Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G164.5 Capsicum annuum HOM05D006012 ORTHO05D007315 2.8e-126 455.3 230 100.0
Peaxi162Scf00000g06018 Petunia axillaris HOM05D006012 ORTHO05D007315 6.9e-16 88.6 52 92.3
PGSC0003DMG402007845 Solanum tuberosum HOM05D006012 ORTHO05D007315 6.9e-16 88.6 52 92.3
Solyc12g011270.2 Solanum lycopersicum HOM05D006012 ORTHO05D007315 9.0e-16 88.2 52 90.4
Sopen12g006600 Solanum pennellii HOM05D006012 ORTHO05D007315 9.0e-16 88.2 52 90.4
Nitab4.5_0000639g0250 Nicotiana tabacum HOM05D006012 ORTHO05D007315 2.6e-15 86.7 52 88.5
Nitab4.5_0000505g0060 Nicotiana tabacum HOM05D006012 ORTHO05D007315 5.8e-15 85.5 52 86.5
HanXRQChr09g0257481 Helianthus annuus HOM05D006012 ORTHO05D007315 8.4e-14 81.6 52 84.6
vmacro09453 Vaccinium macrocarpon HOM05D006012 ORTHO05D007315 1.1e-13 81.3 52 82.7
HanXRQChr13g0397181 Helianthus annuus HOM05D006012 ORTHO05D007315 2.4e-13 80.1 52 82.7
QL02p049241 Quercus lobata HOM05D006012 ORTHO05D007315 2.4e-13 80.1 52 82.7
QL02p049408 Quercus lobata HOM05D006012 ORTHO05D007315 2.4e-13 80.1 52 82.7
CANSAT80G2879 Cannabis sativa HOM05D006012 ORTHO05D007315 4.2e-13 79.3 52 82.7
Atru.chr1.951 Acer truncatum HOM05D006012 ORTHO05D007315 5.4e-13 79.0 52 82.7
arahy.Tifrunner.gnm1.ann1.IH2J48 Arachis hypogaea HOM05D006012 ORTHO05D007315 5.4e-13 79.0 52 82.7
MSTRG.26253 Avicennia marina HOM05D006012 ORTHO05D007315 5.4e-13 79.0 52 78.8
Glyma.19G001300 Glycine max HOM05D006012 ORTHO05D007315 5.4e-13 79.0 52 82.7
EL10Ac1g00408 Beta vulgaris HOM05D006012 ORTHO05D007315 7.1e-13 78.6 52 80.8
Lj2g0010575 Lotus japonicus HOM05D006012 ORTHO05D007315 7.1e-13 78.6 52 80.8
Phvul.004G001500 Phaseolus vulgaris HOM05D006012 ORTHO05D007315 7.1e-13 78.6 52 84.6
VMungo0464G1120 Vigna mungo HOM05D006012 ORTHO05D007315 7.1e-13 78.6 52 84.6
Cc05_g09920 Coffea canephora HOM05D006012 ORTHO05D007315 9.3e-13 78.2 52 76.9
Duzib211G0637 Durio zibethinus HOM05D006012 ORTHO05D007315 9.3e-13 78.2 52 78.8
Sabra14G0131900 Salix brachista HOM05D006012 ORTHO05D007315 9.3e-13 78.2 52 80.8
ECA240G1168 Erigeron canadensis HOM05D006012 ORTHO05D007315 1.2e-12 77.8 52 82.7
Oeu009873.3 Olea europaea HOM05D006012 ORTHO05D007315 1.2e-12 77.8 52 80.8
Lj8C140T21 Lonicera japonica HOM05D006012 ORTHO05D007315 1.6e-12 77.4 52 78.8
MD09G1258600 Malus domestica HOM05D006012 ORTHO05D007315 1.6e-12 77.4 52 82.7
Ah.11g041370 Amaranthus hybridus HOM05D006012 ORTHO05D007315 2.1e-12 77.0 52 78.8
MELO3C020320.2 Cucumis melo HOM05D006012 ORTHO05D007315 2.1e-12 77.0 52 80.8
CsaV3_3G017730 Cucumis sativus L. HOM05D006012 ORTHO05D007315 2.1e-12 77.0 52 80.8
Lsat_1_v5_gn_9_103320 Lactuca sativa HOM05D006012 ORTHO05D007315 2.1e-12 77.0 52 80.8
Lalb_Chr09g0334741 Lupinus albus HOM05D006012 ORTHO05D007315 2.1e-12 77.0 52 80.8
arahy.Tifrunner.gnm1.ann1.X95WAW Arachis hypogaea HOM05D006012 ORTHO05D007315 2.7e-12 76.6 52 80.8
Manes.13G058700 Manihot esculenta HOM05D006012 ORTHO05D007315 2.7e-12 76.6 52 82.7
SalBow5G4668 Salvia bowleyana HOM05D006012 ORTHO05D007315 2.7e-12 76.6 52 76.9
THA.LOC104819018 Tarenaya hassleriana HOM05D006012 ORTHO05D007315 2.7e-12 76.6 52 75.0
AUR62036845 Chenopodium quinoa HOM05D006012 ORTHO05D007315 3.5e-12 76.3 52 76.9
AUR62040810 Chenopodium quinoa HOM05D006012 ORTHO05D007315 3.5e-12 76.3 52 76.9
Prupe.3G150500 Prunus persica HOM05D006012 ORTHO05D007315 3.5e-12 76.3 52 80.8
ClCG05G010720 Citrullus lanatus HOM05D006012 ORTHO05D007315 4.6e-12 75.9 52 78.8
Dinv26631 Davidia involucrata HOM05D006012 ORTHO05D007315 4.6e-12 75.9 52 78.8
Potri.014G172300 Populus trichocarpa HOM05D006012 ORTHO05D007315 4.6e-12 75.9 52 78.8
RcHm_v2.0_Chr7g0222291 Rosa chinensis HOM05D006012 ORTHO05D007315 4.6e-12 75.9 52 78.8
TWI18G0871 Tripterygium wilfordii HOM05D006012 ORTHO05D007315 4.6e-12 75.9 52 78.8
CSS0007923 Camellia sinensis var. sinensis HOM05D006012 ORTHO05D007315 6.0e-12 75.5 52 78.8
CSS0032241 Camellia sinensis var. sinensis HOM05D006012 ORTHO05D007315 6.0e-12 75.5 52 78.8
Thhalv10028718m.g Eutrema salsugineum HOM05D006012 ORTHO05D007315 6.0e-12 75.5 52 76.9
MSTRG.26432 Avicennia marina HOM05D006012 ORTHO05D007315 7.9e-12 75.1 52 75.0
BcaB01g01588 Brassica carinata HOM05D006012 ORTHO05D007315 7.9e-12 75.1 52 76.9
BcaC04g21109 Brassica carinata HOM05D006012 ORTHO05D007315 7.9e-12 75.1 52 76.9
A03p29140 Brassica napus HOM05D006012 ORTHO05D007315 7.9e-12 75.1 52 78.8
A09p28100 Brassica napus HOM05D006012 ORTHO05D007315 7.9e-12 75.1 52 76.9
C09p35600 Brassica napus HOM05D006012 ORTHO05D007315 7.9e-12 75.1 52 76.9
BraA03t12108Z Brassica rapa HOM05D006012 ORTHO05D007315 7.9e-12 75.1 52 78.8
BraA09t38374Z Brassica rapa HOM05D006012 ORTHO05D007315 7.9e-12 75.1 52 76.9
DCAR_021073 Daucus carota HOM05D006012 ORTHO05D007315 7.9e-12 75.1 52 78.8
BcaB01g02714 Brassica carinata HOM05D006012 ORTHO05D007315 1.0e-11 74.7 52 76.9
Medtr6g003970 Medicago truncatula HOM05D006012 ORTHO05D007315 1.0e-11 74.7 52 78.8
Ca_04122_v3 Cicer arietinum L. HOM05D006012 ORTHO05D007315 1.3e-11 74.3 52 76.9
Eucgr.K01363 Eucalyptus grandis HOM05D006012 ORTHO05D007315 1.3e-11 74.3 52 75.0
Sed0020192 Sechium edule HOM05D006012 ORTHO05D007315 1.3e-11 74.3 52 76.9
COL.COLO4_24667 Corchorus olitorius HOM05D006012 ORTHO05D007315 1.8e-11 73.9 52 76.9
Aa31LG5G18160 Aethionema arabicum HOM05D006012 ORTHO05D007315 2.3e-11 73.6 52 76.9
Aqoxy6G00639 Aquilegia oxysepala HOM05D006012 ORTHO05D007315 2.3e-11 73.6 52 69.2
Ciclev10020467m.g Citrus clementina HOM05D006012 ORTHO05D007315 2.3e-11 73.6 52 76.9
Psat1g052160 Pisum sativum HOM05D006012 ORTHO05D007315 2.3e-11 73.6 52 78.8
RcHm_v2.0_Chr5g0052201 Rosa chinensis HOM05D006012 ORTHO05D007315 2.3e-11 73.6 52 76.9
Gohir.A07G162400 Gossypium hirsutum HOM05D006012 ORTHO05D007315 3.0e-11 73.2 52 76.9
Thecc.01G203100 Theobroma cacao HOM05D006012 ORTHO05D007315 3.0e-11 73.2 52 75.0
Carub.0006s2994 Capsella rubella HOM05D006012 ORTHO05D007315 3.9e-11 72.8 52 75.0
Nn1g07641 Nelumbo nucifera HOM05D006012 ORTHO05D007315 3.9e-11 72.8 52 71.2
AT4G11120 Arabidopsis thaliana HOM05D006012 ORTHO05D007315 5.1e-11 72.4 52 75.0
CiPaw.04G044600 Carya illinoinensis HOM05D006012 ORTHO05D007315 5.1e-11 72.4 52 75.0
Gohir.D07G169000 Gossypium hirsutum HOM05D006012 ORTHO05D007315 5.1e-11 72.4 52 76.9
Gorai.N000600 Gossypium raimondii HOM05D006012 ORTHO05D007315 5.1e-11 72.4 52 76.9
Sp6g06290 Schrenkiella parvula HOM05D006012 ORTHO05D007315 5.1e-11 72.4 52 71.2
Sc15g0007370 Simmondsia chinensis HOM05D006012 ORTHO05D007315 5.1e-11 72.4 52 73.1
Cpa.g.sc8.4 Carica papaya HOM05D006012 ORTHO05D007315 6.7e-11 72.0 52 75.0
GSVIVG01015570001 Vitis vinifera HOM05D006012 ORTHO05D007315 6.7e-11 72.0 52 73.1
CARHR255460 Cardamine hirsuta HOM05D006012 ORTHO05D007315 8.7e-11 71.6 52 73.1
Migut.K00294 Erythranthe guttata HOM05D006012 ORTHO05D007315 8.7e-11 71.6 52 69.2
TAR629G0946 Trochodendron aralioides HOM05D006012 ORTHO05D007315 8.7e-11 71.6 52 75.0
FvH4_3g28810 Fragaria vesca HOM05D006012 ORTHO05D007315 1.1e-10 71.2 52 73.1
FAN04G1133 Fragaria x ananassa HOM05D006012 ORTHO05D007315 1.1e-10 71.2 52 75.0
FAN11G1416 Fragaria x ananassa HOM05D006012 ORTHO05D007315 1.1e-10 71.2 52 73.1
Sed0024337 Sechium edule HOM05D006012 ORTHO05D007315 1.1e-10 71.2 52 76.9
MBI14_g12732_MAGBIO Magnolia biondii HOM05D006012 ORTHO05D007315 1.5e-10 70.9 52 71.2
Haze_14200 Corylus avellana HOM05D006012 ORTHO05D007315 1.9e-10 70.5 52 71.2
HPP92_021924 Vanilla planifolia HOM05D006012 ORTHO05D007315 1.9e-10 70.5 52 71.2
FAN16G1998 Fragaria x ananassa HOM05D006012 ORTHO05D007315 2.5e-10 70.1 52 71.2
Oeu006134.1 Olea europaea HOM05D006012 ORTHO05D007315 3.3e-10 69.7 52 75.0
AL6G45290 Arabidopsis lyrata HOM05D006012 ORTHO05D007315 4.3e-10 69.3 52 73.1
SGA_v2.0_scaffold153G36899 Striga asiatica HOM05D006232 ORTHO05D007315 4.3e-10 69.3 52 69.2
SGA_v2.0_scaffold340G49316 Striga asiatica HOM05D003442 ORTHO05D007315 4.3e-10 69.3 52 69.2
Zm00001eb160260 Zea mays HOM05D006012 ORTHO05D007315 4.3e-10 69.3 52 69.2
FAN25G1383 Fragaria x ananassa HOM05D006012 ORTHO05D007315 5.6e-10 68.9 52 71.2
ATR0751G237 Amborella trichopoda HOM05D006012 ORTHO05D007315 9.6e-10 68.2 52 67.3
SHI10195 Sapria himalayana HOM05D006012 ORTHO05D007315 9.6e-10 68.2 52 71.2
FAN21G0516 Fragaria x ananassa HOM05D006012 ORTHO05D007315 1.3e-09 67.8 52 69.2
PGR044G1532 Punica granatum HOM05D006012 ORTHO05D007315 6.2e-09 65.5 52 73.1
SEGI_03282 Sequoiadendron giganteum HOM05D006012 ORTHO05D007315 2.4e-08 63.5 52 63.5
SEGI_05676 Sequoiadendron giganteum HOM05D006012 ORTHO05D007315 2.4e-08 63.5 52 63.5
AagrBONN_evm.TU.Sc2ySwM_369.366 Anthoceros agrestis HOM05D006012 ORTHO05D007315 4.0e-08 62.8 52 63.5
SMO364G0063 Selaginella moellendorffii HOM05D006012 ORTHO05D007315 2.6e-07 60.1 52 59.6
SMO364G0407 Selaginella moellendorffii HOM05D006012 ORTHO05D007315 2.6e-07 60.1 52 59.6
SMO364G0746 Selaginella moellendorffii HOM05D006012 ORTHO05D007315 2.6e-07 60.1 52 59.6
CBR_g24367 Chara braunii HOM05D006012 ORTHO05D007315 3.4e-07 59.7 52 59.6
PSO063G6058 Papaver somniferum HOM05D006012 ORTHO05D007315 4.5e-07 59.3 52 61.5
Pp3c14_4820 Physcomitrium patens HOM05D006012 ORTHO05D007315 3.8e-06 56.2 52 59.6


User provided reference genes

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