Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G166.15 Capsicum annuum HOM05D007103 ORTHO05D008948 3.7e-55 218.0 112 100.0
CAN.G458.2 Capsicum annuum HOM05D007103 ORTHO05D008948 9.7e-24 113.6 83 69.9
PGSC0003DMG400031375 Solanum tuberosum HOM05D007103 ORTHO05D008948 1.3e-23 113.2 83 69.9
Solyc04g008560.3 Solanum lycopersicum HOM05D007103 ORTHO05D008948 1.7e-23 112.8 83 68.7
Sopen04g003720 Solanum pennellii HOM05D007103 ORTHO05D008948 4.8e-23 111.3 83 67.5
Nitab4.5_0000129g0430 Nicotiana tabacum HOM05D007103 ORTHO05D008948 2.4e-22 109.0 83 67.5
Nitab4.5_0007973g0020 Nicotiana tabacum HOM05D007103 ORTHO05D008948 2.4e-22 109.0 83 67.5
Peaxi162Scf00329g00938 Petunia axillaris HOM05D007103 ORTHO05D008948 3.6e-18 95.1 76 65.8
Migut.E00576 Erythranthe guttata HOM05D007103 ORTHO05D008948 2.4e-14 82.4 84 50.0
CsaV3_5G017430 Cucumis sativus L. HOM05D007103 ORTHO05D008948 9.1e-14 80.5 91 47.3
MSTRG.2093 Avicennia marina HOM05D007103 ORTHO05D008948 1.2e-13 80.1 83 49.4
Ciclev10005118m.g Citrus clementina HOM05D007103 ORTHO05D008948 1.2e-13 80.1 86 51.2
MELO3C005211.2 Cucumis melo HOM05D007103 ORTHO05D008948 1.6e-13 79.7 91 47.3
Thecc.02G296200 Theobroma cacao HOM05D007103 ORTHO05D008948 2.7e-13 79.0 84 47.6
TWI74G0969 Tripterygium wilfordii HOM05D007103 ORTHO05D008948 2.2e-12 75.9 84 45.2
COL.COLO4_27515 Corchorus olitorius HOM05D007103 ORTHO05D008948 2.9e-12 75.5 84 48.8
Sed0022925 Sechium edule HOM05D007103 ORTHO05D008948 2.9e-12 75.5 91 45.1
DCAR_030327 Daucus carota HOM05D007103 ORTHO05D008948 3.8e-12 75.1 86 50.0
QL03p041867 Quercus lobata HOM05D007103 ORTHO05D008948 3.8e-12 75.1 86 48.8
HanXRQChr14g0446891 Helianthus annuus HOM05D007103 ORTHO05D008948 5.0e-12 74.7 84 48.8
TAR371G1171 Trochodendron aralioides HOM05D007103 ORTHO05D008948 5.0e-12 74.7 86 48.8
Lj3A854G74 Lonicera japonica HOM05D007103 ORTHO05D008948 1.5e-11 73.2 104 40.4
CSS0049146 Camellia sinensis var. sinensis HOM05D007103 ORTHO05D008948 5.5e-11 71.2 86 45.3
ECA246G2851 Erigeron canadensis HOM05D007103 ORTHO05D008948 5.5e-11 71.2 91 46.2
Prupe.1G342500 Prunus persica HOM05D007103 ORTHO05D008948 5.5e-11 71.2 92 47.8
Gohir.A01G145152 Gossypium hirsutum HOM05D007103 ORTHO05D008948 7.2e-11 70.9 84 46.4
Actinidia31381 Actinidia chinensis HOM05D007103 ORTHO05D008948 9.4e-11 70.5 81 46.9
Gorai.002G168100 Gossypium raimondii HOM05D007103 ORTHO05D008948 2.1e-10 69.3 83 44.6
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 2.1e-10 69.3 85 47.1
Manes.10G065901 Manihot esculenta HOM05D007103 ORTHO05D008948 2.1e-10 69.3 83 42.2
GSVIVG01010248001 Vitis vinifera HOM05D007103 ORTHO05D008948 3.6e-10 68.6 85 44.7
Gohir.D01G137900 Gossypium hirsutum HOM05D007103 ORTHO05D008948 4.7e-10 68.2 83 43.4
Eucgr.B02623 Eucalyptus grandis HOM05D007103 ORTHO05D008948 6.1e-10 67.8 85 43.5
Rhsim04G0168800 Rhododendron simsii HOM05D007103 ORTHO05D008948 1.0e-09 67.0 82 43.9
Haze_01571 Corylus avellana HOM05D007103 ORTHO05D008948 1.4e-09 66.6 91 41.8
Lsat_1_v5_gn_3_27560 Lactuca sativa HOM05D007103 ORTHO05D008948 1.4e-09 66.6 77 45.5
Carub.0005s0121 Capsella rubella HOM05D007103 ORTHO05D008948 1.8e-09 66.2 102 38.2
PGR044G1063 Punica granatum HOM05D007103 ORTHO05D008948 1.8e-09 66.2 91 44.0
ClCG01G007020 Citrullus lanatus HOM05D007103 ORTHO05D008948 2.3e-09 65.9 68 48.5
arahy.Tifrunner.gnm1.ann1.U7H2Z0 Arachis hypogaea HOM05D007103 ORTHO05D008948 3.0e-09 65.5 91 42.9
MD13G1010500 Malus domestica HOM05D007103 ORTHO05D008948 3.0e-09 65.5 94 42.6
Nn3g18722 Nelumbo nucifera HOM05D007103 ORTHO05D008948 3.0e-09 65.5 81 44.4
arahy.Tifrunner.gnm1.ann1.CDY64E Arachis hypogaea HOM05D007103 ORTHO05D008948 5.2e-09 64.7 91 42.9
Lalb_Chr13g0293061 Lupinus albus HOM05D007103 ORTHO05D008948 5.2e-09 64.7 84 47.6
Potri.008G143700 Populus trichocarpa HOM05D007103 ORTHO05D008948 5.2e-09 64.7 82 41.5
vmacro08589 Vaccinium macrocarpon HOM05D007103 ORTHO05D008948 5.2e-09 64.7 68 48.5
Sp2g13560 Schrenkiella parvula HOM05D007103 ORTHO05D008948 8.8e-09 63.9 87 41.4
Cfa015108 Carpinus fangiana HOM05D007103 ORTHO05D008948 1.2e-08 63.5 93 38.7
RcHm_v2.0_Chr4g0446051 Rosa chinensis HOM05D007103 ORTHO05D008948 1.2e-08 63.5 86 44.2
AL5G11410 Arabidopsis lyrata HOM05D007103 ORTHO05D008948 2.0e-08 62.8 102 37.3
CARHR144820 Cardamine hirsuta HOM05D007103 ORTHO05D008948 2.0e-08 62.8 89 43.8
PSO478G2004 Papaver somniferum HOM05D007103 ORTHO05D008948 2.0e-08 62.8 85 45.9
Thhalv10004194m.g Eutrema salsugineum HOM05D007103 ORTHO05D008948 2.6e-08 62.4 91 39.6
Sabra08G0108900 Salix brachista HOM05D007103 ORTHO05D008948 2.6e-08 62.4 82 41.5
Actinidia25204 Actinidia chinensis HOM05D007103 ORTHO05D008948 3.4e-08 62.0 68 47.1
Glyma.05G135400 Glycine max HOM05D007103 ORTHO05D008948 4.4e-08 61.6 84 42.9
SGA_v2.0_scaffold127G33990 Striga asiatica HOM05D007103 ORTHO05D008948 4.4e-08 61.6 63 49.2
Ca_18212_v3 Cicer arietinum L. HOM05D007103 ORTHO05D008948 5.7e-08 61.2 83 41.0
THA.LOC104805941 Tarenaya hassleriana HOM05D007103 ORTHO05D008948 7.5e-08 60.8 85 38.8
unitig_8.g4025 Utricularia gibba HOM05D007103 ORTHO05D008948 7.5e-08 60.8 89 40.4
Lj4g0001083 Lotus japonicus HOM05D007103 ORTHO05D008948 1.3e-07 60.1 86 43.0
Psat7g086680 Pisum sativum HOM05D007103 ORTHO05D008948 1.7e-07 59.7 86 41.9
CDE08G0078 Ceratophyllum demersum HOM05D007103 ORTHO05D008948 2.8e-07 58.9 84 42.9
Aa31LG2G7810 Aethionema arabicum HOM05D007103 ORTHO05D008948 4.8e-07 58.2 87 40.2
AT2G02148 Arabidopsis thaliana HOM05D007103 ORTHO05D008948 4.8e-07 58.2 99 36.4
C09p30690 Brassica napus HOM05D007103 ORTHO05D008948 1.4e-06 56.6 102 37.3
Aqoxy3G00022 Aquilegia oxysepala HOM05D007103 ORTHO05D008948 2.4e-06 55.8 84 39.3
BraA09t37988Z Brassica rapa HOM05D007103 ORTHO05D008948 3.1e-06 55.5 97 34.0
SEGI_34932 Sequoiadendron giganteum HOM05D007103 ORTHO05D008948 3.1e-06 55.5 91 37.4
PSO017G4620 Papaver somniferum HOM05D007103 ORTHO05D008948 4.1e-06 55.1 79 44.3
BolC9t55934H Brassica oleracea HOM05D007103 ORTHO05D008948 5.4e-06 54.7 99 32.3
A09p23820 Brassica napus HOM05D007103 ORTHO05D008948 9.1e-06 53.9 99 32.3


User provided reference genes

Program Settings