Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1661.12 Capsicum annuum HOM05D002335 ORTHO05D006282 1.9e-162 575.9 307 100.0
Sopen12g004050 Solanum pennellii HOM05D002335 ORTHO05D006282 3.1e-141 505.4 349 81.1
Solyc12g009100.2 Solanum lycopersicum HOM05D002335 ORTHO05D006282 5.4e-141 504.6 349 80.8
Peaxi162Scf00928g00036 Petunia axillaris HOM05D002335 ORTHO05D006282 5.8e-127 458.0 327 78.3
Hma1.2p1_0169F.1_g074510 Hydrangea macrophylla HOM05D002335 ORTHO05D006282 2.1e-121 439.5 343 71.1
Nitab4.5_0011754g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006282 5.8e-119 431.4 348 73.0
Dinv42395 Davidia involucrata HOM05D002335 ORTHO05D006282 1.7e-115 419.9 349 69.1
Cfa002987 Carpinus fangiana HOM05D002335 ORTHO05D006282 1.1e-114 417.2 347 66.6
Ciclev10008755m.g Citrus clementina HOM05D002335 ORTHO05D006282 5.6e-114 414.8 346 66.8
Dinv25558 Davidia involucrata HOM05D002335 ORTHO05D006282 2.1e-113 412.9 341 68.6
GSVIVG01015081001 Vitis vinifera HOM05D002335 ORTHO05D006282 2.1e-113 412.9 345 67.5
Migut.J00924 Erythranthe guttata HOM05D002335 ORTHO05D006282 6.2e-113 411.4 346 67.3
CiPaw.04G143000 Carya illinoinensis HOM05D002335 ORTHO05D006282 5.8e-111 404.8 345 64.3
Gohir.D13G196375 Gossypium hirsutum HOM05D002335 ORTHO05D006282 2.9e-110 402.5 347 64.8
Gorai.013G224300 Gossypium raimondii HOM05D002335 ORTHO05D006282 3.7e-110 402.1 348 64.7
Cc06_g12190 Coffea canephora HOM05D002335 ORTHO05D006282 1.4e-109 400.2 346 64.5
Gohir.A13G190800 Gossypium hirsutum HOM05D002335 ORTHO05D006282 1.6e-108 396.7 348 64.1
Prupe.7G198700 Prunus persica HOM05D002335 ORTHO05D006282 1.0e-107 394.0 327 66.4
Nn8g38636 Nelumbo nucifera HOM05D002335 ORTHO05D006282 5.1e-107 391.7 348 62.9
CSS0005090 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006282 6.6e-107 391.3 346 65.0
Thecc.09G076700 Theobroma cacao HOM05D002335 ORTHO05D006282 8.6e-107 391.0 347 63.7
FvH4_1g08690 Fragaria vesca HOM05D002335 ORTHO05D006282 1.1e-106 390.6 348 63.5
TAR383G0969 Trochodendron aralioides HOM05D002335 ORTHO05D006282 3.3e-106 389.0 348 64.1
ClCG03G015070 Citrullus lanatus HOM05D002335 ORTHO05D006282 5.6e-106 388.3 347 61.7
MSTRG.19458 Avicennia marina HOM05D002335 ORTHO05D006282 2.1e-105 386.3 346 63.3
VMungo1309G0226 Vigna mungo HOM05D002335 ORTHO05D006282 2.1e-105 386.3 347 61.4
HanXRQChr04g0126011 Helianthus annuus HOM05D002335 ORTHO05D006282 6.2e-105 384.8 336 62.8
Potri.018G056500 Populus trichocarpa HOM05D002335 ORTHO05D006282 8.1e-105 384.4 347 62.8
Duzib187G0696 Durio zibethinus HOM05D002335 ORTHO05D006282 1.4e-104 383.6 346 63.0
Nitab4.5_0000073g0170 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.4e-104 383.6 382 62.0
TWI34G0307 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 1.4e-104 383.6 349 62.5
ECA236G4601 Erigeron canadensis HOM05D002335 ORTHO05D006282 2.4e-104 382.9 333 61.9
TPR.G27760 Trifolium pratense HOM05D002335 ORTHO05D006282 5.2e-104 381.7 347 61.1
Glyma.15G177700 Glycine max HOM05D002335 ORTHO05D006282 8.9e-104 380.9 347 61.1
PSO135G0390 Papaver somniferum HOM05D002335 ORTHO05D006282 2.6e-103 379.4 346 61.0
Aqoxy7G04129 Aquilegia oxysepala HOM05D002335 ORTHO05D006282 7.6e-103 377.9 346 62.1
Sopen07g021360 Solanum pennellii HOM05D002335 ORTHO05D006282 7.6e-103 377.9 340 64.7
Sed0016034 Sechium edule HOM05D002335 ORTHO05D006282 2.2e-102 376.3 345 60.6
Manes.16G095200 Manihot esculenta HOM05D002335 ORTHO05D006282 3.8e-102 375.6 341 61.9
EL10Ac8g19056 Beta vulgaris HOM05D002335 ORTHO05D006282 6.4e-102 374.8 368 59.8
Eucgr.C03328 Eucalyptus grandis HOM05D002335 ORTHO05D006282 8.4e-102 374.4 339 62.2
CsaV3_1G041060 Cucumis sativus L. HOM05D002335 ORTHO05D006282 1.1e-101 374.0 347 60.8
MELO3C015522.2 Cucumis melo HOM05D002335 ORTHO05D006282 2.4e-101 372.9 347 60.5
Duzib168G0796 Durio zibethinus HOM05D002335 ORTHO05D006282 4.2e-101 372.1 335 62.4
RcHm_v2.0_Chr2g0095141 Rosa chinensis HOM05D002335 ORTHO05D006282 4.2e-101 372.1 342 61.4
Aa31sc133G10 Aethionema arabicum HOM05D002335 ORTHO05D006282 7.1e-101 371.3 344 62.2
CANSAT56G2952 Cannabis sativa HOM05D002335 ORTHO05D006282 7.1e-101 371.3 359 60.2
Glyma.09G069700 Glycine max HOM05D002335 ORTHO05D006282 7.1e-101 371.3 347 60.5
MBI19_g16223_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006282 7.1e-101 371.3 338 61.5
Phvul.009G227200 Phaseolus vulgaris HOM05D002335 ORTHO05D006282 1.6e-100 370.2 341 60.4
THA.LOC104815334 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 2.1e-100 369.8 343 61.2
COL.COLO4_18096 Corchorus olitorius HOM05D002335 ORTHO05D006282 2.7e-100 369.4 347 62.0
MD15G1217700 Malus domestica HOM05D002335 ORTHO05D006282 2.7e-100 369.4 285 70.2
FAN26G1551 Fragaria x ananassa HOM05D002335 ORTHO05D006282 4.6e-100 368.6 348 61.2
Actinidia29935 Actinidia chinensis HOM05D002335 ORTHO05D006282 6.0e-100 368.2 342 62.3
AUR62028934 Chenopodium quinoa HOM05D002335 ORTHO05D006282 7.8e-100 367.9 340 61.5
MD02G1091400 Malus domestica HOM05D002335 ORTHO05D006282 1.0e-99 367.5 348 61.5
Sabra18G0052300 Salix brachista HOM05D002335 ORTHO05D006282 1.0e-99 367.5 300 66.7
FAN28G1803 Fragaria x ananassa HOM05D002335 ORTHO05D006282 1.7e-99 366.7 348 60.6
Lj6g0009960 Lotus japonicus HOM05D002335 ORTHO05D006282 1.7e-99 366.7 348 60.3
BcaB06g26879 Brassica carinata HOM05D002335 ORTHO05D006282 3.9e-99 365.5 325 63.1
Ca_02205_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006282 8.7e-99 364.4 347 59.9
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 1.5e-98 363.6 325 62.5
BcaC06g35950 Brassica carinata HOM05D002335 ORTHO05D006282 4.3e-98 362.1 325 62.5
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 4.3e-98 362.1 325 62.5
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 4.3e-98 362.1 325 62.5
PSO724G0129 Papaver somniferum HOM05D002335 ORTHO05D006282 7.3e-98 361.3 322 61.5
Lsat_1_v5_gn_8_86481 Lactuca sativa HOM05D002335 ORTHO05D006282 9.6e-98 360.9 345 59.1
Manes.03G040500 Manihot esculenta HOM05D002335 ORTHO05D006282 8.1e-97 357.8 346 59.8
Medtr2g041690 Medicago truncatula HOM05D002335 ORTHO05D006282 8.1e-97 357.8 347 58.5
ATR0598G025 Amborella trichopoda HOM05D002335 ORTHO05D006282 1.8e-96 356.7 345 57.4
HPP92_004364 Vanilla planifolia HOM05D002335 ORTHO05D006282 4.0e-96 355.5 340 57.9
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 9.0e-96 354.4 341 59.8
Carub.0003s2712 Capsella rubella HOM05D002335 ORTHO05D006282 1.5e-95 353.6 349 60.5
Eucgr.C03263 Eucalyptus grandis HOM05D002335 ORTHO05D006282 2.0e-95 353.2 309 64.4
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 2.0e-95 353.2 283 67.8
SalBow6G4624 Salvia bowleyana HOM05D002335 ORTHO05D006282 3.8e-94 349.0 342 61.7
Haze_26014 Corylus avellana HOM05D002335 ORTHO05D006282 4.9e-94 348.6 385 55.3
Thhalv10014003m.g Eutrema salsugineum HOM05D002335 ORTHO05D006282 6.4e-94 348.2 334 57.5
AL6G32120 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 1.1e-93 347.4 338 57.7
AL3G43580 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 7.1e-93 344.7 339 61.1
Carub.0006s1891 Capsella rubella HOM05D002335 ORTHO05D006282 1.6e-92 343.6 338 56.5
Hund26035 Selenicereus undatus HOM05D002335 ORTHO05D006282 1.6e-92 343.6 304 63.5
Sp6g23900 Schrenkiella parvula HOM05D002335 ORTHO05D006282 2.7e-92 342.8 339 56.9
Sp3g24570 Schrenkiella parvula HOM05D002335 ORTHO05D006282 4.6e-92 342.0 341 59.8
AT5G20580 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 6.0e-92 341.7 338 56.5
BraA03t10325Z Brassica rapa HOM05D002335 ORTHO05D006282 7.9e-92 341.3 334 56.6
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 1.0e-91 340.9 334 56.6
Nitab4.5_0009436g0040 Nicotiana tabacum HOM05D002335 ORTHO05D006282 6.6e-91 338.2 392 55.9
THA.LOC104799620 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 6.6e-91 338.2 328 58.5
Atru.chr7.1708 Acer truncatum HOM05D002335 ORTHO05D006282 8.7e-91 337.8 283 64.7
AUR62025250 Chenopodium quinoa HOM05D002335 ORTHO05D006282 1.1e-90 337.4 326 59.8
SGA_v2.0_scaffold308G48076 Striga asiatica HOM05D002335 ORTHO05D006282 9.6e-90 334.3 365 57.8
Cpa.g.sc28.33 Carica papaya HOM05D002335 ORTHO05D006282 5.3e-88 328.6 227 74.4
Zm00001eb256890 Zea mays HOM05D002335 ORTHO05D006282 2.0e-87 326.6 328 56.7
CAN.G404.48 Capsicum annuum HOM05D002335 ORTHO05D006282 3.4e-87 325.9 261 72.8
PGR044G1875 Punica granatum HOM05D002335 ORTHO05D006282 2.2e-86 323.2 296 61.8
QL11p000781 Quercus lobata HOM05D002335 ORTHO05D006282 6.0e-84 315.1 375 54.4
TWI63G1279 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 1.8e-80 303.5 346 54.3
CARHR192220 Cardamine hirsuta HOM05D002335 ORTHO05D006282 1.2e-79 300.8 294 58.5
Psat3g025000 Pisum sativum HOM05D002335 ORTHO05D006282 1.2e-79 300.8 228 67.5
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 1.7e-78 297.0 297 56.9
arahy.Tifrunner.gnm1.ann1.UHGN3W Arachis hypogaea HOM05D002335 ORTHO05D006282 8.4e-78 294.7 340 52.9
CARHR103630 Cardamine hirsuta HOM05D002335 ORTHO05D006282 1.1e-77 294.3 301 60.5
vmacro06343 Vaccinium macrocarpon HOM05D002335 ORTHO05D006282 4.2e-77 292.4 406 49.8
Peaxi162Scf00127g01814 Petunia axillaris HOM05D002335 ORTHO05D006282 2.3e-75 286.6 263 67.3
HPP92_004366 Vanilla planifolia HOM05D002335 ORTHO05D006282 1.5e-74 283.9 340 50.0
Rhsim03G0227400 Rhododendron simsii HOM05D002335 ORTHO05D005129 2.1e-73 280.0 385 48.8
AT2G06005 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 3.7e-73 279.3 283 60.1
SEGI_06962 Sequoiadendron giganteum HOM05D002335 ORTHO05D006282 1.1e-72 277.7 337 47.2
Psat1g134320 Pisum sativum HOM05D002335 ORTHO05D006282 2.0e-71 273.5 267 60.7
Aa31LG1G14100 Aethionema arabicum HOM05D002335 ORTHO05D006282 2.7e-68 263.1 440 41.1
Sc18g0002560 Simmondsia chinensis HOM05D002335 ORTHO05D006282 1.9e-66 256.9 202 70.8
arahy.Tifrunner.gnm1.ann1.3UYF95 Arachis hypogaea HOM05D002335 ORTHO05D006282 9.7e-66 254.6 223 60.1
Lalb_Chr23g0276371 Lupinus albus HOM05D002335 ORTHO05D006282 1.3e-65 254.2 206 62.6
SHI23809 Sapria himalayana HOM05D002335 ORTHO05D006282 1.0e-62 244.6 214 63.6
Lalb_Chr07g0181191 Lupinus albus HOM05D002335 ORTHO05D006282 1.7e-62 243.8 258 53.5
FAN23G1616 Fragaria x ananassa HOM05D002335 ORTHO05D006282 1.2e-55 221.1 240 57.1
CDE02G0868 Ceratophyllum demersum HOM05D002335 ORTHO05D006282 2.9e-54 216.5 222 57.7
Lj7C687T14 Lonicera japonica HOM05D002335 ORTHO05D006282 8.5e-54 214.9 259 53.3
Actinidia38482 Actinidia chinensis HOM05D002335 ORTHO05D006282 5.5e-53 212.2 137 75.9
Nitab4.5_0000343g0220 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.1e-50 204.5 129 80.6
Pp3c2_6470 Physcomitrium patens HOM05D002335 ORTHO05D006282 1.2e-47 194.5 340 36.5
MD02G1091600 Malus domestica HOM05D002335 ORTHO05D006282 3.8e-46 189.5 150 66.0
Pp3c22_13730 Physcomitrium patens HOM05D002335 ORTHO05D006282 3.8e-46 189.5 343 39.1
Mapoly0011s0025 Marchantia polymorpha HOM05D002335 ORTHO05D006282 4.2e-45 186.0 335 36.7
DCAR_028335 Daucus carota HOM05D002335 ORTHO05D006282 3.1e-40 169.9 194 56.2
Solyc07g041890.1 Solanum lycopersicum HOM05D002335 ORTHO05D006282 8.3e-33 145.2 183 51.9
SMO358G0254 Selaginella moellendorffii HOM05D002335 ORTHO05D006282 8.3e-25 118.6 196 41.8
Nitab4.5_0000343g0210 Nicotiana tabacum HOM05D002335 ORTHO05D006282 3.5e-23 113.2 102 67.6
Lalb_Chr23g0276381 Lupinus albus HOM05D002335 ORTHO05D006282 1.3e-22 111.3 137 52.6
Oeu011491.2 Olea europaea HOM05D002335 ORTHO05D006282 1.5e-21 107.8 78 70.5
AagrBONN_evm.TU.Sc2ySwM_344.5493 Anthoceros agrestis HOM05D002335 ORTHO05D006282 2.5e-21 107.1 299 30.4
Cpa.g.sc28.37 Carica papaya HOM05D002335 ORTHO05D006282 1.4e-19 101.3 112 55.4
Lalb_Chr07g0181181 Lupinus albus HOM05D002335 ORTHO05D006282 3.0e-19 100.1 161 45.3
arahy.Tifrunner.gnm1.ann1.HK8DFN Arachis hypogaea HOM05D002335 ORTHO05D006282 4.4e-18 96.3 99 48.5
CAN.G2458.1 Capsicum annuum HOM05D002335 ORTHO05D006282 1.9e-13 80.9 89 60.7
Oeu031390.1 Olea europaea HOM05D002335 ORTHO05D006282 5.6e-13 79.3 50 76.0
Medtr2g041390 Medicago truncatula HOM05D002335 ORTHO05D006282 8.0e-12 75.5 106 47.2
arahy.Tifrunner.gnm1.ann1.S4WZ34 Arachis hypogaea HOM05D000237 ORTHO05D017465 1.8e-11 74.3 54 57.4
Actinidia38481 Actinidia chinensis HOM05D002335 ORTHO05D006282 1.2e-10 71.6 115 47.8
Ah.14g084930 Amaranthus hybridus HOM05D002335 ORTHO05D006282 5.8e-10 69.3 80 53.8
arahy.Tifrunner.gnm1.ann1.WCUD5S Arachis hypogaea HOM05D000237 ORTHO05D017465 1.7e-09 67.8 53 56.6
arahy.Tifrunner.gnm1.ann1.Y6L4BT Arachis hypogaea HOM05D000237 ORTHO05D017465 4.9e-09 66.2 69 44.9
CBR_g26318 Chara braunii HOM05D002335 ORTHO05D006282 1.4e-08 64.7 196 30.1
arahy.Tifrunner.gnm1.ann1.9B3XF4 Arachis hypogaea HOM05D000237 ORTHO05D017465 1.2e-07 61.6 44 56.8


User provided reference genes

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