Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 6.7e-207 723.8 368 100.0
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 2.2e-189 665.6 368 91.3
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 5.0e-186 654.4 369 90.2
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 3.0e-183 645.2 368 88.9
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 1.5e-169 599.7 345 89.0
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 4.4e-158 561.6 321 90.0
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.5e-137 493.4 371 73.6
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 9.9e-134 480.7 370 65.7
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 2.4e-132 476.1 368 65.2
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 6.0e-131 471.5 368 64.7
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 3.0e-130 469.2 369 63.1
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 2.5e-129 466.1 370 62.2
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 1.3e-128 463.8 371 62.0
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 8.2e-128 461.1 370 60.5
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 2.4e-127 459.5 370 63.0
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 3.1e-127 459.1 370 63.5
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 2.6e-126 456.1 370 62.4
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 4.5e-126 455.3 376 60.9
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 5.8e-126 454.9 376 60.4
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 7.6e-126 454.5 376 62.2
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 1.7e-125 453.4 372 61.3
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.9e-125 452.6 370 63.5
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 4.9e-125 451.8 372 61.3
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 6.5e-125 451.4 370 62.4
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 6.5e-125 451.4 372 61.3
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 8.4e-125 451.1 370 59.7
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 2.5e-124 449.5 369 61.8
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 2.5e-124 449.5 372 60.8
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 4.2e-124 448.7 370 58.9
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 5.5e-124 448.4 372 60.8
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 5.5e-124 448.4 370 61.6
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 1.2e-123 447.2 373 60.3
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 1.6e-123 446.8 369 61.0
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 1.6e-123 446.8 370 60.5
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 4.6e-123 445.3 372 60.8
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 4.6e-123 445.3 369 60.4
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 1.8e-122 443.4 346 66.8
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 1.8e-122 443.4 368 61.4
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 6.7e-122 441.4 368 61.1
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 1.1e-121 440.7 359 61.8
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 1.5e-121 440.3 369 60.4
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.2e-120 436.4 372 59.1
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 2.2e-120 436.4 414 56.0
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 3.7e-120 435.6 369 58.8
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 3.7e-120 435.6 394 60.4
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 6.3e-120 434.9 370 58.9
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 8.2e-120 434.5 369 58.0
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 1.8e-119 433.3 379 58.0
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 5.3e-119 431.8 373 57.9
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 6.9e-119 431.4 372 58.6
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 6.9e-119 431.4 369 58.0
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 1.2e-118 430.6 371 59.8
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 1.2e-118 430.6 376 57.2
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 4.5e-118 428.7 370 58.4
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 1.0e-117 427.6 373 57.6
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 1.7e-117 426.8 376 59.3
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 1.9e-116 423.3 369 58.5
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 2.5e-116 422.9 376 56.6
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 7.2e-116 421.4 374 57.8
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 2.3e-114 416.4 370 57.3
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 2.3e-114 416.4 368 56.2
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 3.9e-114 415.6 369 57.5
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 3.9e-114 415.6 369 57.5
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 3.9e-114 415.6 370 55.4
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 8.8e-114 414.5 369 59.3
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 8.8e-114 414.5 371 60.4
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 1.1e-113 414.1 371 56.9
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 4.3e-113 412.1 372 57.8
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 4.8e-112 408.7 378 58.2
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 4.8e-112 408.7 378 58.2
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 4.8e-112 408.7 345 60.0
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 8.2e-112 407.9 380 57.9
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 8.2e-112 407.9 382 57.1
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 1.1e-111 407.5 374 58.3
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 1.4e-111 407.1 380 57.9
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 9.1e-111 404.4 375 58.4
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 1.2e-110 404.1 372 55.4
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 1.2e-110 404.1 398 55.5
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 1.5e-110 403.7 381 57.5
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 2.6e-110 402.9 369 55.8
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 2.6e-110 402.9 373 56.6
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 4.5e-110 402.1 368 55.2
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 5.9e-110 401.7 374 57.8
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 7.7e-110 401.4 375 58.1
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 1.0e-109 401.0 380 58.4
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 2.2e-109 399.8 382 55.2
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 5.0e-109 398.7 368 55.2
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 6.5e-109 398.3 384 56.8
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 6.5e-109 398.3 357 58.5
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 4.2e-108 395.6 383 56.4
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 9.4e-108 394.4 345 60.0
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 3.6e-107 392.5 364 55.5
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 4.7e-107 392.1 373 56.3
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 3.0e-106 389.4 380 53.9
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 3.0e-106 389.4 355 56.9
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 1.5e-105 387.1 362 54.4
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 7.4e-105 384.8 380 56.6
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 1.3e-104 384.0 340 58.5
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 1.3e-104 384.0 350 57.4
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 1.3e-104 384.0 386 52.3
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 1.1e-103 380.9 322 60.9
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 9.1e-103 377.9 351 55.6
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 2.6e-102 376.3 376 52.4
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 7.7e-102 374.8 373 52.3
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 1.7e-101 373.6 372 52.2
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 3.8e-101 372.5 331 57.4
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 5.0e-101 372.1 357 57.1
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 3.2e-100 369.4 352 56.8
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 9.4e-100 367.9 370 52.2
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 1.2e-99 367.5 353 55.5
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 2.2e-96 356.7 326 56.7
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 3.1e-95 352.8 305 58.7
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 5.0e-93 345.5 335 56.4
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 5.5e-92 342.0 337 53.7
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 7.2e-92 341.7 376 49.5
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 6.1e-91 338.6 382 47.6
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 1.4e-90 337.4 368 50.5
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 6.7e-90 335.1 384 49.5
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 2.0e-89 333.6 312 55.1
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 7.7e-86 321.6 373 46.4
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 1.9e-76 290.4 262 60.7
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 1.0e-74 284.6 298 53.4
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 3.0e-74 283.1 381 41.2
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 7.5e-73 278.5 241 58.5
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 2.8e-72 276.6 339 44.5
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 2.4e-71 273.5 298 52.7
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 7.3e-68 261.9 274 53.3
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 2.1e-67 260.4 479 36.1
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 8.0e-67 258.5 232 58.6
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 1.0e-66 258.1 413 38.5
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 1.2e-65 254.6 288 50.7
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 3.4e-65 253.1 383 37.3
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 2.5e-60 236.9 259 50.6
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 2.3e-58 230.3 393 35.6
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.5e-57 227.6 241 51.5
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 1.1e-55 221.5 217 52.1
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 1.8e-50 204.1 335 38.2
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 3.1e-50 203.4 204 52.0
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 4.4e-49 199.5 382 33.8
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 1.9e-47 194.1 219 48.4
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.2e-46 191.4 253 43.9
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 5.8e-41 172.6 151 56.3
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 2.5e-36 157.1 138 55.8
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 4.7e-35 152.9 115 61.7
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 2.6e-25 120.6 74 74.3
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 5.1e-21 106.3 424 23.1
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 1.9e-20 104.4 162 34.6
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 4.8e-19 99.8 139 46.0
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 7.1e-15 85.9 120 43.3
RcHm_v2.0_Chr1g0351871 Rosa chinensis HOM05D004815 ORTHO05D005742 1.4e-10 71.6 50 70.0
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 9.0e-10 68.9 73 52.1
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 2.0e-09 67.8 42 73.8
C07p07230 Brassica napus HOM05D004815 ORTHO05D005742 1.4e-07 61.6 59 50.8
Hund16967 Selenicereus undatus HOM05D004815 ORTHO05D005742 9.3e-07 58.9 77 41.6
MBI11_g13051_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 1.6e-06 58.2 77 45.5


User provided reference genes

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