Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1648.17 Capsicum annuum HOM05D001966 ORTHO05D007227 2.8e-94 348.6 172 100.0
CAN.G593.3 Capsicum annuum HOM05D001966 ORTHO05D004271 3.1e-61 238.8 125 93.6
CAN.G386.21 Capsicum annuum HOM05D001966 ORTHO05D010055 4.3e-39 165.2 86 90.7
Lsat_1_v5_gn_2_20521 Lactuca sativa HOM05D001966 ORTHO05D007227 8.4e-35 151.0 99 73.7
Lsat_1_v5_gn_3_110440 Lactuca sativa HOM05D001966 ORTHO05D007227 8.4e-35 151.0 99 73.7
Lsat_1_v5_gn_4_147680 Lactuca sativa HOM05D001966 ORTHO05D007227 8.4e-35 151.0 99 73.7
Lsat_1_v5_gn_4_147860 Lactuca sativa HOM05D001966 ORTHO05D007227 8.4e-35 151.0 99 73.7
Lsat_1_v5_gn_5_181880 Lactuca sativa HOM05D001966 ORTHO05D007227 8.4e-35 151.0 99 73.7
Lsat_1_v5_gn_6_94301 Lactuca sativa HOM05D001966 ORTHO05D007227 8.4e-35 151.0 99 73.7
Lsat_1_v5_gn_9_39281 Lactuca sativa HOM05D001966 ORTHO05D007227 8.4e-35 151.0 99 73.7
ECA247G0757 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.5e-34 149.4 103 71.8
RhsimPtG0005300 Rhododendron simsii HOM05D001966 ORTHO05D007227 1.8e-32 143.3 94 74.5
SalBow1G8704 Salvia bowleyana HOM05D001966 ORTHO05D007227 1.4e-29 133.7 87 74.7
unitig_91.g26520 Utricularia gibba HOM05D001966 ORTHO05D007227 3.1e-29 132.5 67 89.6
ClCG02G009760 Citrullus lanatus HOM05D001966 ORTHO05D000002 1.2e-28 130.6 111 62.2
CDE02G0843 Ceratophyllum demersum HOM05D001966 ORTHO05D007227 1.5e-28 130.2 91 70.3
AL9U11930 Arabidopsis lyrata HOM05D001966 ORTHO05D007227 5.9e-28 128.3 89 70.8
EL10As10g23965 Beta vulgaris HOM05D001966 ORTHO05D007227 1.0e-27 127.5 102 66.7
C09p24670 Brassica napus HOM05D001966 ORTHO05D007227 3.2e-26 122.5 89 68.5
C09p39340 Brassica napus HOM05D001966 ORTHO05D007227 3.2e-26 122.5 89 68.5
Potri.011G074201 Populus trichocarpa HOM05D001966 ORTHO05D007227 4.2e-26 122.1 91 67.0
SHI27036 Sapria himalayana HOM05D001966 ORTHO05D010986 6.1e-25 118.2 95 67.4
Sc05g0004050 Simmondsia chinensis HOM05D001966 ORTHO05D007227 3.9e-24 115.5 139 48.9
SHI36539 Sapria himalayana HOM05D001966 ORTHO05D007227 1.8e-21 106.7 59 84.7
Sc25g0002010 Simmondsia chinensis HOM05D001966 ORTHO05D007227 1.3e-19 100.5 138 49.3
Sed0014217 Sechium edule HOM05D001966 ORTHO05D007227 5.0e-19 98.6 89 58.4
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 3.6e-17 92.4 75 65.3
VMungo0464G1535 Vigna mungo HOM05D001966 ORTHO05D007227 1.0e-16 90.9 95 55.8
arahy.Tifrunner.gnm1.ann1.WI2XKB Arachis hypogaea HOM05D001966 ORTHO05D007227 3.0e-16 89.4 99 53.5
arahy.Tifrunner.gnm1.ann1.ZHN7AL Arachis hypogaea HOM05D001966 ORTHO05D007227 1.1e-15 87.4 151 43.7
VMungo0720G2248 Vigna mungo HOM05D001966 ORTHO05D007227 3.1e-13 79.3 206 34.0
HanXRQChr14g0462871 Helianthus annuus HOM05D005084 ORTHO05D006254 4.1e-13 79.0 39 92.3
Lalb_Chr17g0346961 Lupinus albus HOM05D008016 ORTHO05D010588 5.3e-13 78.6 48 77.1
COL.COLO4_00694 Corchorus olitorius HOM05D001966 ORTHO05D007227 1.0e-11 74.3 38 89.5
COL.COLO4_02908 Corchorus olitorius HOM05D001966 ORTHO05D007227 1.0e-11 74.3 38 89.5
Atru.chr9.267 Acer truncatum HOM05D001966 ORTHO05D007227 1.3e-11 73.9 43 81.4
VMungo1127G1224 Vigna mungo HOM05D001966 ORTHO05D007227 1.3e-11 73.9 78 53.8
arahy.Tifrunner.gnm1.ann1.WHCD0B Arachis hypogaea HOM05D001966 ORTHO05D007227 3.8e-11 72.4 93 44.1
arahy.Tifrunner.gnm1.ann1.Q8ISGW Arachis hypogaea HOM05D001966 ORTHO05D007227 3.2e-10 69.3 92 46.7
CAN.G1298.17 Capsicum annuum HOM05D001070 ORTHO05D004271 2.7e-09 66.2 36 91.7
Gohir.A09G039165 Gossypium hirsutum HOM05D001966 ORTHO05D007227 8.0e-09 64.7 68 54.4
Nitab4.5_0005831g0030 Nicotiana tabacum HOM05D001090 ORTHO05D006167 1.0e-08 64.3 34 91.2
CAN.G1346.2 Capsicum annuum HOM05D001966 ORTHO05D010588 1.4e-08 63.9 40 82.5
VMungo1233G0001 Vigna mungo HOM05D001966 ORTHO05D010986 1.4e-08 63.9 36 86.1
Sopen02g009090 Solanum pennellii HOM05D008037 ORTHO05D004271 1.8e-08 63.5 31 93.5
SHI26755 Sapria himalayana HOM05D001966 ORTHO05D010986 2.3e-08 63.2 50 64.0
arahy.Tifrunner.gnm1.ann1.TT5YJH Arachis hypogaea HOM05D007952 ORTHO05D009823 3.0e-08 62.8 31 93.5
Medtr4g006040 Medicago truncatula HOM05D008037 ORTHO05D009823 3.0e-08 62.8 31 93.5
Nitab4.5_0006096g0010 Nicotiana tabacum HOM05D007952 ORTHO05D004271 3.0e-08 62.8 31 93.5
Sed0000516 Sechium edule HOM05D008037 ORTHO05D004271 3.0e-08 62.8 31 93.5
Sed0021589 Sechium edule HOM05D008016 ORTHO05D004271 3.0e-08 62.8 31 93.5
BcaC04g22012 Brassica carinata HOM05D001966 ORTHO05D007227 6.7e-08 61.6 30 93.3
arahy.Tifrunner.gnm1.ann1.B37VQ6 Arachis hypogaea HOM05D007952 ORTHO05D009823 8.8e-08 61.2 31 90.3
Gorai.006G045900 Gossypium raimondii HOM05D001966 ORTHO05D007227 8.8e-08 61.2 88 39.8
Nitab4.5_0003101g0110 Nicotiana tabacum HOM05D008354 ORTHO05D010055 8.8e-08 61.2 35 88.6
Nitab4.5_0016007g0040 Nicotiana tabacum HOM05D001966 ORTHO05D010588 1.1e-07 60.8 41 78.0
arahy.Tifrunner.gnm1.ann1.ZMH4QB Arachis hypogaea HOM05D001966 ORTHO05D010986 1.5e-07 60.5 31 90.3
Lsat_1_v5_gn_5_36201 Lactuca sativa HOM05D048309 ORTHO05D031508 1.5e-07 60.5 33 87.9
Nitab4.5_0008813g0010 Nicotiana tabacum HOM05D007952 ORTHO05D004271 1.5e-07 60.5 31 87.1
Peaxi162Scf00080g00518 Petunia axillaris HOM05D001966 ORTHO05D007227 1.5e-07 60.5 49 61.2
Peaxi162Scf00475g00112 Petunia axillaris HOM05D007952 ORTHO05D004271 1.5e-07 60.5 31 83.9
Lj1g0013448 Lotus japonicus HOM05D007952 ORTHO05D009823 2.0e-07 60.1 31 90.3
SabraPtG0006400 Salix brachista HOM05D012647 ORTHO05D014727 2.0e-07 60.1 31 90.3
arahy.Tifrunner.gnm1.ann1.XGYT8C Arachis hypogaea HOM05D008037 ORTHO05D004271 2.6e-07 59.7 31 87.1
Peaxi162Scf00136g00086 Petunia axillaris HOM05D007952 ORTHO05D004271 2.6e-07 59.7 31 90.3
Nitab4.5_0007400g0090 Nicotiana tabacum HOM05D008016 ORTHO05D004271 3.3e-07 59.3 28 96.4
Nitab4.5_0027992g0040 Nicotiana tabacum HOM05D008037 ORTHO05D004271 3.3e-07 59.3 39 71.8
Lj4g0016112 Lotus japonicus HOM05D007952 ORTHO05D009823 5.7e-07 58.5 31 87.1
Psat0s1116g0080 Pisum sativum HOM05D004182 ORTHO05D007321 5.7e-07 58.5 47 63.8
Gohir.1Z049782 Gossypium hirsutum HOM05D001966 ORTHO05D007227 7.4e-07 58.2 30 86.7
Gohir.A04G039285 Gossypium hirsutum HOM05D001966 ORTHO05D007227 7.4e-07 58.2 30 86.7
Gohir.A05G323732 Gossypium hirsutum HOM05D001966 ORTHO05D007227 7.4e-07 58.2 30 86.7
BolSC49t61152H Brassica oleracea HOM05D001966 ORTHO05D007227 9.7e-07 57.8 34 79.4
Glyma.05G084525 Glycine max HOM05D001966 ORTHO05D007227 9.7e-07 57.8 47 63.8
Gohir.A13G086695 Gossypium hirsutum HOM05D001966 ORTHO05D007227 9.7e-07 57.8 36 72.2
Medtr0002s0250 Medicago truncatula HOM05D001966 ORTHO05D007227 9.7e-07 57.8 158 34.8
Nitab4.5_0001727g0120 Nicotiana tabacum HOM05D008016 ORTHO05D010055 9.7e-07 57.8 30 90.0
arahy.Tifrunner.gnm1.ann1.8D90VP Arachis hypogaea HOM05D001966 ORTHO05D007227 1.3e-06 57.4 31 87.1
SHI36397 Sapria himalayana HOM05D008037 ORTHO05D004271 1.3e-06 57.4 31 80.6
Peaxi162Scf00687g00611 Petunia axillaris HOM05D001966 ORTHO05D010055 2.2e-06 56.6 29 89.7
Glyma.19G187300 Glycine max HOM05D007952 ORTHO05D004271 2.8e-06 56.2 31 83.9
arahy.Tifrunner.gnm1.ann1.VZYH4A Arachis hypogaea HOM05D008016 ORTHO05D010588 4.8e-06 55.5 27 92.6
Peaxi162Scf00428g00114 Petunia axillaris HOM05D000680 ORTHO05D005619 4.8e-06 55.5 24 100.0
Aqoxy2G01968 Aquilegia oxysepala HOM05D001966 ORTHO05D007227 8.2e-06 54.7 49 57.1
Nitab4.5_0003351g0090 Nicotiana tabacum HOM05D000325 ORTHO05D002025 8.2e-06 54.7 32 75.0


User provided reference genes

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