Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 4.6e-133 478.0 265 100.0
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 1.7e-111 406.4 250 92.4
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 3.8e-111 405.2 250 92.4
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 1.1e-105 387.1 250 87.2
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 3.8e-103 378.6 243 87.7
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 1.5e-102 376.7 257 86.4
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 4.2e-94 348.6 202 86.6
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 2.1e-93 346.3 250 76.0
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 1.0e-92 344.0 249 76.3
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 1.4e-92 343.6 250 76.0
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 3.0e-92 342.4 243 74.9
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 4.4e-91 338.6 250 75.6
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 1.3e-90 337.0 247 74.1
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 1.3e-90 337.0 250 75.6
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 2.8e-90 335.9 247 75.7
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 4.9e-90 335.1 251 75.7
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 8.3e-90 334.3 251 74.5
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 1.4e-89 333.6 253 74.3
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 1.8e-89 333.2 249 71.5
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.8e-89 333.2 250 74.4
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.4e-89 332.8 251 74.1
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 3.1e-89 332.4 251 75.3
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 3.1e-89 332.4 250 74.8
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 7.0e-89 331.3 251 71.7
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 9.2e-89 330.9 240 77.1
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 1.6e-88 330.1 250 72.8
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 4.5e-88 328.6 251 75.3
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 7.8e-88 327.8 250 72.8
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 2.9e-87 325.9 252 73.4
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 6.6e-87 324.7 250 71.2
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 1.1e-86 323.9 250 71.2
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 1.9e-86 323.2 251 73.3
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 2.5e-86 322.8 248 72.6
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 4.3e-86 322.0 250 72.4
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 5.6e-86 321.6 249 69.5
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 7.3e-86 321.2 250 71.2
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 7.3e-86 321.2 250 72.8
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 1.2e-85 320.5 251 73.3
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 1.2e-85 320.5 260 68.5
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 1.6e-85 320.1 249 71.9
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 2.1e-85 319.7 250 71.6
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 3.6e-85 318.9 248 73.0
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 4.7e-85 318.5 249 69.1
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 6.1e-85 318.2 248 69.8
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 1.0e-84 317.4 251 72.5
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 1.0e-84 317.4 251 72.1
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 1.4e-84 317.0 248 72.2
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 1.4e-84 317.0 249 73.1
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 1.4e-84 317.0 248 73.0
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 1.8e-84 316.6 253 72.7
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 3.1e-84 315.8 251 70.1
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 5.2e-84 315.1 250 72.8
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 6.8e-84 314.7 250 72.8
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 8.9e-84 314.3 238 75.2
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 1.2e-83 313.9 245 72.2
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.5e-83 313.5 246 72.0
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 1.5e-83 313.5 249 69.9
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 2.0e-83 313.2 250 72.4
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 9.8e-83 310.8 249 71.1
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 1.3e-82 310.5 250 67.6
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 1.3e-82 310.5 251 69.3
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 1.7e-82 310.1 239 73.2
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 2.2e-82 309.7 251 70.1
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 2.9e-82 309.3 248 72.2
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 2.9e-82 309.3 251 70.5
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 3.7e-82 308.9 245 71.4
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 6.4e-82 308.1 241 73.0
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 3.2e-81 305.8 255 70.2
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 4.1e-81 305.4 251 70.9
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 5.4e-81 305.1 252 69.4
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 5.4e-81 305.1 242 69.0
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 9.2e-81 304.3 236 72.9
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.2e-80 303.9 246 72.4
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 1.6e-80 303.5 243 72.8
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 1.6e-80 303.5 267 67.0
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.0e-80 303.1 252 69.4
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 2.0e-80 303.1 205 74.6
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 3.5e-80 302.4 249 69.5
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 4.6e-80 302.0 252 71.4
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 6.0e-80 301.6 244 71.7
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 6.0e-80 301.6 246 72.0
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 2.3e-79 299.7 248 70.2
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 2.3e-79 299.7 248 69.4
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 3.0e-79 299.3 236 71.6
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 1.1e-78 297.4 235 71.5
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 1.5e-78 297.0 252 68.7
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 1.5e-78 297.0 248 68.1
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 1.9e-78 296.6 346 51.7
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 2.5e-78 296.2 259 67.2
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 9.5e-78 294.3 252 67.9
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 1.2e-77 293.9 194 75.8
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 2.1e-77 293.1 244 65.6
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 2.1e-77 293.1 244 68.4
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 8.0e-77 291.2 242 69.0
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 1.4e-76 290.4 249 67.9
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 4.0e-76 288.9 242 68.2
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 6.8e-76 288.1 249 68.7
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 2.6e-75 286.2 248 66.9
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 3.4e-75 285.8 243 67.5
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 3.2e-73 279.3 248 66.1
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 1.6e-72 276.9 272 60.7
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 2.1e-72 276.6 244 63.9
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 4.6e-72 275.4 293 60.1
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 8.6e-71 271.2 250 65.2
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.9e-70 270.0 250 64.8
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 1.9e-70 270.0 249 63.5
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 2.5e-70 269.6 225 61.8
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 4.0e-68 262.3 249 63.5
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 1.2e-67 260.8 247 59.5
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 4.9e-66 255.4 253 60.9
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 8.3e-66 254.6 334 50.3
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 1.4e-65 253.8 241 66.0
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 2.7e-64 249.6 218 60.6
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 8.6e-63 244.6 213 61.5
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 4.7e-61 238.8 249 57.4
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 2.6e-59 233.0 177 64.4
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 1.3e-55 220.7 248 57.7
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 6.6e-55 218.4 252 53.2
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 6.6e-55 218.4 243 56.0
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.9e-54 216.9 147 76.9
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 2.5e-54 216.5 224 53.6
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 6.2e-53 211.8 242 54.1
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 6.9e-52 208.4 224 53.6
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 1.5e-51 207.2 136 77.9
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 2.3e-47 193.4 168 67.9
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 8.1e-45 184.9 142 69.0
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 1.1e-44 184.5 131 71.8
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 3.9e-39 166.0 143 69.2
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 7.4e-38 161.8 134 64.2
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 5.3e-36 155.6 255 41.6
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 1.7e-34 150.6 160 51.9
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 4.6e-32 142.5 228 38.6
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 1.8e-31 140.6 199 52.8
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 5.7e-30 135.6 337 38.6
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 2.4e-28 130.2 245 37.6
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 6.9e-28 128.6 229 36.7
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 3.8e-26 122.9 93 66.7
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 1.1e-25 121.3 115 70.4
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 4.6e-24 115.9 103 68.9
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 8.7e-23 111.7 71 78.9
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 1.1e-20 104.8 80 66.2
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 2.4e-20 103.6 80 65.0
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.5e-19 100.9 60 80.0
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 5.3e-12 75.9 76 67.1
Cfa022882 Carpinus fangiana HOM05D005017 ORTHO05D006044 1.5e-11 74.3 160 35.0
Migut.I01159 Erythranthe guttata HOM05D005017 ORTHO05D006044 2.7e-08 63.5 58 55.2
Pp3c6_13820 Physcomitrium patens HOM05D005017 ORTHO05D006044 4.7e-08 62.8 184 32.1
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 1.4e-07 61.2 38 73.7


User provided reference genes

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