Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1635.9 Capsicum annuum HOM05D005458 ORTHO05D005672 6.9e-38 160.2 85 100.0
PGSC0003DMG400031295 Solanum tuberosum HOM05D005458 ORTHO05D005672 5.1e-17 90.9 66 80.3
CsaV3_2G011550 Cucumis sativus L. HOM05D005458 ORTHO05D005672 6.7e-17 90.5 67 79.1
TWI75G0430 Tripterygium wilfordii HOM05D005458 ORTHO05D005672 1.1e-16 89.7 64 81.2
Potri.017G055501 Populus trichocarpa HOM05D005458 ORTHO05D005672 5.7e-16 87.4 65 75.4
Aqoxy2G03857 Aquilegia oxysepala HOM05D005458 ORTHO05D005672 7.4e-16 87.0 69 76.8
Lalb_Chr01g0022281 Lupinus albus HOM05D005458 ORTHO05D005672 2.2e-15 85.5 66 80.3
Glyma.08G351700 Glycine max HOM05D005458 ORTHO05D005672 3.7e-15 84.7 61 77.0
ClCG06G007830 Citrullus lanatus HOM05D005458 ORTHO05D005672 4.8e-15 84.3 55 83.6
Nn1g07886 Nelumbo nucifera HOM05D005458 ORTHO05D005672 4.8e-15 84.3 65 73.8
Peaxi162Scf00047g00517 Petunia axillaris HOM05D005458 ORTHO05D005672 4.8e-15 84.3 60 85.0
Thecc.01G224300 Theobroma cacao HOM05D005458 ORTHO05D005672 4.8e-15 84.3 66 75.8
Prupe.1G008500 Prunus persica HOM05D005458 ORTHO05D005672 6.3e-15 84.0 62 80.6
Manes.15G054000 Manihot esculenta HOM05D005458 ORTHO05D005672 8.2e-15 83.6 61 77.0
Lsat_1_v5_gn_6_60280 Lactuca sativa HOM05D005458 ORTHO05D005672 1.4e-14 82.8 66 80.3
Atru.chr4.1700 Acer truncatum HOM05D005458 ORTHO05D005672 1.8e-14 82.4 57 80.7
Phvul.008G127837 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 1.8e-14 82.4 61 73.8
Potri.014G056600 Populus trichocarpa HOM05D005458 ORTHO05D005672 1.8e-14 82.4 70 75.7
GSVIVG01021052001 Vitis vinifera HOM05D005458 ORTHO05D005672 9.0e-14 80.1 89 60.7
Ciclev10006390m.g Citrus clementina HOM05D005458 ORTHO05D005672 1.2e-13 79.7 65 76.9
PSO017G2416 Papaver somniferum HOM05D005458 ORTHO05D005672 1.5e-13 79.3 65 73.8
PSO063G0044 Papaver somniferum HOM05D005458 ORTHO05D005672 1.5e-13 79.3 65 73.8
Prupe.8G201600 Prunus persica HOM05D005458 ORTHO05D005672 1.5e-13 79.3 77 66.2
CiPaw.01G120800 Carya illinoinensis HOM05D005458 ORTHO05D005672 2.0e-13 79.0 68 70.6
ECA248G3568 Erigeron canadensis HOM05D000609 ORTHO05D000462 2.0e-13 79.0 62 75.8
Ca_17417_v3 Cicer arietinum L. HOM05D005458 ORTHO05D005672 2.6e-13 78.6 63 74.6
Cc03_g07880 Coffea canephora HOM05D005458 ORTHO05D005672 2.6e-13 78.6 58 82.8
MELO3C020447.2 Cucumis melo HOM05D005458 ORTHO05D005672 4.5e-13 77.8 68 72.1
GSVIVG01003386001 Vitis vinifera HOM05D005458 ORTHO05D005672 4.5e-13 77.8 58 77.6
Psat3g147360 Pisum sativum HOM05D005458 ORTHO05D005672 5.9e-13 77.4 63 74.6
Sc05g0002070 Simmondsia chinensis HOM05D005458 ORTHO05D005672 5.9e-13 77.4 56 80.4
TPR.G14533 Trifolium pratense HOM05D005458 ORTHO05D005672 5.9e-13 77.4 64 75.0
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 7.7e-13 77.0 67 71.6
Gohir.A07G157232 Gossypium hirsutum HOM05D005458 ORTHO05D005672 7.7e-13 77.0 68 69.1
Lalb_Chr19g0125681 Lupinus albus HOM05D005458 ORTHO05D005672 7.7e-13 77.0 88 62.5
Sc19g0007160 Simmondsia chinensis HOM05D005458 ORTHO05D005672 7.7e-13 77.0 65 73.8
Haze_24813 Corylus avellana HOM05D005458 ORTHO05D005672 1.0e-12 76.6 62 74.2
Rhsim02G0057300 Rhododendron simsii HOM05D005458 ORTHO05D005672 1.3e-12 76.3 55 83.6
Gohir.D07G163401 Gossypium hirsutum HOM05D005458 ORTHO05D005672 2.2e-12 75.5 67 68.7
Gorai.001G187200 Gossypium raimondii HOM05D005458 ORTHO05D005672 2.2e-12 75.5 67 68.7
CANSAT11G1273 Cannabis sativa HOM05D005458 ORTHO05D005672 2.9e-12 75.1 66 66.7
Hund16751 Selenicereus undatus HOM05D005458 ORTHO05D005672 3.8e-12 74.7 67 73.1
ATR1145G024 Amborella trichopoda HOM05D005458 ORTHO05D005672 8.5e-12 73.6 65 75.4
AT3G24100 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 8.5e-12 73.6 47 83.0
Cpa.g.sc2154.1 Carica papaya HOM05D005458 ORTHO05D005672 8.5e-12 73.6 60 76.7
A04p08570 Brassica napus HOM05D005458 ORTHO05D005672 1.1e-11 73.2 47 83.0
BolC4t25811H Brassica oleracea HOM05D005458 ORTHO05D005672 1.1e-11 73.2 47 83.0
BraA04t16551Z Brassica rapa HOM05D005458 ORTHO05D005672 1.1e-11 73.2 47 83.0
Carub.0003s2440 Capsella rubella HOM05D005458 ORTHO05D005672 1.1e-11 73.2 46 84.8
Thhalv10002785m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 1.1e-11 73.2 46 82.6
Hma1.2p1_1407F.1_g281420 Hydrangea macrophylla HOM05D000434 ORTHO05D005672 1.1e-11 73.2 63 71.4
Eucgr.H00051 Eucalyptus grandis HOM05D005458 ORTHO05D005672 1.4e-11 72.8 66 68.2
FvH4_4g16450 Fragaria vesca HOM05D005458 ORTHO05D005672 1.4e-11 72.8 80 67.5
FAN15G3619 Fragaria x ananassa HOM05D005458 ORTHO05D005672 1.4e-11 72.8 63 73.0
unitig_736.g22466 Utricularia gibba HOM05D005458 ORTHO05D005672 1.4e-11 72.8 46 84.8
AT4G13615 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 1.9e-11 72.4 46 82.6
Lj1g0002931 Lotus japonicus HOM05D005458 ORTHO05D005672 1.9e-11 72.4 60 70.0
Phvul.010G019701 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 1.9e-11 72.4 63 71.4
Pp3c12_4180 Physcomitrium patens HOM05D005458 ORTHO05D005672 1.9e-11 72.4 61 73.8
Zm00001eb287790 Zea mays HOM05D005458 ORTHO05D005672 1.9e-11 72.4 65 69.2
Gorai.004G226200 Gossypium raimondii HOM05D005458 ORTHO05D005672 2.5e-11 72.0 67 68.7
AL3G39170 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 3.2e-11 71.6 45 84.4
CARHR100100 Cardamine hirsuta HOM05D005458 ORTHO05D005672 3.2e-11 71.6 45 84.4
Migut.D02491 Erythranthe guttata HOM05D005458 ORTHO05D005672 3.2e-11 71.6 67 68.7
Mapoly0075s0018 Marchantia polymorpha HOM05D005458 ORTHO05D005672 5.5e-11 70.9 70 68.6
CARHR219300 Cardamine hirsuta HOM05D005458 ORTHO05D005672 7.2e-11 70.5 46 80.4
Cpa.g.sc8.142 Carica papaya HOM05D005458 ORTHO05D005672 7.2e-11 70.5 56 71.4
EL10Ac3g07484 Beta vulgaris HOM05D005458 ORTHO05D005672 9.4e-11 70.1 64 68.8
Thhalv10026730m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 9.4e-11 70.1 45 82.2
Glyma.18G164200 Glycine max HOM05D005458 ORTHO05D005672 9.4e-11 70.1 66 69.7
Pp3c4_17970 Physcomitrium patens HOM05D005458 ORTHO05D005672 9.4e-11 70.1 61 73.8
Aa31LG9G4840 Aethionema arabicum HOM05D002547 ORTHO05D002649 1.2e-10 69.7 65 63.1
Duzib211G0320 Durio zibethinus HOM05D005458 ORTHO05D005672 1.2e-10 69.7 46 84.8
Gohir.D07G207100 Gossypium hirsutum HOM05D005458 ORTHO05D005672 1.2e-10 69.7 46 82.6
Gorai.001G233500 Gossypium raimondii HOM05D005458 ORTHO05D005672 1.2e-10 69.7 46 82.6
VMungo1383G3675 Vigna mungo HOM05D005458 ORTHO05D000001 1.2e-10 69.7 62 67.7
arahy.Tifrunner.gnm1.ann1.XWTR79 Arachis hypogaea HOM05D005458 ORTHO05D005672 1.6e-10 69.3 45 86.7
Carub.0007s2961 Capsella rubella HOM05D005458 ORTHO05D005672 1.6e-10 69.3 58 69.0
Thhalv10026728m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 1.6e-10 69.3 58 69.0
Manes.12G045600 Manihot esculenta HOM05D005458 ORTHO05D005672 1.6e-10 69.3 53 77.4
Hund27148 Selenicereus undatus HOM05D005458 ORTHO05D005672 1.6e-10 69.3 70 64.3
AL7G42970 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 2.7e-10 68.6 45 80.0
BcaC02g09406 Brassica carinata HOM05D016886 ORTHO05D005672 2.7e-10 68.6 44 84.1
MD05G1174200 Malus domestica HOM05D005458 ORTHO05D005672 3.6e-10 68.2 62 67.7
Aa31LG9G4030 Aethionema arabicum HOM05D005458 ORTHO05D005672 4.6e-10 67.8 43 83.7
BcaB04g17662 Brassica carinata HOM05D005458 ORTHO05D005672 6.1e-10 67.4 44 81.8
Medtr7g056410 Medicago truncatula HOM05D005458 ORTHO05D005672 7.9e-10 67.0 59 71.2
Potri.001G315400 Populus trichocarpa HOM05D005458 ORTHO05D005672 7.9e-10 67.0 46 84.8
Pp3c13_10560 Physcomitrium patens HOM05D005458 ORTHO05D005672 1.0e-09 66.6 50 80.0
Lsat_1_v5_gn_8_89780 Lactuca sativa HOM05D005458 ORTHO05D005672 1.4e-09 66.2 68 64.7
Peaxi162Scf00594g00523 Petunia axillaris HOM05D005458 ORTHO05D005672 1.4e-09 66.2 67 65.7
VMungo0331G1336 Vigna mungo HOM05D005458 ORTHO05D005672 2.3e-09 65.5 67 65.7
Dinv27235 Davidia involucrata HOM05D005458 ORTHO05D005672 3.0e-09 65.1 58 67.2
Duzib133G0368 Durio zibethinus HOM05D005458 ORTHO05D005672 3.0e-09 65.1 46 80.4
Lalb_Chr07g0194291 Lupinus albus HOM05D005458 ORTHO05D005672 3.0e-09 65.1 62 62.9
Sp7g11280 Schrenkiella parvula HOM05D017066 ORTHO05D005672 3.0e-09 65.1 42 83.3
Duzib138G0965 Durio zibethinus HOM05D005458 ORTHO05D005672 3.9e-09 64.7 46 80.4
AUR62001097 Chenopodium quinoa HOM05D001937 ORTHO05D007024 5.1e-09 64.3 66 63.6
FAN07G0843 Fragaria x ananassa HOM05D005458 ORTHO05D005672 5.1e-09 64.3 65 72.3
arahy.Tifrunner.gnm1.ann1.AN5TC9 Arachis hypogaea HOM05D005458 ORTHO05D005672 6.7e-09 63.9 47 78.7
Os05g0407100 Oryza sativa ssp. japonica HOM05D005458 ORTHO05D005672 6.7e-09 63.9 55 70.9
PGR142G1434 Punica granatum HOM05D005458 ORTHO05D005672 6.7e-09 63.9 66 62.1
COL.COLO4_12105 Corchorus olitorius HOM05D001094 ORTHO05D001050 8.8e-09 63.5 42 88.1
DCAR_018640 Daucus carota HOM05D001184 ORTHO05D003397 1.5e-08 62.8 45 80.0
Pp3c12_4160 Physcomitrium patens HOM05D005458 ORTHO05D005672 1.5e-08 62.8 57 66.7
arahy.Tifrunner.gnm1.ann1.58ZGJB Arachis hypogaea HOM05D005458 ORTHO05D005672 1.9e-08 62.4 46 78.3
Lj3g0027829 Lotus japonicus HOM05D005458 ORTHO05D005672 2.5e-08 62.0 51 68.6
MD04G1009100 Malus domestica HOM05D005458 ORTHO05D005672 3.3e-08 61.6 59 72.9
arahy.Tifrunner.gnm1.ann1.U1G5UA Arachis hypogaea HOM05D005458 ORTHO05D005672 5.7e-08 60.8 41 85.4
Gohir.A08G195125 Gossypium hirsutum HOM05D005458 ORTHO05D005672 1.7e-07 59.3 63 63.5
Migut.N00389 Erythranthe guttata HOM05D005458 ORTHO05D005672 2.8e-07 58.5 66 60.6
ECA236G0552 Erigeron canadensis HOM05D001779 ORTHO05D001753 3.7e-07 58.2 64 59.4
THA.LOC104804811 Tarenaya hassleriana HOM05D005458 ORTHO05D005672 3.7e-07 58.2 65 56.9
ClCG09G008920 Citrullus lanatus HOM05D001590 ORTHO05D005672 4.8e-07 57.8 58 67.2
Manes.03G147401 Manihot esculenta HOM05D005458 ORTHO05D005672 4.8e-07 57.8 62 61.3
Phvul.010G019201 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 6.3e-07 57.4 82 50.0
CiPaw.03G148500 Carya illinoinensis HOM05D005458 ORTHO05D005672 1.1e-06 56.6 60 61.7
C08p07830 Brassica napus HOM05D005458 ORTHO05D005672 1.4e-06 56.2 58 60.3
BolC8t47637H Brassica oleracea HOM05D005458 ORTHO05D005672 1.4e-06 56.2 58 60.3
Ah.05g178960 Amaranthus hybridus HOM05D005458 ORTHO05D005672 3.1e-06 55.1 43 76.7
Psat4g203440 Pisum sativum HOM05D005458 ORTHO05D005672 3.1e-06 55.1 62 61.3
AL8G12500 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 4.1e-06 54.7 49 65.3
EL10Ac1g00186 Beta vulgaris HOM05D005458 ORTHO05D005672 4.1e-06 54.7 67 59.7
CSS0011220 Camellia sinensis var. sinensis HOM05D005458 ORTHO05D005672 4.1e-06 54.7 65 63.1
Cre06.g278238 Chlamydomonas reinhardtii HOM05D005458 ORTHO05D005672 4.1e-06 54.7 53 66.0
BcaC07g37341 Brassica carinata HOM05D005458 ORTHO05D005672 5.3e-06 54.3 57 59.6
Dinv27233 Davidia involucrata HOM05D012872 ORTHO05D005672 9.1e-06 53.5 51 58.8


User provided reference genes

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