTHO05D003135 2.2e-31 140.6 237 37.6
Manes.17G042200 Manihot esculenta HOM05D002808 ORTHO05D003135 2.9e-31 140.2 246 35.8
BcaC04g22302 Brassica carinata HOM05D002808 ORTHO05D003135 1.1e-30 138.3 251 36.7
C09p20960 Brassica napus HOM05D002808 ORTHO05D003135 1.1e-30 138.3 251 36.7
Duzib192G0379 Durio zibethinus HOM05D002808 ORTHO05D003135 1.5e-30 137.9 257 37.4
Phvul.002G225500 Phaseolus vulgaris HOM05D002808 ORTHO05D003135 1.5e-30 137.9 264 36.7
BolC9t54993H Brassica oleracea HOM05D002808 ORTHO05D003135 1.9e-30 137.5 265 35.5
Nn1g06645 Nelumbo nucifera HOM05D002808 ORTHO05D003135 3.2e-30 136.7 251 37.5
BraA09t37329Z Brassica rapa HOM05D002808 ORTHO05D003135 7.2e-30 135.6 235 37.9
Cc03_g09780 Coffea canephora HOM05D002808 ORTHO05D003135 9.4e-30 135.2 170 48.2
Dinv40529 Davidia involucrata HOM05D002808 ORTHO05D003135 9.4e-30 135.2 189 42.9
BcaB07g31258 Brassica carinata HOM05D002808 ORTHO05D003135 1.2e-29 134.8 237 38.8
BcaB04g20313 Brassica carinata HOM05D002808 ORTHO05D003135 1.6e-29 134.4 233 36.9
Lalb_Chr09g0327531 Lupinus albus HOM05D002808 ORTHO05D003135 3.6e-29 133.3 275 34.5
A01p29880 Brassica napus HOM05D002808 ORTHO05D003135 4.7e-29 132.9 259 35.1
Sp2g03440 Schrenkiella parvula HOM05D002808 ORTHO05D003135 6.1e-29 132.5 259 35.5
C01p37760 Brassica napus HOM05D002808 ORTHO05D003135 8.0e-29 132.1 257 34.6
TWI38G0056 Tripterygium wilfordii HOM05D002808 ORTHO05D003135 8.0e-29 132.1 270 34.4
Thhalv10023269m.g Eutrema salsugineum HOM05D002808 ORTHO05D003135 1.4e-28 131.3 243 36.6
CiPaw.09G054500 Carya illinoinensis HOM05D002808 ORTHO05D003135 1.8e-28 131.0 248 38.3
COL.COLO4_22781 Corchorus olitorius HOM05D002808 ORTHO05D003135 4.0e-28 129.8 227 36.6
Lalb_Chr05g0218311 Lupinus albus HOM05D002808 ORTHO05D003135 4.0e-28 129.8 271 35.1
Potri.004G038400 Populus trichocarpa HOM05D002808 ORTHO05D003135 4.0e-28 129.8 237 36.3
GSVIVG01007118001 Vitis vinifera HOM05D002808 ORTHO05D003135 4.0e-28 129.8 250 36.0
Ciclev10017687m.g Citrus clementina HOM05D002808 ORTHO05D003135 6.7e-28 129.0 224 40.2
Gorai.011G025400 Gossypium raimondii HOM05D002808 ORTHO05D003135 8.8e-28 128.6 242 38.4
Sabra04G0023500 Salix brachista HOM05D002808 ORTHO05D003135 2.0e-27 127.5 250 34.8
CARHR052240 Cardamine hirsuta HOM05D002808 ORTHO05D003135 2.6e-27 127.1 270 34.1
Glyma.07G193100 Glycine max HOM05D002808 ORTHO05D003135 2.6e-27 127.1 258 34.1
AT1G61080 Arabidopsis thaliana HOM05D002808 ORTHO05D003135 3.3e-27 126.7 270 34.8
Ca_18516_v3 Cicer arietinum L. HOM05D002808 ORTHO05D003135 4.4e-27 126.3 260 32.7
BraA01t03116Z Brassica rapa HOM05D002808 ORTHO05D003135 5.7e-27 125.9 266 34.2
BolC1t03738H Brassica oleracea HOM05D002808 ORTHO05D003135 9.7e-27 125.2 264 33.7
A09p16920 Brassica napus HOM05D002808 ORTHO05D003135 1.3e-26 124.8 263 33.5
QL05p038939 Quercus lobata HOM05D002808 ORTHO05D003135 1.7e-26 124.4 274 33.6
THA.LOC104809567 Tarenaya hassleriana HOM05D002808 ORTHO05D003135 2.2e-26 124.0 247 35.2
Atru.chr10.1958 Acer truncatum HOM05D002808 ORTHO05D003135 2.8e-26 123.6 256 37.5
Glyma.13G183300 Glycine max HOM05D002808 ORTHO05D003135 3.7e-26 123.2 260 34.2
Medtr4g089110 Medicago truncatula HOM05D002808 ORTHO05D003135 3.7e-26 123.2 242 33.9
arahy.Tifrunner.gnm1.ann1.V35IN5 Arachis hypogaea HOM05D002808 ORTHO05D003135 1.1e-25 121.7 265 35.1
Dinv12909 Davidia involucrata HOM05D000973 ORTHO05D000652 1.4e-25 121.3 238 34.9
Carub.0002s0411 Capsella rubella HOM05D002808 ORTHO05D003135 1.8e-25 120.9 255 34.1
AL2G15350 Arabidopsis lyrata HOM05D002808 ORTHO05D003135 5.3e-25 119.4 270 33.0
Cpa.g.sc530.4 Carica papaya HOM05D002808 ORTHO05D003135 5.3e-25 119.4 183 38.3
VMungo0251G2678 Vigna mungo HOM05D002808 ORTHO05D003135 5.3e-25 119.4 300 32.7
Haze_06527 Corylus avellana HOM05D002808 ORTHO05D003135 7.0e-25 119.0 240 37.1
arahy.Tifrunner.gnm1.ann1.2NE36Q Arachis hypogaea HOM05D002808 ORTHO05D003135 9.1e-25 118.6 241 36.1
BcaC09g49337 Brassica carinata HOM05D002808 ORTHO05D003135 2.0e-24 117.5 257 33.5
Lj4g0010618 Lotus japonicus HOM05D002808 ORTHO05D003135 3.5e-24 116.7 247 33.6
Aa31LG2G9520 Aethionema arabicum HOM05D002808 ORTHO05D003135 1.0e-23 115.2 255 34.9
PGR004G0378 Punica granatum HOM05D002808 ORTHO05D003135 1.0e-23 115.2 242 35.5
Ca_00303_v3 Cicer arietinum L. HOM05D002808 ORTHO05D003135 1.3e-23 114.8 305 31.8
Haze_13133 Corylus avellana HOM05D002808 ORTHO05D003135 1.3e-23 114.8 277 31.0
CiPaw.03G174400 Carya illinoinensis HOM05D002808 ORTHO05D003135 3.8e-23 113.2 256 35.9
QL08p038142 Quercus lobata HOM05D002808 ORTHO05D003135 1.1e-22 111.7 254 33.9
Nn2g14250 Nelumbo nucifera HOM05D002808 ORTHO05D003135 3.2e-22 110.2 205 37.6
TPR.G12045 Trifolium pratense HOM05D002808 ORTHO05D003135 4.2e-22 109.8 243 31.3
VMungo0540G0036 Vigna mungo HOM05D002808 ORTHO05D003135 5.5e-22 109.4 236 34.3
Phvul.006G188600 Phaseolus vulgaris HOM05D002808 ORTHO05D003135 7.2e-22 109.0 238 34.0
Lj6g0001777 Lotus japonicus HOM05D002808 ORTHO05D003135 9.4e-22 108.6 216 34.3
arahy.Tifrunner.gnm1.ann1.29L0YD Arachis hypogaea HOM05D002808 ORTHO05D003135 1.2e-21 108.2 238 33.6
Rhsim04G0067100 Rhododendron simsii HOM05D002808 ORTHO05D003135 1.2e-21 108.2 240 34.2
ClCG03G005720 Citrullus lanatus HOM05D002808 ORTHO05D003135 1.6e-21 107.8 254 32.3
arahy.Tifrunner.gnm1.ann1.KT8XA7 Arachis hypogaea HOM05D002808 ORTHO05D003135 2.1e-21 107.5 238 33.6
CANSAT64G0853 Cannabis sativa HOM05D002808 ORTHO05D003135 3.6e-21 106.7 196 36.7
Glyma.13G242700 Glycine max HOM05D002808 ORTHO05D003135 6.1e-21 105.9 218 34.4
CsaV3_1G011990 Cucumis sativus L. HOM05D002808 ORTHO05D003135 8.0e-21 105.5 237 32.9
MD05G1320400 Malus domestica HOM05D002808 ORTHO05D003135 1.0e-20 105.1 265 32.5
Gohir.A06G125900 Gossypium hirsutum HOM05D002808 ORTHO05D003135 1.4e-20 104.8 246 32.1
MD05G1320900 Malus domestica HOM05D002808 ORTHO05D003135 1.4e-20 104.8 295 31.9
THA.LOC104812819 Tarenaya hassleriana HOM05D002808 ORTHO05D003135 1.4e-20 104.8 224 33.9
BcaC04g21359 Brassica carinata HOM05D002808 ORTHO05D003135 1.8e-20 104.4 226 33.6
A09p25850 Brassica napus HOM05D002808 ORTHO05D003135 1.8e-20 104.4 226 33.6
C09p32730 Brassica napus HOM05D002808 ORTHO05D003135 1.8e-20 104.4 226 33.6
BolC9t56117H Brassica oleracea HOM05D002808 ORTHO05D003135 1.8e-20 104.4 226 33.6
BraA09t38155Z Brassica rapa HOM05D002808 ORTHO05D003135 1.8e-20 104.4 226 33.6
Gohir.D09G071400 Gossypium hirsutum HOM05D002808 ORTHO05D003135 1.8e-20 104.4 229 33.2
MELO3C002575.2 Cucumis melo HOM05D002808 ORTHO05D003135 5.2e-20 102.8 310 29.0
ECA236G2337 Erigeron canadensis HOM05D002808 ORTHO05D003135 6.8e-20 102.4 194 37.1
MD05G1320700 Malus domestica HOM05D002808 ORTHO05D003135 6.8e-20 102.4 306 31.0
AT4G04980 Arabidopsis thaliana HOM05D002808 ORTHO05D003135 8.8e-20 102.1 278 30.9
HanXRQChr04g0124011 Helianthus annuus HOM05D002808 ORTHO05D003135 8.8e-20 102.1 250 33.6
Gohir.D06G129900 Gossypium hirsutum HOM05D002808 ORTHO05D003135 1.5e-19 101.3 246 31.3
Gorai.010G151600 Gossypium raimondii HOM05D002808 ORTHO05D003135 1.5e-19 101.3 246 31.3
BcaB01g01857 Brassica carinata HOM05D002808 ORTHO05D003135 2.0e-19 100.9 240 32.9
Psat1g206480 Pisum sativum HOM05D002808 ORTHO05D003135 2.6e-19 100.5 265 32.8
Psat7g111840 Pisum sativum HOM05D002808 ORTHO05D003135 2.6e-19 100.5 262 30.5
PGR042G1039 Punica granatum HOM05D002808 ORTHO05D003135 3.4e-19 100.1 225 32.9
GSVIVG01030542001 Vitis vinifera HOM05D002808 ORTHO05D003135 3.4e-19 100.1 186 34.4
Aa31LG9G9460 Aethionema arabicum HOM05D002808 ORTHO05D003135 5.7e-19 99.4 304 28.0
Cfa014582 Carpinus fangiana HOM05D002808 ORTHO05D003135 7.5e-19 99.0 200 34.5
ATR0693G055 Amborella trichopoda HOM05D002808 ORTHO05D003135 1.3e-18 98.2 235 34.0
Thhalv10009997m.g Eutrema salsugineum HOM05D002808 ORTHO05D003135 1.3e-18 98.2 260 31.2
Lsat_1_v5_gn_7_19381 Lactuca sativa HOM05D002808 ORTHO05D003135 1.3e-18 98.2 225 33.8
TPR.G36820 Trifolium pratense HOM05D002808 ORTHO05D003135 1.3e-18 98.2 234 32.5
Medtr2g013000 Medicago truncatula HOM05D002808 ORTHO05D003135 6.3e-18 95.9 264 26.9
Sed0028146 Sechium edule HOM05D002808 ORTHO05D003135 1.1e-17 95.1 283 28.3
AL1G22050 Arabidopsis lyrata HOM05D002808 ORTHO05D003135 1.4e-17 94.7 292 27.4
Thhalv10029342m.g Eutrema salsugineum HOM05D002808 ORTHO05D003135 1.8e-17 94.4 251 30.3
Manes.13G148600 Manihot esculenta HOM05D002808 ORTHO05D003135 2.4e-17 94.0 226 30.1
CARHR011260 Cardamine hirsuta HOM05D002808 ORTHO05D003135 5.4e-17 92.8 279 28.0
CARHR252540 Cardamine hirsuta HOM05D002808 ORTHO05D003135 7.0e-17 92.4 291 29.2
Sp6g03960 Schrenkiella parvula HOM05D002808 ORTHO05D003135 4.5e-16 89.7 261 29.1
Sp1g09760 Schrenkiella parvula HOM05D002808 ORTHO05D003135 1.0e-15 88.6 255 29.4
Nitab4.5_0002066g0070 Nicotiana tabacum HOM05D002808 ORTHO05D003135 1.3e-15 88.2 62 66.1
EL10Ac8g20311 Beta vulgaris HOM05D002808 ORTHO05D003135 2.3e-15 87.4 247 29.6
AL6G48560 Arabidopsis lyrata HOM05D002808 ORTHO05D003135 5.0e-15 86.3 237 27.8
Cc05_g06820 Coffea canephora HOM05D002808 ORTHO05D003135 6.5e-15 85.9 199 34.7
Nn2g12560 Nelumbo nucifera HOM05D002808 ORTHO05D003135 6.5e-15 85.9 164 34.1
Carub.0006s3294 Capsella rubella HOM05D002808 ORTHO05D003135 1.1e-14 85.1 264 28.4
Lj8A114G40 Lonicera japonica HOM05D002808 ORTHO05D003135 1.1e-14 85.1 137 35.8
Sc17g0006360 Simmondsia chinensis HOM05D002808 ORTHO05D003135 1.9e-14 84.3 255 31.4
AT1G11070 Arabidopsis thaliana HOM05D002808 ORTHO05D003135 2.5e-14 84.0 233 27.9
Hund21253 Selenicereus undatus HOM05D002808 ORTHO05D003135 2.1e-13 80.9 225 31.6
Sed0005619 Sechium edule HOM05D002808 ORTHO05D003135 4.7e-13 79.7 131 37.4
CSS0014200 Camellia sinensis var. sinensis HOM05D002808 ORTHO05D003135 1.0e-12 78.6 209 27.3
Aa31LG1G3840 Aethionema arabicum HOM05D002808 ORTHO05D003135 1.5e-11 74.7 166 28.9
Nitab4.5_0001833g0100 Nicotiana tabacum HOM05D002808 ORTHO05D003135 1.5e-11 74.7 145 45.5
Gohir.D10G024200 Gossypium hirsutum HOM05D002808 ORTHO05D003135 2.6e-11 73.9 151 38.4
Gohir.A10G023400 Gossypium hirsutum HOM05D002808 ORTHO05D003135 3.4e-11 73.6 169 36.7
AUR62016958 Chenopodium quinoa HOM05D002808 ORTHO05D003135 5.7e-11 72.8 214 29.9
BcaC07g41790 Brassica carinata HOM05D002808 ORTHO05D003135 7.5e-11 72.4 184 33.2
C08p48350 Brassica napus HOM05D002808 ORTHO05D003135 7.5e-11 72.4 98 38.8
BolC8t52374H Brassica oleracea HOM05D002808 ORTHO05D003135 7.5e-11 72.4 98 38.8
AUR62014773 Chenopodium quinoa HOM05D002808 ORTHO05D003135 7.5e-11 72.4 214 29.9
CAN.G765.15 Capsicum annuum HOM05D024055 ORTHO05D000146 9.8e-11 72.0 38 86.8
A06p07770 Brassica napus HOM05D002808 ORTHO05D003135 1.3e-10 71.6 220 28.2
BraA06t23978Z Brassica rapa HOM05D002808 ORTHO05D003135 2.2e-10 70.9 217 28.6
HPP92_016702 Vanilla planifolia HOM05D002808 ORTHO05D003135 2.8e-10 70.5 234 31.6
CAN.G160.60 Capsicum annuum HOM05D024055 ORTHO05D115099 6.3e-10 69.3 38 81.6
BolC5t29676H Brassica oleracea HOM05D002808 ORTHO05D003135 1.1e-09 68.6 205 28.3
BraA09t41811Z Brassica rapa HOM05D002808 ORTHO05D003135 1.1e-09 68.6 134 34.3
MD10G1299500 Malus domestica HOM05D002808 ORTHO05D003135 1.1e-09 68.6 319 26.0
A09p64840 Brassica napus HOM05D002808 ORTHO05D003135 1.4e-09 68.2 134 34.3
C05p09360 Brassica napus HOM05D002808 ORTHO05D003135 7.0e-09 65.9 204 27.9
Manes.16G024200 Manihot esculenta HOM05D002808 ORTHO05D003135 7.0e-09 65.9 120 35.8
Ah.09g235810 Amaranthus hybridus HOM05D002808 ORTHO05D003135 1.3e-07 61.6 276 27.9
SEGI_22605 Sequoiadendron giganteum HOM05D002808 ORTHO05D003135 1.3e-07 61.6 84 38.1
Nitab4.5_0002066g0060 Nicotiana tabacum HOM05D002808 ORTHO05D003135 2.3e-07 60.8 76 56.6
SHI01937 Sapria himalayana HOM05D002808 ORTHO05D003135 3.8e-07 60.1 102 37.3
CAN.G683.3 Capsicum annuum HOM05D024055 ORTHO05D005042 4.3e-06 56.6 31 83.9
CAN.G148.2 Capsicum annuum HOM05D003623 ORTHO05D004335 7.3e-06 55.8 31 87.1


User provided reference genes

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