Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 8.0e-178 627.1 342 100.0
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 3.1e-129 465.7 283 94.3
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 2.6e-128 462.6 288 91.7
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 3.4e-128 462.2 283 93.3
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 1.1e-126 457.2 298 87.2
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 7.3e-123 444.5 283 89.4
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 5.1e-116 421.8 288 81.9
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 3.4e-112 409.1 283 82.7
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 5.5e-110 401.7 289 79.6
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 7.1e-110 401.4 289 77.5
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 7.1e-110 401.4 285 82.5
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 2.1e-109 399.8 283 79.2
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 1.0e-108 397.5 285 80.0
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.3e-108 397.1 285 78.6
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 1.8e-108 396.7 285 78.6
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 6.7e-108 394.8 287 79.8
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 1.1e-107 394.0 286 79.7
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 1.9e-107 393.3 293 76.8
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 2.5e-107 392.9 285 78.6
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 3.3e-107 392.5 285 78.2
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 5.6e-107 391.7 284 79.6
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 9.6e-107 391.0 287 78.0
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 2.1e-106 389.8 283 78.4
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 2.8e-106 389.4 284 79.9
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 3.7e-106 389.0 285 79.3
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 4.8e-106 388.7 283 79.5
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 8.2e-106 387.9 293 76.5
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 1.4e-105 387.1 235 78.7
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 1.2e-104 384.0 283 77.4
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 1.5e-104 383.6 271 71.2
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 2.0e-104 383.3 283 76.3
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 2.0e-104 383.3 285 76.5
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 2.6e-104 382.9 283 76.3
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 2.6e-104 382.9 285 76.8
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 3.4e-104 382.5 285 77.9
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 3.4e-104 382.5 285 77.9
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 4.5e-104 382.1 234 77.8
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 1.0e-103 380.9 289 77.5
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 1.7e-103 380.2 314 71.7
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 1.4e-102 377.1 235 76.6
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 1.4e-102 377.1 285 77.9
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 2.5e-102 376.3 285 75.4
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 3.2e-102 375.9 285 75.4
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 3.2e-102 375.9 285 75.4
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 7.1e-102 374.8 285 74.4
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.2e-101 374.0 285 75.8
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 4.6e-101 372.1 285 73.7
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 1.8e-100 370.2 236 76.3
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 3.0e-100 369.4 285 77.2
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 3.0e-100 369.4 285 74.7
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 3.0e-100 369.4 306 72.2
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 5.1e-100 368.6 246 73.2
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 5.1e-100 368.6 225 77.8
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 6.7e-100 368.2 285 75.1
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 6.7e-100 368.2 284 76.4
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 6.7e-100 368.2 235 76.6
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.1e-99 367.5 284 76.1
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 1.5e-99 367.1 287 77.0
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 2.5e-99 366.3 236 76.3
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 4.3e-99 365.5 289 73.4
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 7.4e-99 364.8 305 71.1
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 2.8e-98 362.8 291 74.9
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 2.8e-98 362.8 310 69.7
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 6.3e-98 361.7 236 73.3
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 6.3e-98 361.7 233 72.5
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 1.4e-97 360.5 237 73.4
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 1.8e-97 360.1 227 74.9
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 1.8e-97 360.1 240 73.3
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 2.4e-97 359.8 236 72.9
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 1.5e-96 357.1 290 72.1
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 1.5e-96 357.1 233 73.4
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 2.0e-96 356.7 284 72.5
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 5.9e-96 355.1 226 74.3
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 1.3e-95 354.0 299 70.2
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.3e-95 354.0 235 72.8
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 3.8e-95 352.4 227 74.9
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 6.5e-95 351.7 289 72.0
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 8.5e-95 351.3 209 78.9
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.4e-94 350.5 283 73.1
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.4e-94 350.5 286 71.0
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 1.4e-94 350.5 339 63.7
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 1.9e-94 350.1 289 71.6
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 2.5e-94 349.7 236 73.3
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 4.2e-94 349.0 237 70.9
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 1.2e-93 347.4 285 73.3
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 1.6e-93 347.1 270 77.4
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 2.1e-93 346.7 224 73.7
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 3.6e-93 345.9 209 79.9
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 5.1e-92 342.0 234 70.5
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 6.7e-92 341.7 271 64.6
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 6.7e-92 341.7 283 72.4
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 4.3e-91 339.0 229 88.2
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 2.2e-90 336.7 236 70.3
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 8.2e-90 334.7 256 66.8
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 1.8e-89 333.6 291 68.4
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 3.1e-89 332.8 285 68.1
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 4.1e-89 332.4 227 70.9
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 5.3e-89 332.0 284 69.4
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 1.5e-88 330.5 238 69.3
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 1.5e-88 330.5 236 68.6
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 2.6e-88 329.7 239 70.7
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 2.6e-88 329.7 227 70.5
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 2.6e-88 329.7 284 68.3
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 8.5e-87 324.7 237 67.9
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 5.5e-86 322.0 240 68.8
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 5.5e-86 322.0 239 68.6
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 9.4e-86 321.2 235 67.7
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 9.4e-86 321.2 289 68.9
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.2e-85 320.9 287 68.6
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 1.2e-85 320.9 234 67.5
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 4.7e-85 318.9 239 68.6
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 5.1e-84 315.5 220 69.5
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 1.5e-83 313.9 225 68.0
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 1.3e-82 310.8 243 68.3
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 1.0e-79 301.2 296 62.8
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 6.5e-79 298.5 285 67.7
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 1.4e-78 297.4 226 67.3
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 1.9e-78 297.0 231 77.5
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 8.8e-76 288.1 232 76.7
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 2.2e-74 283.5 244 73.8
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 2.4e-73 280.0 194 73.7
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 3.8e-71 272.7 285 63.9
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 5.0e-71 272.3 236 61.0
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 1.6e-69 267.3 194 70.6
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 1.2e-67 261.2 240 58.3
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 1.3e-66 257.7 218 61.9
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 2.2e-66 256.9 236 61.0
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 7.0e-65 251.9 227 60.8
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 6.1e-61 238.8 234 54.7
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 3.5e-56 223.0 198 58.6
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 3.3e-54 216.5 242 50.8
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 9.5e-46 188.3 142 62.7
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 1.4e-41 174.5 245 58.4
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 3.2e-41 173.3 132 67.4
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 6.0e-40 169.1 250 41.6
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 4.7e-37 159.5 243 42.0
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.0e-31 141.7 245 37.6
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 3.9e-31 139.8 235 37.9
PGR083G0898 Punica granatum HOM05D004124 ORTHO05D004779 1.7e-26 124.4 183 44.3
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 6.4e-26 122.5 230 38.7
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.4e-25 121.3 225 35.6
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 2.4e-25 120.6 227 37.9
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 2.4e-25 120.6 229 38.4
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 9.2e-25 118.6 223 36.3
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 9.2e-25 118.6 232 36.6
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 2.7e-24 117.1 53 100.0
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 6.6e-23 112.5 238 35.3
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 6.6e-23 112.5 228 36.8
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 8.6e-23 112.1 237 34.6
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 1.5e-22 111.3 237 36.3
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 1.6e-21 107.8 227 36.1
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 2.1e-21 107.5 233 35.6
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 2.8e-21 107.1 246 35.4
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 6.2e-21 105.9 250 32.4
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 8.1e-21 105.5 237 34.6
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 2.4e-20 104.0 230 34.3
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 5.8e-19 99.4 224 34.8
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 8.4e-18 95.5 206 34.0
PGR083G1960 Punica granatum HOM05D000500 ORTHO05D000367 5.4e-17 92.8 54 75.9
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 3.5e-16 90.1 46 87.0
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 3.3e-14 83.6 241 29.9
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 4.0e-12 76.6 170 37.6
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 5.3e-12 76.3 50 70.0
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 5.3e-12 76.3 165 35.8
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 9.0e-12 75.5 246 28.9
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 1.2e-11 75.1 172 34.3
Eucgr.L03169 Eucalyptus grandis HOM05D004124 ORTHO05D004779 2.0e-11 74.3 103 43.7
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 4.9e-10 69.7 259 28.2
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 1.4e-09 68.2 165 32.1
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 2.1e-08 64.3 50 54.0
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 3.5e-08 63.5 34 67.6
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.7e-07 61.2 30 76.7
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 3.9e-07 60.1 61 45.9
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 6.6e-07 59.3 169 32.5
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 2.5e-06 57.4 51 49.0
VMungo1383G0643 Vigna mungo HOM05D004124 ORTHO05D004779 3.3e-06 57.0 54 46.3


User provided reference genes

Program Settings