Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G165.5 Capsicum annuum HOM05D004398 ORTHO05D005268 7.7e-61 236.9 114 100.0
CAN.G199.38 Capsicum annuum HOM05D004398 ORTHO05D005268 3.2e-46 188.3 98 90.8
Solyc06g065570.3 Solanum lycopersicum HOM05D004398 ORTHO05D005268 1.9e-43 179.1 98 85.7
Sopen06g024110 Solanum pennellii HOM05D004398 ORTHO05D005268 1.9e-43 179.1 98 85.7
PGSC0003DMG400026128 Solanum tuberosum HOM05D004398 ORTHO05D005268 2.5e-43 178.7 98 86.7
Eucgr.C01806 Eucalyptus grandis HOM05D004398 ORTHO05D005268 2.3e-41 172.2 97 81.4
Peaxi162Scf01343g00154 Petunia axillaris HOM05D004398 ORTHO05D005268 6.8e-41 170.6 115 73.9
Manes.16G118300 Manihot esculenta HOM05D004398 ORTHO05D005268 3.4e-40 168.3 97 79.4
Nitab4.5_0007227g0020 Nicotiana tabacum HOM05D004398 ORTHO05D005268 4.4e-40 167.9 98 80.6
Ciclev10009736m.g Citrus clementina HOM05D004398 ORTHO05D005268 7.5e-40 167.2 97 78.4
Nitab4.5_0002000g0050 Nicotiana tabacum HOM05D004398 ORTHO05D005268 9.8e-40 166.8 98 80.6
Potri.006G248900 Populus trichocarpa HOM05D004398 ORTHO05D005268 1.3e-39 166.4 97 78.4
Thecc.09G147500 Theobroma cacao HOM05D004398 ORTHO05D005268 1.3e-39 166.4 97 78.4
Medtr5g098790 Medicago truncatula HOM05D004398 ORTHO05D005268 1.7e-39 166.0 97 76.3
BcaB08g37069 Brassica carinata HOM05D004398 ORTHO05D005268 2.2e-39 165.6 97 77.3
Manes.03G018300 Manihot esculenta HOM05D004398 ORTHO05D005268 2.2e-39 165.6 97 77.3
Nitab4.5_0002339g0050 Nicotiana tabacum HOM05D004398 ORTHO05D005268 2.2e-39 165.6 97 77.3
BcaNung01922 Brassica carinata HOM05D004398 ORTHO05D005268 2.9e-39 165.2 97 76.3
Cpa.g.sc91.31 Carica papaya HOM05D004398 ORTHO05D005268 2.9e-39 165.2 97 77.3
PGR031G0419 Punica granatum HOM05D004398 ORTHO05D005268 2.9e-39 165.2 97 78.4
Gohir.D03G064300 Gossypium hirsutum HOM05D004398 ORTHO05D005268 3.7e-39 164.9 97 77.3
Oeu032496.1 Olea europaea HOM05D004398 ORTHO05D005268 4.9e-39 164.5 97 77.3
Sabra06G0194700 Salix brachista HOM05D004398 ORTHO05D005268 4.9e-39 164.5 97 78.4
C09p65530 Brassica napus HOM05D004398 ORTHO05D005268 6.4e-39 164.1 97 76.3
Carub.0006s0980 Capsella rubella HOM05D004398 ORTHO05D005268 6.4e-39 164.1 97 76.3
Cfa013194 Carpinus fangiana HOM05D004398 ORTHO05D005268 6.4e-39 164.1 97 76.3
Thhalv10014874m.g Eutrema salsugineum HOM05D004398 ORTHO05D005268 6.4e-39 164.1 97 76.3
Sp6g32240 Schrenkiella parvula HOM05D004398 ORTHO05D005268 6.4e-39 164.1 97 76.3
GSVIVG01035773001 Vitis vinifera HOM05D004398 ORTHO05D005268 6.4e-39 164.1 97 76.3
Aa31LG3G15850 Aethionema arabicum HOM05D004398 ORTHO05D005268 8.3e-39 163.7 97 76.3
BcaC04g19238 Brassica carinata HOM05D004398 ORTHO05D005268 8.3e-39 163.7 97 76.3
COL.COLO4_24002 Corchorus olitorius HOM05D004398 ORTHO05D005268 8.3e-39 163.7 97 77.3
Duzib150G1379 Durio zibethinus HOM05D004398 ORTHO05D005268 8.3e-39 163.7 97 76.3
Glyma.02G309600 Glycine max HOM05D004398 ORTHO05D005268 8.3e-39 163.7 98 76.5
Gohir.A04G025100 Gossypium hirsutum HOM05D004398 ORTHO05D005268 8.3e-39 163.7 97 77.3
Nitab4.5_0000508g0250 Nicotiana tabacum HOM05D004398 ORTHO05D005268 8.3e-39 163.7 97 76.3
Lj1g0014596 Lotus japonicus HOM05D004398 ORTHO05D005268 1.1e-38 163.3 98 76.5
Potri.018G032400 Populus trichocarpa HOM05D004398 ORTHO05D005268 1.1e-38 163.3 97 77.3
MSTRG.13991 Avicennia marina HOM05D004398 ORTHO05D005268 1.4e-38 162.9 97 77.3
CSS0033658 Camellia sinensis var. sinensis HOM05D004398 ORTHO05D005268 1.4e-38 162.9 97 76.3
Glyma.14G003300 Glycine max HOM05D004398 ORTHO05D005268 1.4e-38 162.9 98 76.5
Gohir.D08G102900 Gossypium hirsutum HOM05D004398 ORTHO05D005268 1.4e-38 162.9 97 76.3
Gorai.004G110900 Gossypium raimondii HOM05D004398 ORTHO05D005268 1.4e-38 162.9 97 76.3
Lalb_Chr17g0349351 Lupinus albus HOM05D004398 ORTHO05D005268 1.4e-38 162.9 98 76.5
TAR636G1605 Trochodendron aralioides HOM05D002580 ORTHO05D005268 1.4e-38 162.9 97 78.4
AL6G21990 Arabidopsis lyrata HOM05D004398 ORTHO05D005268 1.9e-38 162.5 97 75.3
A10p26390 Brassica napus HOM05D004398 ORTHO05D005268 1.9e-38 162.5 97 75.3
BolC9t59376H Brassica oleracea HOM05D004398 ORTHO05D005268 1.9e-38 162.5 97 76.3
BraA10t44696Z Brassica rapa HOM05D004398 ORTHO05D005268 1.9e-38 162.5 97 75.3
CiPaw.07G219500 Carya illinoinensis HOM05D004398 ORTHO05D005268 1.9e-38 162.5 97 76.3
Gohir.A08G090062 Gossypium hirsutum HOM05D004398 ORTHO05D005268 1.9e-38 162.5 97 76.3
MD15G1118400 Malus domestica HOM05D004398 ORTHO05D005268 1.9e-38 162.5 97 77.3
QL12p031735 Quercus lobata HOM05D004398 ORTHO05D005268 2.4e-38 162.2 97 76.3
Gohir.A04G025400 Gossypium hirsutum HOM05D004398 ORTHO05D005268 3.2e-38 161.8 97 76.3
Psat2g001840 Pisum sativum HOM05D004398 ORTHO05D005268 3.2e-38 161.8 98 76.5
Ca_06490_v3 Cicer arietinum L. HOM05D004398 ORTHO05D005268 4.1e-38 161.4 98 76.5
Dinv30193 Davidia involucrata HOM05D004398 ORTHO05D004293 4.1e-38 161.4 97 76.3
Phvul.008G289800 Phaseolus vulgaris HOM05D004398 ORTHO05D005268 4.1e-38 161.4 98 75.5
TAR625G0264 Trochodendron aralioides HOM05D004398 ORTHO05D005268 4.1e-38 161.4 97 78.4
VMungo0647G1556 Vigna mungo HOM05D004398 ORTHO05D005268 4.1e-38 161.4 98 75.5
MSTRG.25860 Avicennia marina HOM05D004398 ORTHO05D005268 5.4e-38 161.0 97 75.3
CDE01G0001 Ceratophyllum demersum HOM05D004398 ORTHO05D005268 5.4e-38 161.0 97 75.3
TPR.G35885 Trifolium pratense HOM05D004398 ORTHO05D005268 9.2e-38 160.2 98 75.5
Aqoxy7G01991 Aquilegia oxysepala HOM05D004398 ORTHO05D005268 1.2e-37 159.8 97 75.3
EL10Ac2g02565 Beta vulgaris HOM05D004398 ORTHO05D005268 1.2e-37 159.8 97 74.2
Prupe.1G471800 Prunus persica HOM05D004398 ORTHO05D005268 1.2e-37 159.8 97 76.3
CDE02G1057 Ceratophyllum demersum HOM05D004398 ORTHO05D005268 1.6e-37 159.5 97 75.3
ClCG08G013040 Citrullus lanatus HOM05D004398 ORTHO05D005268 1.6e-37 159.5 97 75.3
MELO3C011228.2 Cucumis melo HOM05D004398 ORTHO05D005268 1.6e-37 159.5 97 75.3
HanXRQChr13g0402451 Helianthus annuus HOM05D004398 ORTHO05D005268 2.1e-37 159.1 97 75.3
Sc09g0008690 Simmondsia chinensis HOM05D004398 ORTHO05D005268 2.1e-37 159.1 97 74.2
Actinidia20317 Actinidia chinensis HOM05D004398 ORTHO05D005268 2.7e-37 158.7 97 73.2
Duzib187G0288 Durio zibethinus HOM05D004398 ORTHO05D005268 2.7e-37 158.7 97 74.2
Rhsim07G0150800 Rhododendron simsii HOM05D004398 ORTHO05D005268 2.7e-37 158.7 97 74.2
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 3.5e-37 158.3 90 83.3
TWI34G0493 Tripterygium wilfordii HOM05D004398 ORTHO05D005268 3.5e-37 158.3 97 73.2
HPP92_024601 Vanilla planifolia HOM05D004398 ORTHO05D005268 3.5e-37 158.3 97 73.2
Lsat_1_v5_gn_6_21660 Lactuca sativa HOM05D004398 ORTHO05D005268 4.6e-37 157.9 97 75.3
AT5G11340 Arabidopsis thaliana HOM05D004398 ORTHO05D005268 6.0e-37 157.5 97 73.2
RcHm_v2.0_Chr6g0298801 Rosa chinensis HOM05D004398 ORTHO05D005268 6.0e-37 157.5 97 73.2
Sed0003647 Sechium edule HOM05D004398 ORTHO05D005268 6.0e-37 157.5 97 74.2
THA.LOC104815033 Tarenaya hassleriana HOM05D004398 ORTHO05D005268 6.0e-37 157.5 97 73.2
TWI63G1039 Tripterygium wilfordii HOM05D004398 ORTHO05D005268 7.8e-37 157.1 97 73.2
Zm00001eb161820 Zea mays HOM05D004398 ORTHO05D005268 1.0e-36 156.8 97 75.3
Hund03009 Selenicereus undatus HOM05D004398 ORTHO05D005268 1.3e-36 156.4 97 72.2
Lj8A616G45 Lonicera japonica HOM05D004398 ORTHO05D005268 1.7e-36 156.0 97 73.2
Nn8g39345 Nelumbo nucifera HOM05D004398 ORTHO05D005268 1.7e-36 156.0 97 75.3
Lj7A716G42 Lonicera japonica HOM05D004398 ORTHO05D005268 3.0e-36 155.2 98 74.5
Solyc08g067440.2 Solanum lycopersicum HOM05D004398 ORTHO05D005268 3.0e-36 155.2 97 76.3
Nn2g11907 Nelumbo nucifera HOM05D004398 ORTHO05D005268 3.9e-36 154.8 97 74.2
unitig_747.g21389 Utricularia gibba HOM05D001746 ORTHO05D001823 3.9e-36 154.8 97 72.2
BcaC03g13363 Brassica carinata HOM05D004398 ORTHO05D005268 6.6e-36 154.1 97 73.2
C02p04990 Brassica napus HOM05D004398 ORTHO05D005268 6.6e-36 154.1 97 73.2
BolC2t06455H Brassica oleracea HOM05D004398 ORTHO05D005268 6.6e-36 154.1 97 73.2
ECA233G2050 Erigeron canadensis HOM05D004398 ORTHO05D005268 8.6e-36 153.7 97 71.1
FAN15G0393 Fragaria x ananassa HOM05D004398 ORTHO05D005268 8.6e-36 153.7 97 72.2
SGA_v2.0_scaffold169G38624 Striga asiatica HOM05D004398 ORTHO05D005268 8.6e-36 153.7 97 72.2
arahy.Tifrunner.gnm1.ann1.P67EX8 Arachis hypogaea HOM05D004398 ORTHO05D005268 1.5e-35 152.9 112 67.0
Sopen08g021370 Solanum pennellii HOM05D004398 ORTHO05D005268 1.5e-35 152.9 97 75.3
A02p00960 Brassica napus HOM05D004398 ORTHO05D005268 1.9e-35 152.5 97 72.2
BraA02t05080Z Brassica rapa HOM05D004398 ORTHO05D005268 2.5e-35 152.1 97 72.2
AUR62032353 Chenopodium quinoa HOM05D004398 ORTHO05D005268 2.5e-35 152.1 97 71.1
FAN24G0064 Fragaria x ananassa HOM05D004398 ORTHO05D005268 2.5e-35 152.1 97 71.1
HanXRQChr02g0050671 Helianthus annuus HOM05D004398 ORTHO05D005268 2.5e-35 152.1 97 72.2
HanXRQChr02g0050691 Helianthus annuus HOM05D004398 ORTHO05D005268 2.5e-35 152.1 97 72.2
HanXRQChr02g0050741 Helianthus annuus HOM05D004398 ORTHO05D005268 2.5e-35 152.1 97 72.2
AUR62041848 Chenopodium quinoa HOM05D004398 ORTHO05D005268 3.3e-35 151.8 97 70.1
FAN27G0432 Fragaria x ananassa HOM05D004398 ORTHO05D005268 3.3e-35 151.8 97 71.1
SEGI_22963 Sequoiadendron giganteum HOM05D004398 ORTHO05D005268 3.3e-35 151.8 98 73.5
Os01g0610400 Oryza sativa ssp. japonica HOM05D004398 ORTHO05D005268 4.3e-35 151.4 97 72.2
Cc11_g01650 Coffea canephora HOM05D004398 ORTHO05D005268 5.6e-35 151.0 97 72.2
Peaxi162Scf00251g01121 Petunia axillaris HOM05D004398 ORTHO05D005268 5.6e-35 151.0 97 72.2
ATR0618G325 Amborella trichopoda HOM05D004398 ORTHO05D005268 9.5e-35 150.2 98 70.4
PSO170G5542 Papaver somniferum HOM05D004398 ORTHO05D005268 9.5e-35 150.2 97 71.1
Sed0007380 Sechium edule HOM05D004398 ORTHO05D005268 9.5e-35 150.2 97 72.2
THA.LOC104799227 Tarenaya hassleriana HOM05D004398 ORTHO05D005268 9.5e-35 150.2 97 69.1
PSO017G1065 Papaver somniferum HOM05D004398 ORTHO05D005268 1.2e-34 149.8 97 70.1
SalBow8G2141 Salvia bowleyana HOM05D004398 ORTHO05D005268 2.3e-33 145.6 102 69.6
SalBow8G2197 Salvia bowleyana HOM05D004398 ORTHO05D005268 2.3e-33 145.6 102 69.6
CAN.G211.13 Capsicum annuum HOM05D004398 ORTHO05D005268 1.2e-32 143.3 97 71.1
CANSAT54G1009 Cannabis sativa HOM05D004398 ORTHO05D005268 4.4e-32 141.4 102 67.6
CANSAT54G1633 Cannabis sativa HOM05D004398 ORTHO05D005268 4.4e-32 141.4 102 67.6
CANSAT54G2276 Cannabis sativa HOM05D004398 ORTHO05D005268 4.4e-32 141.4 102 67.6
Hund25700 Selenicereus undatus HOM05D004398 ORTHO05D005268 1.3e-31 139.8 97 71.1
vmacro05207 Vaccinium macrocarpon HOM05D004398 ORTHO05D005268 2.9e-31 138.7 137 51.8
Pp3c13_8050 Physcomitrium patens HOM05D004398 ORTHO05D005268 1.4e-30 136.3 100 63.0
Gohir.A02G109708 Gossypium hirsutum HOM05D004398 ORTHO05D005268 9.2e-30 133.7 82 75.6
SMO114G0115 Selaginella moellendorffii HOM05D004398 ORTHO05D005268 1.7e-28 129.4 97 64.9
AagrBONN_evm.TU.Sc2ySwM_228.5405 Anthoceros agrestis HOM05D004398 ORTHO05D005268 2.3e-28 129.0 98 63.3
Mapoly0023s0029 Marchantia polymorpha HOM05D004398 ORTHO05D005268 8.6e-28 127.1 99 61.6
CARHR201920 Cardamine hirsuta HOM05D004398 ORTHO05D005268 1.1e-27 126.7 74 77.0
SHI54407 Sapria himalayana HOM05D004398 ORTHO05D005268 1.1e-27 126.7 98 62.2
DCAR_022890 Daucus carota HOM05D004398 ORTHO05D005268 1.9e-27 125.9 100 62.0
Gohir.A04G025500 Gossypium hirsutum HOM05D004398 ORTHO05D005268 5.6e-27 124.4 72 77.8
SHI54562 Sapria himalayana HOM05D004398 ORTHO05D005268 1.6e-26 122.9 98 60.2
CsaV3_2G031770 Cucumis sativus L. HOM05D004398 ORTHO05D005268 2.1e-26 122.5 74 75.7
Atru.chr7.2357 Acer truncatum HOM05D004398 ORTHO05D005268 2.8e-26 122.1 78 70.5
Gohir.A04G025200 Gossypium hirsutum HOM05D004398 ORTHO05D005268 1.8e-25 119.4 72 76.4
Actinidia13266 Actinidia chinensis HOM05D004398 ORTHO05D005268 4.0e-25 118.2 71 74.6
vmacro05203 Vaccinium macrocarpon HOM05D004398 ORTHO05D005268 6.9e-25 117.5 185 37.8
Migut.E01484 Erythranthe guttata HOM05D004398 ORTHO05D005268 2.7e-21 105.5 65 75.4
SMO356G0009 Selaginella moellendorffii HOM05D004398 ORTHO05D005268 6.6e-20 100.9 97 51.5
PRCOL_00002723 Prasinoderma coloniale HOM05D004398 ORTHO05D005268 3.6e-18 95.1 97 48.5
Haze_26917 Corylus avellana HOM05D004398 ORTHO05D005268 1.1e-17 93.6 97 44.3
Haze_21593 Corylus avellana HOM05D004398 ORTHO05D005268 4.0e-17 91.7 64 68.8
Cre02.g101850 Chlamydomonas reinhardtii HOM05D004398 ORTHO05D005268 4.5e-16 88.2 99 42.4
CBR_g51562 Chara braunii HOM05D004398 ORTHO05D005268 1.9e-14 82.8 65 60.0
MCO16G331 Micromonas commoda HOM05D004398 ORTHO05D005268 5.4e-14 81.3 101 44.6
PGSC0003DMG400008977 Solanum tuberosum HOM05D004398 ORTHO05D005268 4.6e-13 78.2 39 92.3
C02p05180 Brassica napus HOM05D004398 ORTHO05D005268 2.5e-11 72.4 44 77.3
MD08G1142000 Malus domestica HOM05D004398 ORTHO05D005268 9.6e-11 70.5 38 86.8
Gorai.013G110600 Gossypium raimondii HOM05D004398 ORTHO05D005268 2.8e-10 68.9 38 81.6
FvH4_2g29780 Fragaria vesca HOM05D004398 ORTHO05D005268 1.1e-09 67.0 97 39.2
PGSC0003DMG400007371 Solanum tuberosum HOM05D004398 ORTHO05D005268 1.4e-09 66.6 38 84.2
Nitab4.5_0001780g0060 Nicotiana tabacum HOM05D004398 ORTHO05D005268 4.0e-09 65.1 38 76.3
Actinidia15699 Actinidia chinensis HOM05D003491 ORTHO05D004293 6.9e-09 64.3 61 52.5
Glyma.14G123400 Glycine max HOM05D004398 ORTHO05D005268 6.9e-09 64.3 47 63.8
Lalb_Chr04g0247061 Lupinus albus HOM05D004398 ORTHO05D005268 3.2e-06 55.5 65 44.6
Lalb_Chr04g0247051 Lupinus albus HOM05D004398 ORTHO05D005268 5.5e-06 54.7 32 65.6


User provided reference genes

Program Settings