Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 4.6e-64 247.7 120 100.0
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 4.3e-62 241.1 120 95.8
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.3e-61 239.6 120 94.2
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 2.4e-60 235.3 119 92.4
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.0e-58 229.9 120 90.0
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 1.6e-53 212.6 111 86.5
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 1.1e-52 209.9 115 81.7
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 3.1e-52 208.4 115 84.3
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 4.1e-52 208.0 115 81.7
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 9.0e-52 206.8 115 79.1
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 9.0e-52 206.8 115 81.7
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 1.2e-51 206.5 115 79.1
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.2e-51 206.5 115 79.1
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 1.2e-51 206.5 117 79.5
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 2.0e-51 205.7 115 78.3
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 2.6e-51 205.3 110 82.7
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.6e-51 205.3 115 80.9
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 2.6e-51 205.3 115 80.9
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 2.6e-51 205.3 115 80.9
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 3.4e-51 204.9 114 81.6
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 4.5e-51 204.5 115 78.3
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 7.7e-51 203.8 115 78.3
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 1.0e-50 203.4 114 79.8
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.3e-50 203.0 115 80.0
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 2.2e-50 202.2 112 82.1
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 2.9e-50 201.8 115 79.1
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 2.9e-50 201.8 104 90.4
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 3.8e-50 201.4 115 79.1
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 3.8e-50 201.4 114 79.8
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 3.8e-50 201.4 112 80.4
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 5.0e-50 201.1 110 84.5
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 5.0e-50 201.1 114 78.9
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 5.0e-50 201.1 115 79.1
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 5.0e-50 201.1 111 80.2
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 6.5e-50 200.7 111 82.9
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 6.5e-50 200.7 115 78.3
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 6.5e-50 200.7 115 78.3
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 1.4e-49 199.5 115 79.1
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 1.9e-49 199.1 115 79.1
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 1.9e-49 199.1 115 79.1
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 2.5e-49 198.7 112 80.4
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 2.5e-49 198.7 115 75.7
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 3.2e-49 198.4 111 82.0
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 3.2e-49 198.4 115 77.4
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 3.2e-49 198.4 115 78.3
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 3.2e-49 198.4 111 81.1
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 4.2e-49 198.0 115 77.4
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 4.2e-49 198.0 114 78.1
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 5.5e-49 197.6 115 79.1
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 5.5e-49 197.6 110 80.0
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 7.2e-49 197.2 111 80.2
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 7.2e-49 197.2 111 78.4
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 9.4e-49 196.8 112 78.6
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 9.4e-49 196.8 111 81.1
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 9.4e-49 196.8 110 82.7
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 9.4e-49 196.8 115 79.1
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.2e-48 196.4 112 80.4
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 1.2e-48 196.4 110 79.1
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 2.1e-48 195.7 115 76.5
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 2.7e-48 195.3 112 76.8
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 2.7e-48 195.3 115 76.5
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 3.6e-48 194.9 112 79.5
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 6.1e-48 194.1 115 75.7
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 6.1e-48 194.1 115 75.7
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 6.1e-48 194.1 115 75.7
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 6.1e-48 194.1 115 75.7
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 6.1e-48 194.1 114 78.1
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 1.4e-47 193.0 115 75.7
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 1.8e-47 192.6 115 74.8
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 1.8e-47 192.6 115 74.8
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 1.8e-47 192.6 115 74.8
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 2.3e-47 192.2 115 74.8
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 2.3e-47 192.2 115 74.8
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 2.3e-47 192.2 115 74.8
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 2.3e-47 192.2 115 74.8
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 2.3e-47 192.2 115 74.8
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 2.3e-47 192.2 115 74.8
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 2.3e-47 192.2 115 74.8
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 2.3e-47 192.2 115 75.7
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 3.0e-47 191.8 104 86.5
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 3.0e-47 191.8 119 80.7
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 3.9e-47 191.4 110 79.1
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 3.9e-47 191.4 115 74.8
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 3.9e-47 191.4 112 76.8
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 5.1e-47 191.0 108 81.5
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 5.1e-47 191.0 112 76.8
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 5.1e-47 191.0 111 77.5
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 6.7e-47 190.7 112 75.0
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 6.7e-47 190.7 115 75.7
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 8.8e-47 190.3 116 75.9
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 2.5e-46 188.7 112 75.0
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 2.5e-46 188.7 110 77.3
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 3.3e-46 188.3 114 74.6
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 4.3e-46 188.0 115 72.2
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 5.7e-46 187.6 113 74.3
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 7.4e-46 187.2 115 75.7
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 1.3e-45 186.4 114 73.7
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 1.7e-45 186.0 115 73.0
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.7e-45 186.0 117 73.5
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 8.2e-45 183.7 110 76.4
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 1.1e-44 183.3 108 78.7
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 1.1e-44 183.3 110 75.5
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 1.4e-44 183.0 108 77.8
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 1.4e-44 183.0 111 75.7
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 1.2e-43 179.9 112 72.3
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 1.2e-43 179.9 136 64.7
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 3.4e-43 178.3 131 65.6
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 2.2e-42 175.6 104 74.0
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 2.2e-42 175.6 104 74.0
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 2.9e-42 175.3 105 74.3
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 3.8e-42 174.9 114 65.8
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 3.8e-42 174.9 102 78.4
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 5.0e-42 174.5 150 57.3
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 1.9e-41 172.6 104 74.0
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 2.5e-41 172.2 103 73.8
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 5.5e-41 171.0 105 73.3
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 2.7e-40 168.7 101 73.3
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 2.7e-40 168.7 95 82.1
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 6.1e-40 167.5 85 94.1
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 7.9e-40 167.2 179 50.8
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 9.7e-38 160.2 101 69.3
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 9.1e-36 153.7 91 78.0
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 4.2e-33 144.8 112 59.8
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 7.2e-33 144.1 112 58.9
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 1.6e-32 142.9 113 63.7
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 2.7e-32 142.1 112 55.4
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 1.5e-30 136.3 62 98.4
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 3.7e-29 131.7 115 55.7
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 4.1e-28 128.3 108 52.8
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-27 126.3 112 51.8
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 1.6e-24 116.3 57 84.2
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 2.1e-24 115.9 63 79.4
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 6.7e-23 110.9 85 62.4
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 8.8e-23 110.5 57 80.7
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 2.0e-22 109.4 103 50.5
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 1.3e-21 106.7 99 51.5
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 2.8e-21 105.5 57 82.5
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 3.1e-20 102.1 113 48.7
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 2.0e-19 99.4 153 40.5
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 7.7e-19 97.4 58 84.5
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 6.5e-18 94.4 96 47.9
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 1.1e-17 93.6 83 55.4
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 1.5e-17 93.2 55 80.0
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 1.4e-15 86.7 58 72.4
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 2.2e-13 79.3 55 63.6
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 4.5e-11 71.6 46 65.2
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 8.6e-10 67.4 85 37.6
VMungo0540G1094 Vigna mungo HOM05D003030 ORTHO05D006417 1.8e-07 59.7 82 46.3


User provided reference genes

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