Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1703.8 Capsicum annuum HOM05D002518 ORTHO05D002630 5.1e-79 297.7 158 100.0
CAN.G486.4 Capsicum annuum HOM05D002518 ORTHO05D002630 2.1e-72 275.8 157 94.9
CAN.G2026.3 Capsicum annuum HOM05D002518 ORTHO05D002630 6.9e-68 260.8 157 90.4
CAN.G792.7 Capsicum annuum HOM05D002518 ORTHO05D002630 6.9e-68 260.8 157 89.8
CAN.G134.149 Capsicum annuum HOM05D002518 ORTHO05D002630 4.5e-67 258.1 157 89.2
CAN.G7504.1 Capsicum annuum HOM05D002518 ORTHO05D002630 5.9e-67 257.7 157 89.2
CAN.G567.118 Capsicum annuum HOM05D002496 ORTHO05D002787 1.0e-66 256.9 157 88.5
CAN.G4577.1 Capsicum annuum HOM05D002518 ORTHO05D002630 1.9e-65 252.7 157 87.9
CAN.G551.1 Capsicum annuum HOM05D002518 ORTHO05D002630 9.4e-65 250.4 157 87.9
CAN.G567.117 Capsicum annuum HOM05D002518 ORTHO05D002630 9.4e-65 250.4 157 86.0
CAN.G10736.1 Capsicum annuum HOM05D002518 ORTHO05D002630 1.2e-64 250.0 157 87.3
CAN.G1563.4 Capsicum annuum HOM05D002518 ORTHO05D002630 2.7e-64 248.8 157 87.3
CAN.G1703.4 Capsicum annuum HOM05D002518 ORTHO05D002630 1.3e-61 240.0 157 84.1
CAN.G1751.15 Capsicum annuum HOM05D002518 ORTHO05D002630 4.8e-61 238.0 143 90.2
CAN.G5998.1 Capsicum annuum HOM05D002518 ORTHO05D002630 2.0e-59 232.6 157 83.4
CAN.G1578.25 Capsicum annuum HOM05D002518 ORTHO05D002630 3.5e-59 231.9 142 89.4
CAN.G1783.3 Capsicum annuum HOM05D002518 ORTHO05D002630 7.7e-59 230.7 143 88.8
CAN.G2802.2 Capsicum annuum HOM05D002518 ORTHO05D002630 1.0e-58 230.3 143 88.8
CAN.G1563.7 Capsicum annuum HOM05D002518 ORTHO05D002630 1.7e-58 229.6 143 87.4
CAN.G2462.1 Capsicum annuum HOM05D002518 ORTHO05D002630 1.7e-58 229.6 143 88.1
CAN.G567.120 Capsicum annuum HOM05D002518 ORTHO05D002630 1.7e-58 229.6 144 88.2
CAN.G1353.12 Capsicum annuum HOM05D002518 ORTHO05D002630 3.8e-58 228.4 143 86.7
CAN.G309.97 Capsicum annuum HOM05D002518 ORTHO05D002630 5.0e-58 228.0 142 88.7
CAN.G309.111 Capsicum annuum HOM05D002518 ORTHO05D002630 1.2e-56 223.4 157 78.3
CAN.G1563.6 Capsicum annuum HOM05D002518 ORTHO05D002630 2.1e-56 222.6 143 86.0
CAN.G792.1 Capsicum annuum HOM05D002518 ORTHO05D002630 2.7e-56 222.2 154 80.5
CAN.G1353.7 Capsicum annuum HOM05D002518 ORTHO05D002630 3.6e-56 221.9 143 88.8
CAN.G1579.3 Capsicum annuum HOM05D002518 ORTHO05D002630 1.0e-55 220.3 141 86.5
CAN.G309.105 Capsicum annuum HOM05D002518 ORTHO05D002630 2.6e-54 215.7 149 81.9
CAN.G134.141 Capsicum annuum HOM05D002518 ORTHO05D002630 1.7e-53 213.0 136 83.1
CAN.G575.109 Capsicum annuum HOM05D002518 ORTHO05D002630 1.7e-53 213.0 157 77.7
CAN.G134.144 Capsicum annuum HOM05D002518 ORTHO05D002630 2.4e-52 209.1 157 75.8
CAN.G1669.6 Capsicum annuum HOM05D002518 ORTHO05D002630 2.4e-52 209.1 138 81.9
CAN.G1563.5 Capsicum annuum HOM05D002518 ORTHO05D002630 4.1e-52 208.4 157 75.2
CAN.G282.58 Capsicum annuum HOM05D002518 ORTHO05D002630 7.7e-51 204.1 131 87.0
CAN.G1669.11 Capsicum annuum HOM05D002518 ORTHO05D002630 3.6e-48 195.3 157 72.0
CAN.G3770.1 Capsicum annuum HOM05D002518 ORTHO05D002630 3.6e-48 195.3 128 85.9
CAN.G2026.8 Capsicum annuum HOM05D002518 ORTHO05D002630 3.4e-46 188.7 157 69.4
CAN.G1579.14 Capsicum annuum HOM05D002496 ORTHO05D002787 2.4e-44 182.6 145 73.1
CAN.G1039.3 Capsicum annuum HOM05D002518 ORTHO05D002630 5.4e-44 181.4 158 67.1
CAN.G5735.1 Capsicum annuum HOM05D002518 ORTHO05D002630 1.2e-43 180.3 178 60.7
CAN.G1353.17 Capsicum annuum HOM05D002518 ORTHO05D002630 2.7e-43 179.1 139 74.8
CAN.G309.99 Capsicum annuum HOM05D002496 ORTHO05D002787 5.9e-43 177.9 147 68.7
CAN.G309.133 Capsicum annuum HOM05D002518 ORTHO05D002630 7.7e-43 177.6 154 68.2
CAN.G134.152 Capsicum annuum HOM05D002518 ORTHO05D002630 7.2e-41 171.0 119 84.0
CAN.G1353.19 Capsicum annuum HOM05D002496 ORTHO05D002787 4.7e-40 168.3 151 66.2
CAN.G1579.6 Capsicum annuum HOM05D002518 ORTHO05D002630 1.0e-39 167.2 143 69.9
CAN.G2376.2 Capsicum annuum HOM05D002496 ORTHO05D002787 2.0e-38 162.9 142 67.6
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 3.4e-38 162.2 143 67.8
CAN.G309.132 Capsicum annuum HOM05D002496 ORTHO05D002787 2.0e-35 152.9 113 73.5
CAN.G309.135 Capsicum annuum HOM05D002496 ORTHO05D002787 2.0e-35 152.9 96 83.3
CAN.G309.146 Capsicum annuum HOM05D002496 ORTHO05D002787 3.5e-35 152.1 145 64.8
CAN.G792.6 Capsicum annuum HOM05D002518 ORTHO05D002630 5.6e-33 144.8 98 82.7
CAN.G134.157 Capsicum annuum HOM05D002496 ORTHO05D002787 1.4e-31 140.2 149 59.1
CAN.G1783.4 Capsicum annuum HOM05D002496 ORTHO05D002787 2.3e-31 139.4 89 87.6
CAN.G486.2 Capsicum annuum HOM05D002518 ORTHO05D002630 8.9e-31 137.5 98 79.6
CAN.G2026.5 Capsicum annuum HOM05D002518 ORTHO05D002630 7.5e-30 134.4 98 78.6
CAN.G309.141 Capsicum annuum HOM05D002518 ORTHO05D002630 2.2e-29 132.9 114 66.7
CAN.G309.118 Capsicum annuum HOM05D002518 ORTHO05D002630 3.7e-29 132.1 90 83.3
CAN.G1353.3 Capsicum annuum HOM05D002496 ORTHO05D002787 1.8e-28 129.8 80 86.2
CAN.G1353.20 Capsicum annuum HOM05D002048 ORTHO05D002630 2.7e-27 125.9 95 76.8
CAN.G1353.22 Capsicum annuum HOM05D002496 ORTHO05D002787 4.6e-27 125.2 116 62.9
CAN.G309.108 Capsicum annuum HOM05D002518 ORTHO05D002630 5.9e-27 124.8 144 50.0
CAN.G575.110 Capsicum annuum HOM05D002518 ORTHO05D002630 3.0e-26 122.5 101 72.3
CAN.G309.142 Capsicum annuum HOM05D002518 ORTHO05D002146 2.8e-24 115.9 90 71.1
CAN.G1465.17 Capsicum annuum HOM05D002518 ORTHO05D002630 1.2e-22 110.5 81 79.0
CAN.G6001.1 Capsicum annuum HOM05D002518 ORTHO05D002630 1.3e-21 107.1 66 90.9
CAN.G1039.4 Capsicum annuum HOM05D002518 ORTHO05D002630 3.7e-21 105.5 66 89.4
CAN.G309.130 Capsicum annuum HOM05D002496 ORTHO05D002787 4.9e-21 105.1 59 88.1
CAN.G11366.1 Capsicum annuum HOM05D002518 ORTHO05D002630 1.1e-20 104.0 66 87.9
CAN.G10644.1 Capsicum annuum HOM05D002518 ORTHO05D002630 2.4e-20 102.8 66 87.9
CAN.G309.102 Capsicum annuum HOM05D002048 ORTHO05D002146 2.4e-20 102.8 76 76.3
CAN.G134.146 Capsicum annuum HOM05D002518 ORTHO05D002630 3.5e-19 99.0 101 61.4
PGSC0003DMG401023504 Solanum tuberosum HOM05D002518 ORTHO05D002630 1.9e-17 93.2 66 78.8
Nitab4.5_0003965g0010 Nicotiana tabacum HOM05D002518 ORTHO05D002630 7.3e-17 91.3 101 58.4
Solyc05g054930.3 Solanum lycopersicum HOM05D002518 ORTHO05D002630 9.5e-17 90.9 66 80.3
Sopen05g033390 Solanum pennellii HOM05D002518 ORTHO05D002630 2.1e-16 89.7 66 78.8
CAN.G1669.2 Capsicum annuum HOM05D008784 ORTHO05D002630 3.6e-16 89.0 66 78.8
CAN.G309.100 Capsicum annuum HOM05D002496 ORTHO05D002787 4.7e-16 88.6 118 51.7
Nitab4.5_0000914g0070 Nicotiana tabacum HOM05D002518 ORTHO05D002630 6.2e-16 88.2 66 74.2
CAN.G309.113 Capsicum annuum HOM05D002496 ORTHO05D002787 6.8e-15 84.7 52 84.6
CAN.G309.125 Capsicum annuum HOM05D002496 ORTHO05D002787 4.4e-14 82.0 125 49.6
Actinidia03008 Actinidia chinensis HOM05D002518 ORTHO05D002630 6.4e-13 78.2 66 62.1
Peaxi162Scf00015g00273 Petunia axillaris HOM05D002518 ORTHO05D002630 6.4e-13 78.2 66 66.7
CAN.G1833.6 Capsicum annuum HOM05D002496 ORTHO05D002787 8.3e-13 77.8 45 97.8
CAN.G2070.1 Capsicum annuum HOM05D002518 ORTHO05D002630 8.3e-13 77.8 45 97.8
CAN.G2101.2 Capsicum annuum HOM05D002518 ORTHO05D002630 8.3e-13 77.8 45 97.8
CAN.G2119.2 Capsicum annuum HOM05D002496 ORTHO05D002787 8.3e-13 77.8 45 97.8
CAN.G1669.3 Capsicum annuum HOM05D002518 ORTHO05D002630 7.1e-12 74.7 45 93.3
Dinv25940 Davidia involucrata HOM05D002518 ORTHO05D002630 7.1e-12 74.7 81 53.1
Actinidia38230 Actinidia chinensis HOM05D002518 ORTHO05D002630 1.6e-11 73.6 66 59.1
CAN.G710.69 Capsicum annuum HOM05D002518 ORTHO05D002630 2.7e-11 72.8 45 93.3
Dinv31385 Davidia involucrata HOM05D002518 ORTHO05D002630 2.7e-11 72.8 63 61.9
GSVIVG01032635001 Vitis vinifera HOM05D002518 ORTHO05D002630 2.7e-11 72.8 81 50.6
CAN.G1353.26 Capsicum annuum HOM05D002518 ORTHO05D002630 3.5e-11 72.4 45 88.9
CAN.G1751.10 Capsicum annuum HOM05D002518 ORTHO05D002630 3.5e-11 72.4 45 91.1
Cfa001564 Carpinus fangiana HOM05D002518 ORTHO05D002630 3.5e-11 72.4 81 54.3
Hma1.2p1_0207F.1_g088000 Hydrangea macrophylla HOM05D002518 ORTHO05D002630 3.5e-11 72.4 63 58.7
Rhsim03G0121000 Rhododendron simsii HOM05D002518 ORTHO05D002630 3.5e-11 72.4 66 62.1
vmacro07106 Vaccinium macrocarpon HOM05D002518 ORTHO05D002630 4.6e-11 72.0 66 60.6
Haze_16965 Corylus avellana HOM05D002518 ORTHO05D002630 6.0e-11 71.6 81 51.9
Lj1A929T68 Lonicera japonica HOM05D002518 ORTHO05D002630 7.8e-11 71.2 63 60.3
CAN.G134.139 Capsicum annuum HOM05D002496 ORTHO05D002787 1.0e-10 70.9 45 88.9
CAN.G575.132 Capsicum annuum HOM05D002496 ORTHO05D002787 1.3e-10 70.5 45 91.1
Ciclev10030639m.g Citrus clementina HOM05D002518 ORTHO05D002630 3.0e-10 69.3 62 59.7
MSTRG.8231 Avicennia marina HOM05D002518 ORTHO05D002630 8.6e-10 67.8 66 56.1
CAN.G1484.14 Capsicum annuum HOM05D002518 ORTHO05D002630 8.6e-10 67.8 98 50.0
CiPaw.01G279100 Carya illinoinensis HOM05D002518 ORTHO05D002630 8.6e-10 67.8 65 55.4
CSS0012201 Camellia sinensis var. sinensis HOM05D002518 ORTHO05D002630 3.3e-09 65.9 61 57.4
CAN.G5118.1 Capsicum annuum HOM05D002518 ORTHO05D002630 3.3e-09 65.9 57 73.7
CSS0011254 Camellia sinensis var. sinensis HOM05D002518 ORTHO05D002630 7.3e-09 64.7 61 55.7
CAN.G309.143 Capsicum annuum HOM05D002496 ORTHO05D002630 7.3e-09 64.7 122 40.2
Cc02_g08710 Coffea canephora HOM05D002518 ORTHO05D002630 7.3e-09 64.7 65 53.8
VMungo0720G1865 Vigna mungo HOM05D002518 ORTHO05D002630 1.2e-08 63.9 77 51.9
Glyma.10G292800 Glycine max HOM05D002518 ORTHO05D002630 1.6e-08 63.5 77 50.6
MD07G1183400 Malus domestica HOM05D002518 ORTHO05D002630 1.6e-08 63.5 81 46.9
Glyma.20G243000 Glycine max HOM05D002518 ORTHO05D002630 3.6e-08 62.4 77 50.6
Lalb_Chr02g0143821 Lupinus albus HOM05D002518 ORTHO05D002630 3.6e-08 62.4 77 49.4
Eucgr.G02780 Eucalyptus grandis HOM05D002518 ORTHO05D002630 4.7e-08 62.0 62 50.0
Atru.chr12.601 Acer truncatum HOM05D002518 ORTHO05D002630 6.2e-08 61.6 62 56.5
DCAR_031727 Daucus carota HOM05D002518 ORTHO05D002630 6.2e-08 61.6 63 52.4
Oeu050634.1 Olea europaea HOM05D002518 ORTHO05D002630 8.1e-08 61.2 66 50.0
CAN.G1703.18 Capsicum annuum HOM05D002496 ORTHO05D002787 1.1e-07 60.8 84 52.4
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 1.1e-07 60.8 65 49.2
arahy.Tifrunner.gnm1.ann1.7RD402 Arachis hypogaea HOM05D002518 ORTHO05D002630 1.4e-07 60.5 62 51.6
TPR.G10394 Trifolium pratense HOM05D002518 ORTHO05D002630 1.4e-07 60.5 62 51.6
ATR0307G086 Amborella trichopoda HOM05D002518 ORTHO05D002630 1.8e-07 60.1 65 49.2
Duzib114G0996 Durio zibethinus HOM05D002518 ORTHO05D002630 1.8e-07 60.1 73 45.2
Ca_11341_v3 Cicer arietinum L. HOM05D002518 ORTHO05D002630 2.3e-07 59.7 62 53.2
Ca_30327_v3 Cicer arietinum L. HOM05D002518 ORTHO05D002630 2.3e-07 59.7 62 53.2
Medtr1g116070 Medicago truncatula HOM05D002518 ORTHO05D002630 2.3e-07 59.7 81 45.7
Oeu058329.1 Olea europaea HOM05D002518 ORTHO05D002630 2.3e-07 59.7 66 47.0
Manes.07G106100 Manihot esculenta HOM05D002518 ORTHO05D002630 3.1e-07 59.3 62 50.0
Psat6g239640 Pisum sativum HOM05D002518 ORTHO05D002630 3.1e-07 59.3 59 54.2
QL08p057433 Quercus lobata HOM05D002518 ORTHO05D002630 3.1e-07 59.3 62 51.6
Thecc.10G063600 Theobroma cacao HOM05D002518 ORTHO05D002630 3.1e-07 59.3 75 46.7
CsaV3_5G026090 Cucumis sativus L. HOM05D002518 ORTHO05D002630 4.0e-07 58.9 59 55.9
Phvul.007G007200 Phaseolus vulgaris HOM05D002518 ORTHO05D002630 4.0e-07 58.9 77 48.1
arahy.Tifrunner.gnm1.ann1.YI1C88 Arachis hypogaea HOM05D002518 ORTHO05D002630 5.2e-07 58.5 62 51.6
ClCG09G020340 Citrullus lanatus HOM05D002518 ORTHO05D002630 5.2e-07 58.5 59 52.5
Gohir.A10G208600 Gossypium hirsutum HOM05D002518 ORTHO05D002630 5.2e-07 58.5 74 41.9
Gohir.D10G216901 Gossypium hirsutum HOM05D002518 ORTHO05D002630 6.8e-07 58.2 74 41.9
DCAR_015261 Daucus carota HOM05D002518 ORTHO05D002630 8.9e-07 57.8 64 50.0
Migut.F01537 Erythranthe guttata HOM05D002518 ORTHO05D002630 8.9e-07 57.8 66 51.5
Duzib128G0274 Durio zibethinus HOM05D002518 ORTHO05D002630 1.2e-06 57.4 81 40.7
TAR633G0496 Trochodendron aralioides HOM05D002518 ORTHO05D002630 1.2e-06 57.4 81 44.4
Gorai.011G242500 Gossypium raimondii HOM05D002518 ORTHO05D002630 1.5e-06 57.0 74 40.5
Nn2g14619 Nelumbo nucifera HOM05D002518 ORTHO05D002630 1.5e-06 57.0 63 50.8
MELO3C025489.2 Cucumis melo HOM05D002518 ORTHO05D002630 2.0e-06 56.6 59 52.5
Lalb_Chr06g0164081 Lupinus albus HOM05D002518 ORTHO05D002630 2.0e-06 56.6 77 45.5
PSO063G5989 Papaver somniferum HOM05D002518 ORTHO05D002630 2.0e-06 56.6 66 50.0
Manes.10G039900 Manihot esculenta HOM05D002518 ORTHO05D002630 2.6e-06 56.2 62 46.8
PSO421G0235 Papaver somniferum HOM05D002518 ORTHO05D002630 2.6e-06 56.2 66 50.0
SHI28186 Sapria himalayana HOM05D002518 ORTHO05D002630 2.6e-06 56.2 62 45.2
TAR633G1707 Trochodendron aralioides HOM05D002518 ORTHO05D002630 2.6e-06 56.2 81 43.2
Potri.008G047200 Populus trichocarpa HOM05D002518 ORTHO05D002630 3.4e-06 55.8 81 40.7
PGR142G2021 Punica granatum HOM05D002518 ORTHO05D002630 3.4e-06 55.8 77 41.6
Sed0009032 Sechium edule HOM05D002518 ORTHO05D002630 3.4e-06 55.8 59 52.5
COL.COLO4_06777 Corchorus olitorius HOM05D002518 ORTHO05D002630 4.4e-06 55.5 66 45.5
THA.LOC104825243 Tarenaya hassleriana HOM05D002518 ORTHO05D002630 4.4e-06 55.5 71 45.1
Lj5g0003286 Lotus japonicus HOM05D002518 ORTHO05D002630 5.8e-06 55.1 62 48.4
Sabra08G0033400 Salix brachista HOM05D002518 ORTHO05D002630 5.8e-06 55.1 61 47.5
Aqoxy7G03758 Aquilegia oxysepala HOM05D002518 ORTHO05D002630 7.6e-06 54.7 63 47.6
SalBow6G2073 Salvia bowleyana HOM05D002518 ORTHO05D002630 9.9e-06 54.3 66 42.4
unitig_749.g14015 Utricularia gibba HOM05D002518 ORTHO05D002630 9.9e-06 54.3 64 43.8


User provided reference genes

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