Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1693.8 Capsicum annuum HOM05D004972 ORTHO05D006309 2.9e-128 461.8 224 100.0
PGSC0003DMG400030511 Solanum tuberosum HOM05D004972 ORTHO05D006309 1.0e-120 436.8 225 94.2
Sopen05g004230 Solanum pennellii HOM05D004972 ORTHO05D006309 1.7e-120 436.0 225 94.2
Nitab4.5_0004692g0050 Nicotiana tabacum HOM05D004972 ORTHO05D006309 2.9e-120 435.3 223 94.6
Solyc05g008400.4 Solanum lycopersicum HOM05D004972 ORTHO05D006309 2.9e-120 435.3 225 93.8
Peaxi162Scf00205g00614 Petunia axillaris HOM05D004972 ORTHO05D006309 1.0e-117 426.8 225 92.0
Migut.L00755 Erythranthe guttata HOM05D004972 ORTHO05D006309 4.4e-108 394.8 225 84.0
Nitab4.5_0004092g0040 Nicotiana tabacum HOM05D004972 ORTHO05D006309 4.8e-107 391.3 266 75.9
Cc11_g09090 Coffea canephora HOM05D004972 ORTHO05D006309 4.1e-106 388.3 225 85.3
Oeu044327.1 Olea europaea HOM05D004972 ORTHO05D006309 2.0e-105 386.0 225 84.0
MSTRG.882 Avicennia marina HOM05D004972 ORTHO05D006309 3.5e-105 385.2 225 82.2
Actinidia15243 Actinidia chinensis HOM05D004972 ORTHO05D006309 5.9e-105 384.4 225 82.2
Actinidia36689 Actinidia chinensis HOM05D004972 ORTHO05D006309 5.9e-105 384.4 225 82.2
CSS0013445 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 5.9e-105 384.4 226 83.2
CSS0024462 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 5.9e-105 384.4 226 83.2
SGA_v2.0_scaffold50G18531 Striga asiatica HOM05D004972 ORTHO05D006309 1.3e-104 383.3 225 81.8
Actinidia14945 Actinidia chinensis HOM05D004972 ORTHO05D006309 3.8e-104 381.7 225 81.8
Rhsim09G0068400 Rhododendron simsii HOM05D004972 ORTHO05D006309 3.8e-104 381.7 225 80.4
Manes.06G062200 Manihot esculenta HOM05D004972 ORTHO05D006309 5.0e-104 381.3 225 81.3
SalBow8G2598 Salvia bowleyana HOM05D004972 ORTHO05D006309 1.5e-103 379.8 226 81.9
Dinv16188 Davidia involucrata HOM05D004972 ORTHO05D006309 1.9e-103 379.4 225 82.7
Lj6C749G10 Lonicera japonica HOM05D004972 ORTHO05D006309 4.2e-103 378.3 223 82.1
GSVIVG01011786001 Vitis vinifera HOM05D004972 ORTHO05D006309 7.2e-103 377.5 225 80.9
MD13G1028600 Malus domestica HOM05D004972 ORTHO05D006309 1.2e-102 376.7 225 78.7
Ciclev10016597m.g Citrus clementina HOM05D004972 ORTHO05D006309 1.6e-102 376.3 225 79.1
Potri.010G115800 Populus trichocarpa HOM05D004972 ORTHO05D006309 2.7e-102 375.6 225 79.6
COL.COLO4_10156 Corchorus olitorius HOM05D004972 ORTHO05D006309 4.7e-102 374.8 225 80.0
DCAR_030202 Daucus carota HOM05D004972 ORTHO05D006309 1.0e-101 373.6 226 78.8
Prupe.1G321700 Prunus persica HOM05D004972 ORTHO05D006309 1.0e-101 373.6 224 78.6
Dinv05881 Davidia involucrata HOM05D004972 ORTHO05D006309 1.8e-101 372.9 224 79.9
FAN07G2072 Fragaria x ananassa HOM05D004972 ORTHO05D006309 5.2e-101 371.3 225 77.8
RcHm_v2.0_Chr4g0433731 Rosa chinensis HOM05D004972 ORTHO05D006309 5.2e-101 371.3 225 77.3
MD16G1031300 Malus domestica HOM05D004972 ORTHO05D006309 6.8e-101 370.9 225 77.3
Thecc.04G114900 Theobroma cacao HOM05D004972 ORTHO05D006309 9.8e-100 367.1 225 78.2
Hma1.2p1_0114F.1_g055290 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 2.2e-99 365.9 225 79.1
CiPaw.05G247000 Carya illinoinensis HOM05D004972 ORTHO05D006309 2.8e-99 365.5 225 77.3
FAN12G1431 Fragaria x ananassa HOM05D004972 ORTHO05D006309 3.7e-99 365.2 225 77.3
FAN12G3562 Fragaria x ananassa HOM05D004972 ORTHO05D006309 3.7e-99 365.2 225 77.3
CsaV3_5G034860 Cucumis sativus L. HOM05D004972 ORTHO05D006309 4.8e-99 364.8 225 76.9
Atru.chr11.981 Acer truncatum HOM05D004972 ORTHO05D006309 6.3e-99 364.4 225 77.8
FAN17G1326 Fragaria x ananassa HOM05D004972 ORTHO05D006309 8.3e-99 364.0 225 76.4
CANSAT01G2336 Cannabis sativa HOM05D004972 ORTHO05D006309 1.1e-98 363.6 225 76.4
FvH4_4g26160 Fragaria vesca HOM05D004972 ORTHO05D006309 1.1e-98 363.6 225 77.3
Gohir.D12G057200 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.1e-98 363.6 225 77.8
Cfa008573 Carpinus fangiana HOM05D004972 ORTHO05D006309 1.4e-98 363.2 225 78.2
FAN22G0152 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.8e-98 362.8 225 76.0
Sc04g0005680 Simmondsia chinensis HOM05D004972 ORTHO05D006309 9.1e-98 360.5 226 77.0
Eucgr.G02212 Eucalyptus grandis HOM05D004972 ORTHO05D006309 2.7e-97 359.0 225 76.9
Gohir.A12G057400 Gossypium hirsutum HOM05D004972 ORTHO05D006309 4.5e-97 358.2 225 76.9
TWI79G0317 Tripterygium wilfordii HOM05D004972 ORTHO05D006309 5.9e-97 357.8 224 76.8
TAR629G1532 Trochodendron aralioides HOM05D004972 ORTHO05D006309 1.0e-96 357.1 225 77.8
Sed0026570 Sechium edule HOM05D004972 ORTHO05D006309 1.3e-96 356.7 225 75.6
THA.LOC104825471 Tarenaya hassleriana HOM05D004972 ORTHO05D006309 1.3e-96 356.7 225 76.0
Gohir.A07G173000 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.7e-96 356.3 225 77.3
Gorai.001G201700 Gossypium raimondii HOM05D004972 ORTHO05D006309 2.9e-96 355.5 225 77.3
AUR62014195 Chenopodium quinoa HOM05D004972 ORTHO05D006309 3.8e-96 355.1 225 76.4
Gohir.D07G180500 Gossypium hirsutum HOM05D004972 ORTHO05D006309 6.5e-96 354.4 225 76.9
CiPaw.06G013900 Carya illinoinensis HOM05D004972 ORTHO05D006309 8.5e-96 354.0 223 75.8
SGA_v2.0_scaffold38G15047 Striga asiatica HOM05D004972 ORTHO05D006309 3.2e-95 352.1 225 74.7
QL01p002347 Quercus lobata HOM05D004972 ORTHO05D006309 1.2e-94 350.1 279 63.8
Lsat_1_v5_gn_8_42761 Lactuca sativa HOM05D004972 ORTHO05D006309 2.3e-93 345.9 225 72.9
Cpa.g.sc65.108 Carica papaya HOM05D004972 ORTHO05D006309 8.8e-93 344.0 197 81.2
HanXRQChr08g0212881 Helianthus annuus HOM05D004972 ORTHO05D006309 1.2e-92 343.6 225 72.4
Hund24992 Selenicereus undatus HOM05D004972 ORTHO05D006309 1.2e-92 343.6 260 67.3
EL10Ac6g14241 Beta vulgaris HOM05D004972 ORTHO05D006309 1.5e-92 343.2 225 73.3
HanXRQChr07g0189871 Helianthus annuus HOM05D004972 ORTHO05D006309 2.0e-92 342.8 225 72.0
AT5G13240 Arabidopsis thaliana HOM05D004972 ORTHO05D006309 2.6e-92 342.4 225 73.8
Duzib133G0650 Durio zibethinus HOM05D004972 ORTHO05D006309 3.4e-92 342.0 197 82.2
ECA233G6099 Erigeron canadensis HOM05D004972 ORTHO05D006309 1.7e-91 339.7 224 72.3
Carub.0006s1141 Capsella rubella HOM05D004972 ORTHO05D006309 2.2e-91 339.3 225 72.9
vmacro01431 Vaccinium macrocarpon HOM05D004972 ORTHO05D006309 2.8e-91 339.0 208 78.4
AL6G23850 Arabidopsis lyrata HOM05D004972 ORTHO05D006309 1.1e-90 337.0 225 72.9
Thhalv10014602m.g Eutrema salsugineum HOM05D004972 ORTHO05D006309 1.4e-90 336.7 225 72.0
Nn2g14330 Nelumbo nucifera HOM05D004972 ORTHO05D006309 4.1e-90 335.1 225 72.9
CARHR200210 Cardamine hirsuta HOM05D004972 ORTHO05D006309 5.4e-90 334.7 227 72.7
Sp6g30750 Schrenkiella parvula HOM05D004972 ORTHO05D006309 5.4e-90 334.7 225 71.6
Lj5g0002039 Lotus japonicus HOM05D004972 ORTHO05D006309 7.0e-90 334.3 225 71.6
A10p24970 Brassica napus HOM05D004972 ORTHO05D006309 1.2e-89 333.6 225 71.6
BraA10t44559Z Brassica rapa HOM05D004972 ORTHO05D006309 2.7e-89 332.4 225 71.1
Ca_11105_v3 Cicer arietinum L. HOM05D004972 ORTHO05D006309 2.7e-89 332.4 225 71.6
BcaC04g19133 Brassica carinata HOM05D004972 ORTHO05D006309 3.5e-89 332.0 225 71.1
BolC9t59224H Brassica oleracea HOM05D004972 ORTHO05D006309 3.5e-89 332.0 225 71.1
Lalb_Chr06g0165661 Lupinus albus HOM05D004972 ORTHO05D006309 4.5e-89 331.6 225 71.1
Psat6g222200 Pisum sativum HOM05D004972 ORTHO05D006309 5.9e-89 331.3 225 71.6
C09p63840 Brassica napus HOM05D004972 ORTHO05D006309 7.7e-89 330.9 225 70.7
MBI07_g18719_MAGBIO Magnolia biondii HOM05D004972 ORTHO05D006309 1.3e-88 330.1 228 71.1
Phvul.007G035700 Phaseolus vulgaris HOM05D004972 ORTHO05D006309 1.3e-88 330.1 225 70.7
TPR.G4886 Trifolium pratense HOM05D004972 ORTHO05D006309 1.7e-88 329.7 225 70.2
VMungo0720G3073 Vigna mungo HOM05D004972 ORTHO05D006309 1.7e-88 329.7 225 70.2
unitig_0.g2334 Utricularia gibba HOM05D004972 ORTHO05D006309 9.5e-87 323.9 216 72.7
Glyma.10G266000 Glycine max HOM05D004972 ORTHO05D006309 1.2e-86 323.6 225 70.2
Glyma.20G124600 Glycine max HOM05D004972 ORTHO05D006309 3.0e-85 318.9 226 69.5
Nn6g34668 Nelumbo nucifera HOM05D004972 ORTHO05D006309 6.8e-85 317.8 225 70.7
Medtr1g108610 Medicago truncatula HOM05D004972 ORTHO05D006309 8.9e-85 317.4 232 67.2
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 1.2e-84 317.0 228 68.9
PSO063G1195 Papaver somniferum HOM05D004972 ORTHO05D006309 1.2e-84 317.0 227 69.2
Aa31LG3G14420 Aethionema arabicum HOM05D004972 ORTHO05D006309 2.6e-84 315.8 225 68.4
PSO782G3547 Papaver somniferum HOM05D004972 ORTHO05D006309 5.7e-84 314.7 227 68.3
Haze_11044 Corylus avellana HOM05D004972 ORTHO05D006309 1.8e-82 309.7 225 68.9
ClCG05G022260 Citrullus lanatus HOM05D004972 ORTHO05D006309 5.4e-82 308.1 225 68.4
Aqoxy3G04360 Aquilegia oxysepala HOM05D004972 ORTHO05D006309 1.0e-80 303.9 225 64.9
PGR119G0027 Punica granatum HOM05D004972 ORTHO05D006309 1.9e-79 299.7 225 67.6
arahy.Tifrunner.gnm1.ann1.DS7XTJ Arachis hypogaea HOM05D004972 ORTHO05D006309 4.3e-79 298.5 225 64.4
arahy.Tifrunner.gnm1.ann1.F2FLG1 Arachis hypogaea HOM05D004972 ORTHO05D006309 1.2e-78 297.0 225 64.4
MELO3C012297.2 Cucumis melo HOM05D004972 ORTHO05D006309 2.1e-78 296.2 177 78.0
arahy.Tifrunner.gnm1.ann1.YXX0BK Arachis hypogaea HOM05D004972 ORTHO05D006309 4.7e-78 295.0 225 64.4
Migut.L00658 Erythranthe guttata HOM05D004972 ORTHO05D006309 1.4e-77 293.5 225 69.3
Os04g0662900 Oryza sativa ssp. japonica HOM05D004972 ORTHO05D006309 5.2e-77 291.6 221 62.4
HPP92_015449 Vanilla planifolia HOM05D004972 ORTHO05D006309 2.0e-73 279.6 228 60.5
CDE09G0103 Ceratophyllum demersum HOM05D004972 ORTHO05D006309 2.7e-73 279.3 227 61.2
Gorai.008G060200 Gossypium raimondii HOM05D004972 ORTHO05D006309 5.6e-71 271.6 225 64.0
Sabra10G0085700 Salix brachista HOM05D004972 ORTHO05D006309 6.2e-70 268.1 260 55.8
Sabra10G0087400 Salix brachista HOM05D004972 ORTHO05D006309 6.2e-70 268.1 260 55.8
ATR0315G127 Amborella trichopoda HOM05D004972 ORTHO05D006309 5.2e-69 265.0 226 58.8
Zm00001eb246210 Zea mays HOM05D004972 ORTHO05D006309 8.9e-69 264.2 201 61.7
AUR62041239 Chenopodium quinoa HOM05D004972 ORTHO05D006309 5.8e-68 261.5 174 73.0
BolC2t06543H Brassica oleracea HOM05D004972 ORTHO05D006309 4.9e-67 258.5 229 60.3
Duzib138G1958 Durio zibethinus HOM05D004972 ORTHO05D006309 1.6e-62 243.4 250 54.8
arahy.Tifrunner.gnm1.ann1.UKIC3J Arachis hypogaea HOM05D004972 ORTHO05D006309 1.1e-61 240.7 245 52.2
SEGI_23519 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 2.3e-61 239.6 224 51.3
C02p06000 Brassica napus HOM05D004972 ORTHO05D006309 7.1e-58 228.0 164 67.7
Pp3c11_22300 Physcomitrium patens HOM05D004972 ORTHO05D006309 6.2e-54 214.9 225 48.4
Mapoly0012s0169 Marchantia polymorpha HOM05D004972 ORTHO05D006309 4.4e-52 208.8 224 47.3
AagrBONN_evm.TU.Sc2ySwM_344.4231 Anthoceros agrestis HOM05D004972 ORTHO05D006309 8.7e-48 194.5 225 45.3
FAN17G1863 Fragaria x ananassa HOM05D004972 ORTHO05D006309 2.8e-46 189.5 122 71.3
Cre08.g364250 Chlamydomonas reinhardtii HOM05D004972 ORTHO05D006309 2.6e-44 183.0 212 44.8
MCO09G688 Micromonas commoda HOM05D004972 ORTHO05D006309 1.4e-42 177.2 235 42.6
PRCOL_00004209 Prasinoderma coloniale HOM05D004972 ORTHO05D006309 1.6e-41 173.7 228 43.0
BcaNung01872 Brassica carinata HOM05D004972 ORTHO05D006309 1.4e-37 160.6 130 61.5
CSS0029214 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.5e-36 157.1 100 73.0
CSS0034104 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.5e-36 157.1 100 73.0
SHI16322 Sapria himalayana HOM05D004972 ORTHO05D006309 2.4e-34 149.8 206 45.1
Pp3c7_4620 Physcomitrium patens HOM05D004972 ORTHO05D006309 1.9e-31 140.2 150 50.7
Hma1.2p1_1593F.1_g292560 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 3.2e-26 122.9 72 72.2
CSS0010746 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 3.4e-20 102.8 51 92.2
CSS0040756 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 3.4e-20 102.8 51 92.2
Zm00001eb219440 Zea mays HOM05D009386 ORTHO05D011419 3.4e-20 102.8 66 63.6
Hma1.2p1_0813F.1_g222490 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 5.9e-20 102.1 57 87.7
CSS0044245 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 7.6e-20 101.7 51 92.2
Zm00001eb025950 Zea mays HOM05D004972 ORTHO05D006309 1.2e-17 94.4 77 54.5
Gorai.001G193400 Gossypium raimondii HOM05D004972 ORTHO05D029864 3.0e-16 89.7 105 47.6
Gohir.D01G091150 Gossypium hirsutum HOM05D004972 ORTHO05D029864 3.3e-15 86.3 122 43.4
CDE02G3434 Ceratophyllum demersum HOM05D004972 ORTHO05D000215 1.3e-14 84.3 76 60.5
Gorai.010G145600 Gossypium raimondii HOM05D004972 ORTHO05D029864 1.3e-14 84.3 79 55.7
CSS0013064 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 3.1e-13 79.7 51 80.4
SEGI_16480 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 5.3e-13 79.0 51 74.5
Cfa026650 Carpinus fangiana HOM05D004972 ORTHO05D006309 3.4e-12 76.3 223 32.3
Gohir.D11G085800 Gossypium hirsutum HOM05D001136 ORTHO05D011526 2.5e-10 70.1 53 66.0
SHI16326 Sapria himalayana HOM05D004972 ORTHO05D006309 1.0e-08 64.7 51 62.7
Gorai.001G223500 Gossypium raimondii HOM05D004972 ORTHO05D029864 2.6e-07 60.1 51 60.8


User provided reference genes

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