Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1648.16 Capsicum annuum HOM05D008299 ORTHO05D010400 1.1e-46 189.5 88 100.0
CAN.G1298.15 Capsicum annuum HOM05D008299 ORTHO05D010400 2.3e-44 181.8 88 96.6
CAN.G343.2 Capsicum annuum HOM05D000445 ORTHO05D010400 1.9e-43 178.7 88 94.3
CAN.G219.11 Capsicum annuum HOM05D000445 ORTHO05D010400 4.8e-42 174.1 88 92.0
CAN.G100.36 Capsicum annuum HOM05D008299 ORTHO05D010400 1.5e-40 169.1 84 92.9
CAN.G129.17 Capsicum annuum HOM05D008299 ORTHO05D010400 1.4e-38 162.5 85 88.2
CSS0008439 Camellia sinensis var. sinensis HOM05D008299 ORTHO05D010400 1.9e-38 162.2 82 90.2
CSS0021182 Camellia sinensis var. sinensis HOM05D008299 ORTHO05D010400 1.9e-38 162.2 82 90.2
CAN.G719.1 Capsicum annuum HOM05D008299 ORTHO05D010400 4.2e-38 161.0 86 86.0
Solyc11g021080.3 Solanum lycopersicum HOM05D008299 ORTHO05D010400 4.2e-38 161.0 88 86.4
Solyc01g017080.2 Solanum lycopersicum HOM05D008299 ORTHO05D010400 7.9e-37 156.8 88 83.0
Solyc02g011920.2 Solanum lycopersicum HOM05D000445 ORTHO05D000314 3.0e-28 128.3 72 83.3
Solyc11g018700.3 Solanum lycopersicum HOM05D008299 ORTHO05D010400 9.0e-25 116.7 55 96.4
SGA_v2.0_scaffold379G50347 Striga asiatica HOM05D008299 ORTHO05D010400 1.4e-22 109.4 65 75.4
CAN.G1178.2 Capsicum annuum HOM05D008299 ORTHO05D010400 2.7e-21 105.1 50 94.0
Solyc01g017150.1 Solanum lycopersicum HOM05D008299 ORTHO05D010400 6.1e-21 104.0 55 83.6
Migut.L00537 Erythranthe guttata HOM05D008299 ORTHO05D010400 3.9e-20 101.3 49 89.8
Solyc00g500038.1 Solanum lycopersicum HOM05D008299 ORTHO05D010400 8.7e-20 100.1 47 93.6
Solyc00g500045.1 Solanum lycopersicum HOM05D008299 ORTHO05D010400 8.7e-20 100.1 47 93.6
Solyc00g500082.1 Solanum lycopersicum HOM05D008299 ORTHO05D010400 8.7e-20 100.1 47 93.6
Solyc00g500127.1 Solanum lycopersicum HOM05D008299 ORTHO05D010400 8.7e-20 100.1 47 93.6
Solyc00g500197.1 Solanum lycopersicum HOM05D008299 ORTHO05D010400 8.7e-20 100.1 47 93.6
Solyc00g500300.1 Solanum lycopersicum HOM05D008299 ORTHO05D010400 8.7e-20 100.1 47 93.6
Solyc00g500326.1 Solanum lycopersicum HOM05D008299 ORTHO05D010400 8.7e-20 100.1 47 93.6
Thhalv10003089m.g Eutrema salsugineum HOM05D008299 ORTHO05D010400 1.3e-15 86.3 54 72.2
Potri.019G028450 Populus trichocarpa HOM05D008299 ORTHO05D010400 1.3e-15 86.3 67 65.7
Solyc03g058240.1 Solanum lycopersicum HOM05D008299 ORTHO05D010400 3.8e-15 84.7 54 70.4
ATCG00870 Arabidopsis thaliana HOM05D008299 ORTHO05D010400 7.9e-13 77.0 50 72.0
ATCG01270 Arabidopsis thaliana HOM05D008299 ORTHO05D010400 7.9e-13 77.0 50 72.0
BraSC48t46294Z Brassica rapa HOM05D008299 ORTHO05D010400 7.9e-13 77.0 50 72.0
BraSC48t46311Z Brassica rapa HOM05D008299 ORTHO05D010400 7.9e-13 77.0 50 72.0
BraSC48t46344Z Brassica rapa HOM05D008299 ORTHO05D010400 7.9e-13 77.0 50 72.0
CARHR282310 Cardamine hirsuta HOM05D008299 ORTHO05D010400 7.9e-13 77.0 50 72.0
CARHR282550 Cardamine hirsuta HOM05D008299 ORTHO05D010400 7.9e-13 77.0 50 72.0
C06p23160 Brassica napus HOM05D008299 ORTHO05D010400 1.8e-12 75.9 50 70.0
C09p24750 Brassica napus HOM05D008299 ORTHO05D010400 1.8e-12 75.9 50 70.0
BolSC29t60493H Brassica oleracea HOM05D008299 ORTHO05D010400 1.8e-12 75.9 50 70.0
BolSC37t60783H Brassica oleracea HOM05D008299 ORTHO05D010400 1.8e-12 75.9 50 70.0
BolSC44t60837H Brassica oleracea HOM05D008299 ORTHO05D010400 1.8e-12 75.9 50 70.0
BolSC45t60893H Brassica oleracea HOM05D008299 ORTHO05D010400 1.8e-12 75.9 50 70.0
BolSC49t61213H Brassica oleracea HOM05D008299 ORTHO05D010400 1.8e-12 75.9 50 70.0
BraSC103t45416Z Brassica rapa HOM05D008299 ORTHO05D010400 1.8e-12 75.9 50 70.0
BraSC103t45438Z Brassica rapa HOM05D008299 ORTHO05D010400 1.8e-12 75.9 50 70.0
BraSC143t45671Z Brassica rapa HOM05D008299 ORTHO05D010400 1.8e-12 75.9 50 70.0
BraSC25t45895Z Brassica rapa HOM05D008299 ORTHO05D010400 1.8e-12 75.9 50 70.0
Thhalv10012154m.g Eutrema salsugineum HOM05D008299 ORTHO05D010400 2.3e-12 75.5 50 70.0
BraSC54t46357Z Brassica rapa HOM05D008299 ORTHO05D010400 3.0e-12 75.1 42 81.0
Gohir.1Z050502 Gossypium hirsutum HOM05D008299 ORTHO05D010400 3.0e-12 75.1 42 81.0
Gohir.D02G117444 Gossypium hirsutum HOM05D008299 ORTHO05D010400 3.0e-12 75.1 42 81.0
BraSC138t45545Z Brassica rapa HOM05D008299 ORTHO05D010400 5.1e-12 74.3 46 78.3
BraSC58t46447Z Brassica rapa HOM05D008299 ORTHO05D010400 6.7e-12 73.9 42 78.6
BraSC59t46562Z Brassica rapa HOM05D008299 ORTHO05D010400 6.7e-12 73.9 42 78.6
BolC2t08923H Brassica oleracea HOM05D008299 ORTHO05D010400 1.1e-11 73.2 48 68.8
BolSC29t60562H Brassica oleracea HOM05D008299 ORTHO05D010400 1.1e-11 73.2 43 74.4
RcHm_v2.0_Chr5g0051131 Rosa chinensis HOM05D008299 ORTHO05D010400 2.2e-10 68.9 33 84.8
RcHm_v2.0_CPg0501791 Rosa chinensis HOM05D008299 ORTHO05D010400 2.2e-10 68.9 33 84.8
RcHm_v2.0_CPg0502621 Rosa chinensis HOM05D008299 ORTHO05D010400 2.2e-10 68.9 33 84.8
AL9U12040 Arabidopsis lyrata HOM05D008299 ORTHO05D010400 6.3e-10 67.4 45 68.9
Gohir.A09G103316 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.2e-08 63.2 37 75.7
ClCG00G002340 Citrullus lanatus HOM05D008299 ORTHO05D010400 1.7e-07 59.3 29 82.8
Hma1.2p1_0005F.1_g004230 Hydrangea macrophylla HOM05D000083 ORTHO05D003582 2.2e-07 58.9 35 74.3
CAN.G1632.14 Capsicum annuum HOM05D067724 ORTHO05D115467 8.5e-07 57.0 50 60.0
CAN.G1690.6 Capsicum annuum HOM05D067724 ORTHO05D115821 8.5e-07 57.0 50 60.0


User provided reference genes

Program Settings