Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1663.1 Capsicum annuum HOM05D005191 ORTHO05D006725 0.0e+00 1465.7 726 100.0
Sopen07g001100 Solanum pennellii HOM05D005191 ORTHO05D006725 0.0e+00 1359.0 729 92.5
Solyc07g007810.3 Solanum lycopersicum HOM05D005191 ORTHO05D006725 0.0e+00 1310.8 729 90.0
Nitab4.5_0000374g0090 Nicotiana tabacum HOM05D005191 ORTHO05D006725 0.0e+00 1255.7 689 89.6
Peaxi162Scf00088g01225 Petunia axillaris HOM05D005191 ORTHO05D006725 0.0e+00 1236.9 711 87.1
Nitab4.5_0005159g0010 Nicotiana tabacum HOM05D005191 ORTHO05D006725 0.0e+00 1121.3 615 89.3
CSS0021683 Camellia sinensis var. sinensis HOM05D005191 ORTHO05D006725 0.0e+00 1104.0 736 72.8
QL02p090053 Quercus lobata HOM05D005191 ORTHO05D006725 0.0e+00 1081.6 714 72.1
MSTRG.26350 Avicennia marina HOM05D005191 ORTHO05D006725 5.0e-312 1073.9 730 71.5
Cc06_g08000 Coffea canephora HOM05D005191 ORTHO05D006725 2.2e-310 1068.5 719 72.6
Cc06_g08010 Coffea canephora HOM05D005191 ORTHO05D006725 2.2e-310 1068.5 719 72.6
CiPaw.03G249200 Carya illinoinensis HOM05D005191 ORTHO05D006725 4.9e-310 1067.4 710 71.4
Migut.K00420 Erythranthe guttata HOM05D005191 ORTHO05D006725 3.0e-307 1058.1 731 70.0
Thecc.09G133700 Theobroma cacao HOM05D005191 ORTHO05D006725 4.3e-306 1054.3 725 71.6
Cfa002299 Carpinus fangiana HOM05D005191 ORTHO05D006725 5.6e-306 1053.9 724 70.3
Gorai.004G107900 Gossypium raimondii HOM05D005191 ORTHO05D006725 8.1e-305 1050.0 725 70.3
Lj7A435G51 Lonicera japonica HOM05D005191 ORTHO05D006725 1.4e-304 1049.3 731 69.9
Gohir.A08G088900 Gossypium hirsutum HOM05D005191 ORTHO05D006725 9.0e-304 1046.6 725 70.1
SGA_v2.0_scaffold63G21813 Striga asiatica HOM05D005191 ORTHO05D006725 2.9e-302 1041.6 731 69.4
Ciclev10007583m.g Citrus clementina HOM05D005191 ORTHO05D006725 7.1e-301 1036.9 726 70.2
Rhsim03G0251800 Rhododendron simsii HOM05D005191 ORTHO05D006725 2.7e-300 1035.0 712 70.8
Prupe.7G249300 Prunus persica HOM05D005191 ORTHO05D006725 3.9e-299 1031.2 716 69.4
MD02G1022800 Malus domestica HOM05D005191 ORTHO05D006725 8.7e-299 1030.0 709 70.0
COL.COLO4_15579 Corchorus olitorius HOM05D005191 ORTHO05D006725 6.2e-297 1023.8 725 70.1
MD15G1165500 Malus domestica HOM05D005191 ORTHO05D006725 1.1e-296 1023.1 722 69.0
TWI63G0111 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 5.3e-296 1020.8 710 69.2
CANSAT11G2540 Cannabis sativa HOM05D005191 ORTHO05D006725 9.0e-296 1020.0 720 67.2
TAR625G1134 Trochodendron aralioides HOM05D005191 ORTHO05D006725 2.6e-295 1018.5 723 69.7
ECA236G3625 Erigeron canadensis HOM05D005191 ORTHO05D006725 2.2e-294 1015.4 709 68.7
RcHm_v2.0_Chr2g0087561 Rosa chinensis HOM05D005191 ORTHO05D006725 3.8e-294 1014.6 718 68.4
TWI32G0152 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 3.8e-294 1014.6 710 67.6
Sc18g0000280 Simmondsia chinensis HOM05D005191 ORTHO05D006725 7.1e-293 1010.4 718 68.1
FvH4_1g02530 Fragaria vesca HOM05D005191 ORTHO05D006725 3.5e-292 1008.1 725 67.3
Lsat_1_v5_gn_8_61061 Lactuca sativa HOM05D005191 ORTHO05D006725 3.5e-292 1008.1 701 69.3
FAN19G1407 Fragaria x ananassa HOM05D005191 ORTHO05D006725 6.0e-292 1007.3 725 67.3
FAN26G1428 Fragaria x ananassa HOM05D005191 ORTHO05D006725 7.9e-292 1006.9 718 68.0
FAN23G0864 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.8e-291 1005.7 718 67.8
Potri.006G065000 Populus trichocarpa HOM05D005191 ORTHO05D006725 1.1e-290 1003.0 710 68.9
FAN28G1162 Fragaria x ananassa HOM05D005191 ORTHO05D006725 5.6e-290 1000.7 720 67.2
Glyma.17G110600 Glycine max HOM05D005191 ORTHO05D006725 1.4e-288 996.1 720 67.4
HanXRQChr05g0143851 Helianthus annuus HOM05D005191 ORTHO05D006725 4.0e-288 994.6 712 68.5
Lalb_Chr12g0198261 Lupinus albus HOM05D005191 ORTHO05D006725 6.9e-288 993.8 715 68.5
Aqoxy7G02403 Aquilegia oxysepala HOM05D005191 ORTHO05D006725 8.4e-286 986.9 706 67.6
Potri.T124807 Populus trichocarpa HOM05D005191 ORTHO05D006725 5.5e-285 984.2 710 68.3
Nn2g12129 Nelumbo nucifera HOM05D005191 ORTHO05D006725 9.3e-285 983.4 720 67.4
Potri.018G125171 Populus trichocarpa HOM05D005191 ORTHO05D006725 1.2e-284 983.0 710 68.3
Gohir.D08G100100 Gossypium hirsutum HOM05D005191 ORTHO05D006725 2.1e-284 982.2 682 69.6
Phvul.003G169500 Phaseolus vulgaris HOM05D005191 ORTHO05D006725 7.9e-284 980.3 715 67.0
VMungo1215G2132 Vigna mungo HOM05D005191 ORTHO05D006725 7.9e-284 980.3 715 67.0
CsaV3_1G027890 Cucumis sativus L. HOM05D005191 ORTHO05D006725 2.3e-283 978.8 711 67.4
Glyma.13G160800 Glycine max HOM05D005191 ORTHO05D006725 3.0e-283 978.4 719 66.8
Eucgr.E03534 Eucalyptus grandis HOM05D005191 ORTHO05D006725 8.7e-283 976.9 720 66.2
PSO170G6846 Papaver somniferum HOM05D005191 ORTHO05D006725 1.5e-282 976.1 703 66.7
PSO017G2350 Papaver somniferum HOM05D005191 ORTHO05D006725 3.3e-282 974.9 703 66.4
Sed0022210 Sechium edule HOM05D005191 ORTHO05D006725 4.8e-281 971.1 709 65.9
Cpa.g.sc46.51 Carica papaya HOM05D005191 ORTHO05D006725 6.9e-280 967.2 724 66.3
AUR62013300 Chenopodium quinoa HOM05D005191 ORTHO05D006725 2.6e-279 965.3 716 66.1
THA.LOC104826555 Tarenaya hassleriana HOM05D005191 ORTHO05D006725 3.8e-278 961.4 711 65.5
Psat4g036440 Pisum sativum HOM05D005191 ORTHO05D006725 5.0e-278 961.1 728 64.8
arahy.Tifrunner.gnm1.ann1.0L2UMW Arachis hypogaea HOM05D005191 ORTHO05D006725 1.4e-277 959.5 724 65.1
arahy.Tifrunner.gnm1.ann1.W0WM15 Arachis hypogaea HOM05D005191 ORTHO05D006725 3.5e-276 954.9 724 64.8
Lj4g0015768 Lotus japonicus HOM05D005191 ORTHO05D006725 1.0e-275 953.4 722 66.1
Sabra18G0106500 Salix brachista HOM05D005191 ORTHO05D006725 3.3e-274 948.3 734 64.3
TPR.G7618 Trifolium pratense HOM05D005191 ORTHO05D006725 1.6e-273 946.0 687 68.1
Manes.06G046300 Manihot esculenta HOM05D005191 ORTHO05D006725 1.5e-271 939.5 727 64.1
Duzib150G0407 Durio zibethinus HOM05D005191 ORTHO05D006725 5.0e-270 934.5 731 64.6
ClCG06G011590 Citrullus lanatus HOM05D005191 ORTHO05D006725 2.5e-269 932.2 765 61.7
Dinv41468 Davidia involucrata HOM05D005191 ORTHO05D006725 8.8e-267 923.7 597 75.5
EL10Ac8g18733 Beta vulgaris HOM05D005191 ORTHO05D006725 2.2e-265 919.1 823 57.6
Hund26552 Selenicereus undatus HOM05D005191 ORTHO05D006725 7.7e-263 910.6 710 63.8
Actinidia26371 Actinidia chinensis HOM05D005191 ORTHO05D006725 7.4e-258 894.0 714 63.6
DCAR_009327 Daucus carota HOM05D005191 ORTHO05D006725 4.8e-257 891.3 731 62.7
AUR62011184 Chenopodium quinoa HOM05D005191 ORTHO05D006725 4.1e-256 888.3 728 61.7
PGR142G3543 Punica granatum HOM05D005191 ORTHO05D006725 8.5e-254 880.6 708 63.0
A06p26710 Brassica napus HOM05D005191 ORTHO05D006725 1.4e-248 863.2 709 60.6
Sp3g26260 Schrenkiella parvula HOM05D005191 ORTHO05D006725 1.3e-246 856.7 715 59.4
BcaB02g10775 Brassica carinata HOM05D005191 ORTHO05D006725 4.2e-245 851.7 709 60.1
Carub.0003s2755 Capsella rubella HOM05D005191 ORTHO05D006725 5.5e-245 851.3 711 59.8
Aa31LG8G12200 Aethionema arabicum HOM05D005191 ORTHO05D006725 7.2e-245 850.9 711 59.5
AL3G44790 Arabidopsis lyrata HOM05D005191 ORTHO05D006725 9.4e-245 850.5 714 60.4
BcaC01g02222 Brassica carinata HOM05D005191 ORTHO05D006725 1.6e-244 849.7 709 60.2
C03p67700 Brassica napus HOM05D005191 ORTHO05D006725 1.6e-244 849.7 709 60.2
AT2G11000 Arabidopsis thaliana HOM05D005191 ORTHO05D006725 3.6e-244 848.6 729 59.3
BolSC21t60229H Brassica oleracea HOM05D005191 ORTHO05D006725 3.4e-242 842.0 713 59.3
Medtr4g115450 Medicago truncatula HOM05D005191 ORTHO05D006725 5.2e-235 818.1 616 64.6
Atru.chr7.1956 Acer truncatum HOM05D005191 ORTHO05D006725 8.8e-235 817.4 536 72.4
BraA06t25606Z Brassica rapa HOM05D005191 ORTHO05D006725 3.1e-232 808.9 727 57.4
ATR0800G098 Amborella trichopoda HOM05D005191 ORTHO05D006725 5.0e-230 801.6 661 61.1
SalBow1G1849 Salvia bowleyana HOM05D005191 ORTHO05D006725 1.7e-225 786.6 622 61.9
MELO3C010304.2 Cucumis melo HOM05D005191 ORTHO05D006725 3.4e-218 762.3 731 55.4
GSVIVG01015604001 Vitis vinifera HOM05D005191 ORTHO05D006725 3.7e-201 705.7 474 70.5
Oeu052176.1 Olea europaea HOM05D005191 ORTHO05D006725 4.9e-201 705.3 473 71.5
Thhalv10022576m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 1.6e-199 700.3 609 57.6
SEGI_14008 Sequoiadendron giganteum HOM05D005191 ORTHO05D006725 2.1e-191 673.3 720 50.7
vmacro06157 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 1.4e-187 660.6 469 69.1
Ah.14g079340 Amaranthus hybridus HOM05D005191 ORTHO05D006725 2.4e-179 633.3 468 64.7
Mapoly0005s0239 Marchantia polymorpha HOM05D005191 ORTHO05D006725 1.3e-174 617.5 740 45.9
HPP92_010843 Vanilla planifolia HOM05D005191 ORTHO05D006725 7.6e-170 601.7 465 63.4
CARHR104890 Cardamine hirsuta HOM05D005191 ORTHO05D006725 1.7e-169 600.5 466 63.7
Pp3c26_8550 Physcomitrium patens HOM05D005191 ORTHO05D006725 4.6e-167 592.4 736 44.3
Hund26401 Selenicereus undatus HOM05D005191 ORTHO05D006725 1.1e-160 571.2 480 59.2
Ca_21665_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 5.5e-152 542.3 390 68.2
Haze_25489 Corylus avellana HOM05D005191 ORTHO05D006725 1.5e-149 534.3 440 63.2
Zm00001eb192130 Zea mays HOM05D005191 ORTHO05D006725 2.2e-148 530.4 420 62.9
AagrBONN_evm.TU.Sc2ySwM_344.2372 Anthoceros agrestis HOM05D005191 ORTHO05D006725 9.1e-147 525.0 687 42.5
unitig_0.g2715 Utricularia gibba HOM05D005191 ORTHO05D006725 1.5e-141 507.7 413 63.4
Haze_25491 Corylus avellana HOM05D005191 ORTHO05D006725 2.1e-135 487.3 381 62.7
Os02g0803250 Oryza sativa ssp. japonica HOM05D005191 ORTHO05D006725 4.5e-130 469.5 689 41.1
CBR_g29413 Chara braunii HOM05D005191 ORTHO05D006725 5.5e-128 462.6 744 37.6
SMO174G0034 Selaginella moellendorffii HOM05D005191 ORTHO05D006725 1.1e-120 438.3 736 38.0
Ca_06948_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 1.0e-113 415.2 327 62.7
CDE05G1862 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 7.3e-112 409.1 368 58.4
Sabra06G0047500 Salix brachista HOM05D005191 ORTHO05D006725 2.0e-109 401.0 308 63.0
Actinidia38723 Actinidia chinensis HOM05D005191 ORTHO05D006725 2.0e-106 391.0 295 66.1
vmacro06156 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 7.1e-83 312.8 245 62.9
GSVIVG01002648001 Vitis vinifera HOM05D005191 ORTHO05D006725 1.6e-79 301.6 184 79.9
Psat6g224720 Pisum sativum HOM05D005191 ORTHO05D006725 1.2e-69 268.9 200 63.5
Nitab4.5_0005159g0020 Nicotiana tabacum HOM05D005191 ORTHO05D006725 8.4e-52 209.5 115 87.8
FAN06G0842 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.1e-46 192.6 314 38.9
unitig_0.g2716 Utricularia gibba HOM05D005191 ORTHO05D006725 4.5e-45 187.2 150 61.3
Rhsim13G0106800 Rhododendron simsii HOM05D005191 ORTHO05D006725 1.2e-42 179.1 142 66.9
CDE05G1976 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 3.3e-40 171.0 159 56.0
Actinidia38722 Actinidia chinensis HOM05D005191 ORTHO05D006725 6.9e-38 163.3 161 52.8
TPR.G8947 Trifolium pratense HOM05D005191 ORTHO05D006725 2.2e-36 158.3 98 75.5
PRCOL_00001705 Prasinoderma coloniale HOM05D005191 ORTHO05D006725 2.4e-30 138.3 536 25.7
FAN06G5005 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.3e-28 132.5 267 35.2
Cre06.g300650 Chlamydomonas reinhardtii HOM05D005191 ORTHO05D006725 2.9e-28 131.3 804 21.8
RcHm_v2.0_Chr5g0051701 Rosa chinensis HOM05D005191 ORTHO05D006725 6.5e-28 130.2 140 48.6
FAN10G4062 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.8e-25 122.1 123 56.9
FvH4_7g23890 Fragaria vesca HOM05D005191 ORTHO05D006725 5.2e-25 120.6 147 42.2
FAN10G2766 Fragaria x ananassa HOM05D005191 ORTHO05D006725 7.2e-19 100.1 83 56.6
FAN15G1193 Fragaria x ananassa HOM05D002169 ORTHO05D006927 2.1e-18 98.6 74 63.5
MBI13_g29624_MAGBIO Magnolia biondii HOM05D005191 ORTHO05D006725 1.8e-17 95.5 63 65.1
Rhsim05G0138400 Rhododendron simsii HOM05D005191 ORTHO05D006725 4.0e-17 94.4 121 52.1
FAN26G2291 Fragaria x ananassa HOM05D005191 ORTHO05D006725 8.8e-17 93.2 85 54.1
Rhsim10G0150400 Rhododendron simsii HOM05D005191 ORTHO05D030537 1.3e-12 79.3 51 76.5
COL.COLO4_23752 Corchorus olitorius HOM05D005191 ORTHO05D016248 1.5e-11 75.9 59 67.8
GSVIVG01012804001 Vitis vinifera HOM05D005191 ORTHO05D006725 5.5e-11 73.9 60 58.3
FvH4_1g29180 Fragaria vesca HOM05D005191 ORTHO05D025363 9.4e-11 73.2 55 63.6
COL.COLO4_21409 Corchorus olitorius HOM05D005191 ORTHO05D016248 1.2e-10 72.8 56 69.6
Sp3g26280 Schrenkiella parvula HOM05D005191 ORTHO05D012938 3.4e-08 64.7 46 60.9
Thhalv10022959m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 1.7e-07 62.4 97 38.1


User provided reference genes

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