Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 1.4e-69 266.2 131 100.0
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 1.3e-64 249.6 131 90.8
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 1.5e-63 246.1 131 90.1
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 3.3e-63 245.0 131 90.8
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 4.1e-58 228.0 126 85.7
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.3e-56 223.0 127 83.5
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 3.9e-56 221.5 128 79.7
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 1.6e-54 216.1 130 80.0
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 2.8e-54 215.3 129 77.5
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 2.8e-54 215.3 129 77.5
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 4.7e-54 214.5 123 83.7
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 8.1e-54 213.8 124 80.6
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 1.8e-53 212.6 130 75.4
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 2.3e-53 212.2 128 78.9
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 2.3e-53 212.2 128 78.9
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 3.1e-53 211.8 129 79.1
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 6.8e-53 210.7 129 79.1
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 1.5e-52 209.5 130 73.8
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 1.5e-52 209.5 129 78.3
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 1.5e-52 209.5 130 75.4
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 2.0e-52 209.1 129 77.5
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 2.6e-52 208.8 127 78.0
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 5.8e-52 207.6 130 73.8
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 5.8e-52 207.6 128 74.2
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 7.6e-52 207.2 129 77.5
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 7.6e-52 207.2 125 74.4
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 9.9e-52 206.8 128 77.3
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 1.3e-51 206.5 126 77.8
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 1.7e-51 206.1 127 75.6
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.2e-51 205.7 129 77.5
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 2.2e-51 205.7 129 77.5
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 2.9e-51 205.3 128 74.2
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 3.7e-51 204.9 129 75.2
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 4.9e-51 204.5 124 75.8
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 6.4e-51 204.1 130 76.2
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 8.4e-51 203.8 126 77.0
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.1e-50 203.4 129 74.4
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 1.1e-50 203.4 122 77.9
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 1.9e-50 202.6 130 75.4
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 3.2e-50 201.8 126 75.4
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 4.1e-50 201.4 122 76.2
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 5.4e-50 201.1 126 76.2
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 7.1e-50 200.7 131 71.0
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 7.1e-50 200.7 123 79.7
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 7.1e-50 200.7 124 75.0
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 7.1e-50 200.7 126 76.2
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 7.1e-50 200.7 126 76.2
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 9.2e-50 200.3 126 75.4
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 9.2e-50 200.3 129 73.6
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.6e-49 199.5 119 78.2
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 1.6e-49 199.5 121 75.2
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 2.1e-49 199.1 123 79.7
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 2.1e-49 199.1 123 75.6
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 3.5e-49 198.4 122 76.2
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 3.5e-49 198.4 140 67.9
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 4.6e-49 198.0 122 76.2
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 6.0e-49 197.6 126 75.4
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 7.8e-49 197.2 121 79.3
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.3e-48 195.7 126 74.6
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 3.9e-48 194.9 125 74.4
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 3.9e-48 194.9 120 78.3
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 3.9e-48 194.9 119 78.2
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 8.6e-48 193.7 123 73.2
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 1.9e-47 192.6 126 75.4
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 1.2e-46 189.9 128 68.8
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.2e-46 189.9 118 75.4
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 1.6e-46 189.5 127 71.7
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 3.6e-46 188.3 127 73.2
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 8.1e-46 187.2 131 69.5
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 8.1e-46 187.2 125 72.0
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 1.8e-45 186.0 125 70.4
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 6.8e-45 184.1 119 72.3
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 1.2e-44 183.3 126 65.9
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 2.0e-44 182.6 120 70.8
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 2.0e-44 182.6 119 71.4
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 2.0e-44 182.6 118 71.2
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 4.4e-44 181.4 120 70.8
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 5.8e-44 181.0 120 71.7
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 5.8e-44 181.0 123 70.7
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 7.6e-44 180.6 121 74.4
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 1.7e-43 179.5 113 73.5
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 3.8e-43 178.3 120 69.2
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.4e-42 176.4 101 77.2
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.4e-42 176.4 101 77.2
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 1.4e-42 176.4 126 70.6
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 1.4e-42 176.4 120 70.0
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.9e-42 176.0 108 78.7
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 3.2e-42 175.3 121 67.8
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 4.2e-42 174.9 126 63.5
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 9.3e-42 173.7 123 63.4
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 9.3e-42 173.7 121 68.6
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 9.3e-42 173.7 124 63.7
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 1.6e-41 172.9 124 62.9
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 2.7e-41 172.2 120 69.2
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 2.7e-41 172.2 120 68.3
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 3.5e-41 171.8 118 68.6
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 3.5e-41 171.8 126 62.7
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 6.0e-41 171.0 123 64.2
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 2.3e-40 169.1 121 63.6
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.3e-40 169.1 107 75.7
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 3.0e-40 168.7 126 65.1
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 3.0e-40 168.7 123 63.4
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 3.9e-40 168.3 126 64.3
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 5.1e-40 167.9 120 66.7
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 6.6e-40 167.5 112 73.2
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 8.7e-40 167.2 120 69.2
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 8.7e-40 167.2 113 69.9
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 1.5e-39 166.4 126 64.3
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 1.5e-39 166.4 126 62.7
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 1.5e-39 166.4 118 65.3
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 1.5e-39 166.4 119 64.7
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 2.5e-39 165.6 120 65.8
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 4.3e-39 164.9 120 60.8
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 4.3e-39 164.9 120 63.3
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 9.6e-39 163.7 119 63.9
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 1.3e-38 163.3 120 65.8
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 2.1e-38 162.5 120 64.2
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 1.1e-37 160.2 108 64.8
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 1.1e-37 160.2 120 62.5
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 3.1e-37 158.7 118 62.7
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.5e-36 156.4 127 57.5
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 1.5e-36 156.4 119 62.2
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 2.0e-36 156.0 119 62.2
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 2.6e-36 155.6 119 62.2
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 4.4e-36 154.8 125 59.2
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 4.4e-36 154.8 126 62.7
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 9.9e-36 153.7 121 60.3
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.7e-35 152.9 127 55.9
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 1.7e-35 152.9 123 58.5
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 1.7e-35 152.9 123 58.5
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 1.7e-35 152.9 123 58.5
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 1.7e-35 152.9 120 59.2
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 6.4e-35 151.0 121 59.5
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 3.2e-34 148.7 123 58.5
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 4.2e-34 148.3 139 55.4
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 5.4e-34 147.9 119 57.1
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 7.1e-34 147.5 120 58.3
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 9.3e-34 147.1 122 59.8
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 2.1e-33 146.0 118 59.3
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 2.1e-33 146.0 118 59.3
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 2.1e-33 146.0 124 51.6
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 2.7e-33 145.6 118 60.2
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 6.0e-33 144.4 120 58.3
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.0e-32 143.7 99 68.7
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 1.3e-32 143.3 118 59.3
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 3.9e-32 141.7 123 56.1
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 3.9e-32 141.7 123 56.1
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 3.9e-32 141.7 119 55.5
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 5.1e-32 141.4 120 55.0
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 6.6e-32 141.0 121 61.2
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.9e-31 139.4 120 55.8
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 3.3e-31 138.7 120 56.7
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 7.4e-31 137.5 123 53.7
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 9.6e-31 137.1 122 54.1
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 2.1e-30 136.0 120 57.5
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 6.9e-29 131.0 116 56.0
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 4.5e-28 128.3 119 50.4
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 7.1e-26 120.9 100 59.0
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 2.5e-23 112.5 63 81.0
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.6e-22 109.8 82 73.2
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 6.2e-22 107.8 62 77.4
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.8e-21 106.3 65 76.9
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 4.0e-21 105.1 64 76.6
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 4.0e-21 105.1 64 76.6
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 8.4e-19 97.4 65 76.9
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 1.9e-18 96.3 69 73.9
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 2.5e-18 95.9 62 77.4
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 3.2e-18 95.5 53 75.5
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 6.7e-16 87.8 112 40.2
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 4.3e-15 85.1 121 38.8
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.6e-14 83.2 53 73.6
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 2.8e-14 82.4 64 65.6
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 3.7e-14 82.0 51 78.4
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.1e-13 80.5 62 54.8
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 1.2e-12 77.0 59 62.7
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 7.6e-12 74.3 68 55.9
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.3e-08 63.5 64 46.9
Nitab4.5_0006280g0090 Nicotiana tabacum HOM05D003887 ORTHO05D048295 1.8e-08 63.2 38 76.3


User provided reference genes

Program Settings