Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1635.6 Capsicum annuum HOM05D006147 ORTHO05D007501 4.0e-204 714.5 359 100.0
PGSC0003DMG402031287 Solanum tuberosum HOM05D006147 ORTHO05D007501 1.1e-180 636.7 354 91.0
Sopen09g034870 Solanum pennellii HOM05D006147 ORTHO05D007501 2.4e-180 635.6 354 90.4
Solyc09g091970.4 Solanum lycopersicum HOM05D006147 ORTHO05D007501 1.5e-179 632.9 362 89.0
Peaxi162Scf00684g00123 Petunia axillaris HOM05D006147 ORTHO05D007501 5.3e-164 581.3 327 87.5
TWI31G1450 Tripterygium wilfordii HOM05D006147 ORTHO05D007501 8.2e-157 557.4 351 78.3
Cpa.g.sc150.15 Carica papaya HOM05D006147 ORTHO05D007501 1.1e-156 557.0 351 78.6
Potri.009G124800 Populus trichocarpa HOM05D006147 ORTHO05D007501 1.8e-156 556.2 359 76.0
VMungo1127G0575 Vigna mungo HOM05D006147 ORTHO05D007501 3.1e-156 555.4 351 77.2
Prupe.8G083600 Prunus persica HOM05D006147 ORTHO05D007501 1.5e-155 553.1 351 77.8
TAR628G0064 Trochodendron aralioides HOM05D006147 ORTHO05D007501 3.4e-155 552.0 346 76.6
Cfa005114 Carpinus fangiana HOM05D006147 ORTHO05D007501 1.7e-154 549.7 351 77.8
RcHm_v2.0_Chr6g0267981 Rosa chinensis HOM05D006147 ORTHO05D007501 2.2e-154 549.3 360 76.7
COL.COLO4_26048 Corchorus olitorius HOM05D006147 ORTHO05D007501 2.9e-154 548.9 348 77.6
Gohir.A03G199400 Gossypium hirsutum HOM05D006147 ORTHO05D007501 6.5e-154 547.7 349 77.7
Oeu055635.1 Olea europaea HOM05D006147 ORTHO05D007501 6.5e-154 547.7 323 82.0
Lalb_Chr03g0025341 Lupinus albus HOM05D006147 ORTHO05D007501 8.4e-154 547.4 351 76.6
FAN27G3378 Fragaria x ananassa HOM05D006147 ORTHO05D007501 1.4e-153 546.6 360 75.3
vmacro17420 Vaccinium macrocarpon HOM05D006147 ORTHO05D007501 1.4e-153 546.6 376 72.9
QL11p046465 Quercus lobata HOM05D006147 ORTHO05D007501 1.9e-153 546.2 350 76.0
TPR.G28159 Trifolium pratense HOM05D006147 ORTHO05D007501 1.9e-153 546.2 350 75.7
CSS0016386 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 1.2e-152 543.5 302 86.4
CANSAT11G2690 Cannabis sativa HOM05D006147 ORTHO05D007501 2.1e-152 542.7 350 76.6
Sabra09G0095800 Salix brachista HOM05D006147 ORTHO05D007501 3.5e-152 542.0 368 73.4
MD05G1055500 Malus domestica HOM05D006147 ORTHO05D007501 4.6e-152 541.6 350 74.9
CSS0033675 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 7.9e-152 540.8 302 85.8
Medtr4g072040 Medicago truncatula HOM05D006147 ORTHO05D007501 7.9e-152 540.8 352 75.6
AUR62016834 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.0e-151 540.4 347 74.1
SalBow3G3875 Salvia bowleyana HOM05D006147 ORTHO05D007501 1.0e-151 540.4 351 75.8
GSVIVG01024169001 Vitis vinifera HOM05D006147 ORTHO05D007501 1.3e-151 540.0 351 76.1
Ciclev10028728m.g Citrus clementina HOM05D006147 ORTHO05D007501 1.8e-151 539.7 354 75.4
Thecc.02G074800 Theobroma cacao HOM05D006147 ORTHO05D007501 2.3e-151 539.3 349 75.6
ECA233G5423 Erigeron canadensis HOM05D006147 ORTHO05D001140 5.1e-151 538.1 357 74.5
Atru.chr5.3146 Acer truncatum HOM05D006147 ORTHO05D007501 6.7e-151 537.7 348 77.0
Gohir.D02G220700 Gossypium hirsutum HOM05D006147 ORTHO05D007501 6.7e-151 537.7 349 76.8
Ca_20936_v3 Cicer arietinum L. HOM05D006147 ORTHO05D007501 1.5e-150 536.6 360 74.7
MD10G1062800 Malus domestica HOM05D006147 ORTHO05D007501 1.5e-150 536.6 351 75.2
EL10Ac9g21633 Beta vulgaris HOM05D006147 ORTHO05D007501 3.3e-150 535.4 347 75.2
PSO210G6769 Papaver somniferum HOM05D006147 ORTHO05D007501 3.3e-150 535.4 364 71.4
Glyma.11G110000 Glycine max HOM05D006147 ORTHO05D007501 4.3e-150 535.0 352 74.7
Migut.N01278 Erythranthe guttata HOM05D006147 ORTHO05D007501 5.7e-150 534.6 351 74.6
Aqoxy6G02357 Aquilegia oxysepala HOM05D006147 ORTHO05D007501 7.4e-150 534.3 361 72.6
PGR042G0282 Punica granatum HOM05D006147 ORTHO05D007501 9.7e-150 533.9 359 73.3
FAN15G0109 Fragaria x ananassa HOM05D006147 ORTHO05D007501 1.3e-149 533.5 355 74.9
Hund00177 Selenicereus undatus HOM05D006147 ORTHO05D007501 3.7e-149 531.9 325 77.2
A04p16060 Brassica napus HOM05D006147 ORTHO05D007501 1.1e-148 530.4 352 75.0
CiPaw.05G073500 Carya illinoinensis HOM05D006147 ORTHO05D007501 4.1e-148 528.5 303 84.8
Duzib248G0035 Durio zibethinus HOM05D006147 ORTHO05D007501 4.1e-148 528.5 390 69.0
C04p50520 Brassica napus HOM05D006147 ORTHO05D007501 9.0e-148 527.3 343 76.4
AUR62010384 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.2e-147 526.9 385 68.1
Lj3g0027328 Lotus japonicus HOM05D006147 ORTHO05D007501 1.5e-147 526.6 354 74.0
Eucgr.G01732 Eucalyptus grandis HOM05D006147 ORTHO05D007501 2.6e-147 525.8 354 73.7
AT2G21280 Arabidopsis thaliana HOM05D006147 ORTHO05D007501 1.0e-146 523.9 340 75.3
Actinidia02248 Actinidia chinensis HOM05D006147 ORTHO05D007501 3.8e-146 521.9 302 84.1
AL4G10420 Arabidopsis lyrata HOM05D006147 ORTHO05D007501 5.0e-146 521.5 340 74.1
BcaC02g08802 Brassica carinata HOM05D006147 ORTHO05D007501 5.0e-146 521.5 343 75.2
BolC4t26650H Brassica oleracea HOM05D006147 ORTHO05D007501 5.0e-146 521.5 343 75.2
Glyma.12G036900 Glycine max HOM05D006147 ORTHO05D007501 5.0e-146 521.5 305 81.6
arahy.Tifrunner.gnm1.ann1.S6V2XE Arachis hypogaea HOM05D006147 ORTHO05D007501 8.5e-146 520.8 361 71.7
arahy.Tifrunner.gnm1.ann1.JUX7JJ Arachis hypogaea HOM05D006147 ORTHO05D007501 1.4e-145 520.0 361 71.7
Carub.0004s0032 Capsella rubella HOM05D006147 ORTHO05D007501 1.4e-145 520.0 326 77.3
Psat7g138880 Pisum sativum HOM05D006147 ORTHO05D007501 1.4e-145 520.0 303 82.8
Thhalv10000221m.g Eutrema salsugineum HOM05D006147 ORTHO05D007501 1.9e-145 519.6 312 80.8
CsaV3_7G000410 Cucumis sativus L. HOM05D006147 ORTHO05D007501 2.5e-145 519.2 351 73.2
Hund00185 Selenicereus undatus HOM05D006147 ORTHO05D007501 2.5e-145 519.2 311 79.1
Phvul.011G038600 Phaseolus vulgaris HOM05D006147 ORTHO05D007501 3.2e-145 518.8 303 83.2
Manes.04G083100 Manihot esculenta HOM05D006147 ORTHO05D007501 7.2e-145 517.7 303 82.2
ATR0149G025 Amborella trichopoda HOM05D006147 ORTHO05D007501 9.4e-145 517.3 345 75.1
Aa31LG7G15210 Aethionema arabicum HOM05D006147 ORTHO05D007501 1.6e-144 516.5 307 80.1
CARHR112150 Cardamine hirsuta HOM05D006147 ORTHO05D007501 2.7e-144 515.8 312 79.2
Sed0012779 Sechium edule HOM05D006147 ORTHO05D007501 3.6e-144 515.4 350 73.1
Sp4g00470 Schrenkiella parvula HOM05D006147 ORTHO05D007501 1.0e-143 513.8 312 79.5
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 3.0e-143 512.3 326 77.0
THA.LOC104804110 Tarenaya hassleriana HOM05D006147 ORTHO05D007501 8.8e-143 510.8 339 73.5
Haze_02237 Corylus avellana HOM05D006147 ORTHO05D007501 3.1e-140 502.3 397 67.3
Nitab4.5_0001154g0060 Nicotiana tabacum HOM05D006147 ORTHO05D007501 9.1e-140 500.7 317 80.8
Gorai.005G248600 Gossypium raimondii HOM05D006147 ORTHO05D007501 5.5e-137 491.5 316 76.9
Rhsim05G0068100 Rhododendron simsii HOM05D006147 ORTHO05D007501 1.2e-136 490.3 379 66.2
Sc18g0005390 Simmondsia chinensis HOM05D006147 ORTHO05D007501 6.1e-136 488.0 293 81.2
HPP92_002502 Vanilla planifolia HOM05D006147 ORTHO05D007501 4.8e-133 478.4 304 74.0
Os02g0834700 Oryza sativa ssp. japonica HOM05D006147 ORTHO05D007501 2.4e-132 476.1 309 74.1
Lsat_1_v5_gn_8_127980 Lactuca sativa HOM05D006147 ORTHO05D007501 2.0e-131 473.0 363 67.5
DCAR_003686 Daucus carota HOM05D006147 ORTHO05D007501 3.5e-131 472.2 306 75.8
CDE02G0092 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 4.7e-128 461.8 342 67.0
ClCG02G004540 Citrullus lanatus HOM05D006147 ORTHO05D007501 6.3e-125 451.4 351 65.5
Mapoly0021s0030 Marchantia polymorpha HOM05D006147 ORTHO05D007501 5.9e-123 444.9 307 68.7
Pp3c7_11090 Physcomitrium patens HOM05D006147 ORTHO05D007501 1.0e-122 444.1 321 64.5
Pp3c7_11100 Physcomitrium patens HOM05D006147 ORTHO05D007501 1.0e-122 444.1 321 64.5
MELO3C002785.2 Cucumis melo HOM05D006147 ORTHO05D007501 1.9e-121 439.9 300 72.3
SMO146G0042 Selaginella moellendorffii HOM05D006147 ORTHO05D007501 1.0e-119 434.1 302 66.2
PSO170G3006 Papaver somniferum HOM05D006147 ORTHO05D007501 4.8e-117 425.2 363 60.9
Zm00001eb259680 Zea mays HOM05D006147 ORTHO05D007501 5.3e-116 421.8 277 72.6
Cc02_g16890 Coffea canephora HOM05D006147 ORTHO05D007501 6.8e-111 404.8 280 73.6
unitig_899.g15602 Utricularia gibba HOM05D006147 ORTHO05D007501 2.9e-106 389.4 280 68.6
Dinv41999 Davidia involucrata HOM05D006147 ORTHO05D007501 2.1e-104 383.3 249 77.5
Cre05.g233305 Chlamydomonas reinhardtii HOM05D006147 ORTHO05D007501 4.0e-95 352.4 362 50.0
Nitab4.5_0001370g0020 Nicotiana tabacum HOM05D006147 ORTHO05D007501 2.0e-91 340.1 184 89.7
MCO05G212 Micromonas commoda HOM05D006147 ORTHO05D007501 1.0e-90 337.8 306 52.3
SGA_v2.0_scaffold80G25875 Striga asiatica HOM05D006147 ORTHO05D007501 1.1e-87 327.8 351 52.4
AUR62040654 Chenopodium quinoa HOM05D006147 ORTHO05D007501 6.8e-87 325.1 378 50.0
Nn6g32256 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.3e-85 320.9 243 69.5
MCO16G248 Micromonas commoda HOM05D006147 ORTHO05D007501 8.9e-79 298.1 310 48.7
FvH4_2g10480 Fragaria vesca HOM05D006147 ORTHO05D007501 1.2e-78 297.7 226 66.4
PRCOL_00000238 Prasinoderma coloniale HOM05D006147 ORTHO05D007501 5.8e-78 295.4 239 59.4
arahy.Tifrunner.gnm1.ann1.B04QBU Arachis hypogaea HOM05D006147 ORTHO05D007501 3.1e-71 273.1 205 68.3
MELO3C028749.2 Cucumis melo HOM05D006147 ORTHO05D007501 1.9e-65 253.8 247 57.9
Nn4g26316 Nelumbo nucifera HOM05D006147 ORTHO05D007501 4.6e-59 232.6 124 85.5
Nn6g32490 Nelumbo nucifera HOM05D006147 ORTHO05D007501 4.6e-59 232.6 124 85.5
C09p25880 Brassica napus HOM05D006147 ORTHO05D007501 4.5e-54 216.1 122 79.5
BolC9t55495H Brassica oleracea HOM05D006147 ORTHO05D007501 1.3e-53 214.5 122 78.7
arahy.Tifrunner.gnm1.ann1.KZ1FWN Arachis hypogaea HOM05D006147 ORTHO05D007501 1.4e-52 211.1 182 63.7
arahy.Tifrunner.gnm1.ann1.63XKYH Arachis hypogaea HOM05D006147 ORTHO05D007501 1.6e-51 207.6 148 73.6
SEGI_33639 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 3.7e-40 169.9 103 72.8
Pp3s34_200 Physcomitrium patens HOM05D006147 ORTHO05D007501 2.9e-37 160.2 308 31.8
CDE04G1860 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 3.2e-36 156.8 298 39.3
BolC2t08257H Brassica oleracea HOM05D006147 ORTHO05D007501 1.0e-34 151.8 138 60.1
Cc02_g16880 Coffea canephora HOM05D006147 ORTHO05D007501 8.7e-34 148.7 80 88.8
BcaB08g34979 Brassica carinata HOM05D006147 ORTHO05D007501 5.7e-33 146.0 144 57.6
BraA07t28491Z Brassica rapa HOM05D006147 ORTHO05D007501 3.7e-32 143.3 101 70.3
BcaC03g14677 Brassica carinata HOM05D006147 ORTHO05D007501 4.5e-30 136.3 117 63.2
arahy.Tifrunner.gnm1.ann1.PBTS15 Arachis hypogaea HOM05D006147 ORTHO05D007501 7.2e-28 129.0 185 41.6
A07p07030 Brassica napus HOM05D006147 ORTHO05D007501 1.1e-25 121.7 101 63.4
arahy.Tifrunner.gnm1.ann1.UB8UIZ Arachis hypogaea HOM05D006147 ORTHO05D007501 2.2e-24 117.5 110 56.4
C02p21180 Brassica napus HOM05D006147 ORTHO05D007501 1.8e-23 114.4 71 70.4
C02p21170 Brassica napus HOM05D006147 ORTHO05D007501 9.1e-23 112.1 114 55.3
arahy.Tifrunner.gnm1.ann1.U5A9T5 Arachis hypogaea HOM05D000321 ORTHO05D000204 1.8e-18 97.8 181 37.6
Duzib132G0670 Durio zibethinus HOM05D006147 ORTHO05D007501 7.4e-17 92.4 129 43.4
SEGI_01868 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 6.5e-13 79.3 64 60.9
MBI05_g17912_MAGBIO Magnolia biondii HOM05D006147 ORTHO05D007501 1.1e-12 78.6 46 80.4
MELO3C013418.2 Cucumis melo HOM05D006147 ORTHO05D007501 6.3e-08 62.8 59 57.6
BraA03t15233Z Brassica rapa HOM05D001625 ORTHO05D008114 9.1e-07 58.9 233 25.3
VMungo1309G1770 Vigna mungo HOM05D001625 ORTHO05D008114 1.2e-06 58.5 247 26.7
Lj1g0008117 Lotus japonicus HOM05D001625 ORTHO05D008114 2.6e-06 57.4 218 25.2
A03p61940 Brassica napus HOM05D001625 ORTHO05D008114 3.5e-06 57.0 225 25.3
Medtr3g101500 Medicago truncatula HOM05D001625 ORTHO05D008114 7.7e-06 55.8 223 24.7
Psat5g077160 Pisum sativum HOM05D001625 ORTHO05D008114 7.7e-06 55.8 230 25.2


User provided reference genes

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