Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G163.3 Capsicum annuum HOM05D005688 ORTHO05D006630 5.1e-204 714.1 351 100.0
Nitab4.5_0002277g0010 Nicotiana tabacum HOM05D005688 ORTHO05D006630 1.1e-153 547.0 317 85.2
Nitab4.5_0000251g0050 Nicotiana tabacum HOM05D005688 ORTHO05D006630 5.3e-153 544.7 320 85.0
PGSC0003DMG400010801 Solanum tuberosum HOM05D005688 ORTHO05D006630 2.7e-152 542.3 317 85.8
Sopen05g011970 Solanum pennellii HOM05D005688 ORTHO05D006630 1.0e-151 540.4 317 85.2
Solyc05g015980.3 Solanum lycopersicum HOM05D005688 ORTHO05D006630 5.0e-151 538.1 317 84.9
Dinv17591 Davidia involucrata HOM05D005688 ORTHO05D006630 2.9e-135 485.7 322 75.8
Hma1.2p1_0065F.1_g035040 Hydrangea macrophylla HOM05D005688 ORTHO05D006630 4.3e-134 481.9 329 74.8
Lj6A830T28 Lonicera japonica HOM05D005688 ORTHO05D006630 6.1e-133 478.0 317 76.3
Peaxi162Scf00128g01523 Petunia axillaris HOM05D005688 ORTHO05D006630 6.1e-133 478.0 319 75.9
MSTRG.481 Avicennia marina HOM05D005688 ORTHO05D006630 3.7e-130 468.8 317 74.1
Dinv11693 Davidia involucrata HOM05D005688 ORTHO05D006630 3.7e-130 468.8 323 73.7
CSS0038243 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 3.5e-128 462.2 321 72.0
CSS0036763 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 1.0e-127 460.7 319 74.0
Migut.E00005 Erythranthe guttata HOM05D005688 ORTHO05D006630 1.3e-127 460.3 318 73.6
Actinidia09624 Actinidia chinensis HOM05D005688 ORTHO05D006630 5.0e-127 458.4 318 73.0
SalBow2G0527 Salvia bowleyana HOM05D005688 ORTHO05D006630 6.6e-127 458.0 314 72.9
Ciclev10032000m.g Citrus clementina HOM05D005688 ORTHO05D006630 1.2e-125 453.8 325 70.8
Lsat_1_v5_gn_4_280 Lactuca sativa HOM05D005688 ORTHO05D006630 2.8e-125 452.6 329 69.6
Thecc.02G201300 Theobroma cacao HOM05D005688 ORTHO05D006630 2.8e-125 452.6 324 69.4
Duzib251G0174 Durio zibethinus HOM05D005688 ORTHO05D006630 1.4e-124 450.3 324 68.8
DCAR_024659 Daucus carota HOM05D005688 ORTHO05D006630 1.2e-123 447.2 318 71.7
Gohir.A04G100300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 2.6e-123 446.0 324 68.5
vmacro01046 Vaccinium macrocarpon HOM05D005688 ORTHO05D006630 5.8e-123 444.9 347 65.7
Gohir.D04G139300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 2.2e-122 443.0 324 68.2
HanXRQChr17g0568911 Helianthus annuus HOM05D005688 ORTHO05D006630 2.9e-122 442.6 318 70.8
Gorai.012G124400 Gossypium raimondii HOM05D005688 ORTHO05D006630 3.7e-122 442.2 324 68.5
ECA234G1377 Erigeron canadensis HOM05D005688 ORTHO05D006630 4.9e-122 441.8 322 69.6
Rhsim12G0023600 Rhododendron simsii HOM05D005688 ORTHO05D006630 6.4e-122 441.4 332 67.5
FvH4_4g23370 Fragaria vesca HOM05D005688 ORTHO05D006630 1.1e-121 440.7 334 66.8
FAN12G1631 Fragaria x ananassa HOM05D005688 ORTHO05D006630 1.1e-121 440.7 334 66.8
C09p63990 Brassica napus HOM05D000918 ORTHO05D006630 1.4e-121 440.3 324 67.0
FAN07G0693 Fragaria x ananassa HOM05D005688 ORTHO05D006630 1.4e-121 440.3 335 66.9
TAR629G3099 Trochodendron aralioides HOM05D005688 ORTHO05D006630 1.4e-121 440.3 327 68.2
Manes.12G008200 Manihot esculenta HOM05D005688 ORTHO05D006630 3.2e-121 439.1 334 68.3
Haze_12451 Corylus avellana HOM05D005688 ORTHO05D006630 4.1e-121 438.7 328 69.8
TWI75G1512 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 7.1e-121 438.0 326 70.6
FAN17G3098 Fragaria x ananassa HOM05D005688 ORTHO05D006630 9.2e-121 437.6 335 66.3
MD16G1123300 Malus domestica HOM05D005688 ORTHO05D006630 1.6e-120 436.8 338 66.9
RcHm_v2.0_Chr4g0429761 Rosa chinensis HOM05D005688 ORTHO05D006630 1.6e-120 436.8 327 69.4
CARHR200370 Cardamine hirsuta HOM05D005688 ORTHO05D006630 2.1e-120 436.4 326 67.2
Prupe.1G222300 Prunus persica HOM05D005688 ORTHO05D006630 2.1e-120 436.4 340 65.6
BraA03t09920Z Brassica rapa HOM05D000918 ORTHO05D006630 2.7e-120 436.0 328 66.5
TWI36G1544 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 2.7e-120 436.0 326 70.6
BolC9t59237H Brassica oleracea HOM05D005688 ORTHO05D006630 3.5e-120 435.6 324 66.4
ClCG07G015390 Citrullus lanatus HOM05D005688 ORTHO05D006630 3.5e-120 435.6 372 61.8
CiPaw.05G106800 Carya illinoinensis HOM05D005688 ORTHO05D006630 7.8e-120 434.5 329 68.1
Cfa009390 Carpinus fangiana HOM05D005688 ORTHO05D006630 1.3e-119 433.7 331 67.4
Sc04g0010310 Simmondsia chinensis HOM05D005688 ORTHO05D006630 1.3e-119 433.7 326 66.9
A03p05810 Brassica napus HOM05D000918 ORTHO05D000791 1.7e-119 433.3 328 66.2
Potri.003G168300 Populus trichocarpa HOM05D005688 ORTHO05D006630 1.7e-119 433.3 329 67.8
Aa31LG3G14570 Aethionema arabicum HOM05D005688 ORTHO05D006630 2.3e-119 433.0 324 67.3
Potri.001G059700 Populus trichocarpa HOM05D005688 ORTHO05D006630 2.3e-119 433.0 329 67.8
Thhalv10013944m.g Eutrema salsugineum HOM05D005688 ORTHO05D006630 3.0e-119 432.6 328 66.8
AL6G23700 Arabidopsis lyrata HOM05D005688 ORTHO05D006630 3.9e-119 432.2 326 66.6
C03p06760 Brassica napus HOM05D000918 ORTHO05D006630 3.9e-119 432.2 330 66.4
BolC3t13183H Brassica oleracea HOM05D000918 ORTHO05D006630 3.9e-119 432.2 330 66.4
Carub.0006s1127 Capsella rubella HOM05D005688 ORTHO05D006630 6.6e-119 431.4 325 66.2
QL03p051598 Quercus lobata HOM05D005688 ORTHO05D006630 6.6e-119 431.4 336 67.6
THA.LOC104810209 Tarenaya hassleriana HOM05D005688 ORTHO05D006630 1.1e-118 430.6 327 67.3
A10p25100 Brassica napus HOM05D000918 ORTHO05D006630 1.5e-118 430.3 325 65.5
COL.COLO4_27347 Corchorus olitorius HOM05D005688 ORTHO05D006630 1.5e-118 430.3 327 67.9
MELO3C017746.2 Cucumis melo HOM05D005688 ORTHO05D006630 1.5e-118 430.3 334 66.5
PGR102G0765 Punica granatum HOM05D005688 ORTHO05D006630 1.9e-118 429.9 326 66.6
CsaV3_4G002970 Cucumis sativus L. HOM05D005688 ORTHO05D006630 2.5e-118 429.5 337 65.6
AT5G13100 Arabidopsis thaliana HOM05D005688 ORTHO05D006630 3.3e-118 429.1 326 66.3
Sed0014060 Sechium edule HOM05D005688 ORTHO05D006630 5.6e-118 428.3 337 66.2
BraA10t44572Z Brassica rapa HOM05D005688 ORTHO05D006630 7.3e-118 427.9 326 65.3
Lalb_Chr17g0336391 Lupinus albus HOM05D005688 ORTHO05D006630 9.5e-118 427.6 335 66.0
Sp6g30880 Schrenkiella parvula HOM05D005688 ORTHO05D006630 1.6e-117 426.8 329 66.0
Phvul.008G017000 Phaseolus vulgaris HOM05D005688 ORTHO05D006630 2.1e-117 426.4 337 68.5
CANSAT80G0816 Cannabis sativa HOM05D005688 ORTHO05D006630 3.6e-117 425.6 326 65.6
Duzib248G1308 Durio zibethinus HOM05D005688 ORTHO05D006630 6.2e-117 424.9 326 66.3
Actinidia39795 Actinidia chinensis HOM05D005688 ORTHO05D006630 1.8e-116 423.3 300 72.0
Sed0011472 Sechium edule HOM05D005688 ORTHO05D006630 1.8e-116 423.3 351 62.7
Glyma.18G284500 Glycine max HOM05D005688 ORTHO05D006630 2.3e-116 422.9 336 67.3
Sabra01G0042800 Salix brachista HOM05D005688 ORTHO05D006630 3.1e-116 422.5 324 69.1
Lalb_Chr10g0092021 Lupinus albus HOM05D005688 ORTHO05D006630 4.0e-116 422.2 334 65.9
TAR371G0171 Trochodendron aralioides HOM05D005688 ORTHO05D006630 6.8e-116 421.4 324 67.3
Hund06107 Selenicereus undatus HOM05D005688 ORTHO05D006630 2.0e-115 419.9 329 66.0
Glyma.02G097000 Glycine max HOM05D005688 ORTHO05D006630 5.8e-115 418.3 338 66.6
Ca_07133_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 7.6e-115 417.9 336 66.7
Ca_28122_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 7.6e-115 417.9 336 66.7
unitig_26.g10416 Utricularia gibba HOM05D005688 ORTHO05D006630 9.9e-115 417.5 320 67.5
Aqoxy3G01629 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 1.2e-112 410.6 328 65.9
arahy.Tifrunner.gnm1.ann1.97E8EB Arachis hypogaea HOM05D005688 ORTHO05D006630 1.6e-112 410.2 348 64.4
arahy.Tifrunner.gnm1.ann1.N9VQT0 Arachis hypogaea HOM05D005688 ORTHO05D006630 1.6e-112 410.2 348 64.4
Psat3g187080 Pisum sativum HOM05D005688 ORTHO05D006630 1.6e-112 410.2 329 65.7
Lj1g0000862 Lotus japonicus HOM05D005688 ORTHO05D006630 6.0e-112 408.3 347 62.5
Medtr7g022390 Medicago truncatula HOM05D005688 ORTHO05D006630 6.0e-112 408.3 331 65.3
Nn3g16394 Nelumbo nucifera HOM05D005688 ORTHO05D006630 2.3e-111 406.4 327 65.1
AUR62028899 Chenopodium quinoa HOM05D005688 ORTHO05D006630 2.5e-110 402.9 329 63.2
Eucgr.B03525 Eucalyptus grandis HOM05D005688 ORTHO05D006630 1.6e-109 400.2 334 63.2
TPR.G2946 Trifolium pratense HOM05D005688 ORTHO05D006630 8.1e-109 397.9 320 66.6
BcaB01g05377 Brassica carinata HOM05D005688 ORTHO05D006630 1.1e-108 397.5 330 62.4
MBI07_g18747_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 1.1e-108 397.5 330 63.3
PSO017G1106 Papaver somniferum HOM05D005688 ORTHO05D006630 1.4e-108 397.1 330 64.5
CDE05G3530 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 4.0e-108 395.6 324 62.7
PSO478G0501 Papaver somniferum HOM05D005688 ORTHO05D006630 4.0e-108 395.6 333 64.0
EL10Ac6g13540 Beta vulgaris HOM05D005688 ORTHO05D006630 6.8e-108 394.8 333 61.6
Sabra03G0123400 Salix brachista HOM05D005688 ORTHO05D006630 6.8e-108 394.8 402 54.2
CDE05G2516 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 9.9e-107 391.0 324 62.0
Ah.03g135940 Amaranthus hybridus HOM05D005688 ORTHO05D006630 3.6e-101 372.5 338 59.8
Atru.chr11.2370 Acer truncatum HOM05D005688 ORTHO05D006630 1.1e-100 370.9 287 68.3
HPP92_011533 Vanilla planifolia HOM05D005688 ORTHO05D006630 1.8e-100 370.2 342 59.1
CiPaw.06G105500 Carya illinoinensis HOM05D005688 ORTHO05D006630 4.0e-100 369.0 290 66.6
Manes.13G008600 Manihot esculenta HOM05D005688 ORTHO05D006630 2.2e-98 363.2 292 66.8
Zm00001eb127020 Zea mays HOM05D005688 ORTHO05D006630 1.1e-97 360.9 321 59.2
Os01g0102500 Oryza sativa ssp. japonica HOM05D005688 ORTHO05D006630 1.4e-97 360.5 317 58.0
ATR0582G145 Amborella trichopoda HOM05D005688 ORTHO05D006630 2.3e-95 353.2 321 57.6
Ah.02g130750 Amaranthus hybridus HOM05D005688 ORTHO05D006630 5.1e-95 352.1 326 57.1
SEGI_28374 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 2.4e-92 343.2 295 61.0
SEGI_34677 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 2.0e-91 340.1 271 61.6
AUR62005654 Chenopodium quinoa HOM05D005688 ORTHO05D006630 3.3e-86 322.8 198 79.3
BcaC04g19152 Brassica carinata HOM05D005688 ORTHO05D006630 3.1e-84 316.2 321 54.2
AagrBONN_evm.TU.Sc2ySwM_340.298 Anthoceros agrestis HOM05D005688 ORTHO05D006630 6.9e-84 315.1 266 57.9
CBR_g40425 Chara braunii HOM05D005688 ORTHO05D006630 1.2e-83 314.3 272 59.2
ATR0579G080 Amborella trichopoda HOM05D005688 ORTHO05D006630 7.6e-83 311.6 284 55.6
Mapoly0015s0197 Marchantia polymorpha HOM05D005688 ORTHO05D006630 1.0e-82 311.2 313 54.6
Cc11_g17240 Coffea canephora HOM05D005688 ORTHO05D006630 2.9e-82 309.7 164 89.6
Cpa.g.sc99.54 Carica papaya HOM05D005688 ORTHO05D006630 2.5e-81 306.6 164 88.4
GSVIVG01000906001 Vitis vinifera HOM05D005688 ORTHO05D006630 4.2e-81 305.8 164 87.8
MBI04_g07882_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 2.1e-80 303.5 264 57.2
HPP92_011539 Vanilla planifolia HOM05D005688 ORTHO05D006630 7.9e-80 301.6 327 52.9
SMO367G0614 Selaginella moellendorffii HOM05D005688 ORTHO05D006630 3.9e-79 299.3 266 54.9
Oeu012651.1 Olea europaea HOM05D005688 ORTHO05D006630 1.4e-60 237.7 197 60.9
unitig_8.g2899 Utricularia gibba HOM05D005688 ORTHO05D006630 2.7e-56 223.4 123 83.7
unitig_8.g2900 Utricularia gibba HOM05D005688 ORTHO05D006630 1.1e-52 211.5 180 61.1
Actinidia30626 Actinidia chinensis HOM05D001095 ORTHO05D000976 2.3e-47 193.7 183 56.8
Actinidia08051 Actinidia chinensis HOM05D005688 ORTHO05D006630 1.4e-44 184.5 96 87.5
Actinidia34019 Actinidia chinensis HOM05D005688 ORTHO05D006630 1.7e-34 151.0 318 36.8
Actinidia08052 Actinidia chinensis HOM05D005688 ORTHO05D006630 2.5e-33 147.1 157 53.5
GSVIVG01010535001 Vitis vinifera HOM05D005688 ORTHO05D006630 4.7e-32 142.9 101 75.2
Cpa.g.sc99.53 Carica papaya HOM05D005688 ORTHO05D006630 1.0e-31 141.7 143 55.9
VMungo1215G2942 Vigna mungo HOM05D005688 ORTHO05D006630 6.3e-29 132.5 91 69.2
Nn4g22254 Nelumbo nucifera HOM05D005688 ORTHO05D006630 4.1e-28 129.8 70 85.7
Aqoxy1G03766 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 1.0e-26 125.2 160 48.8
VMungo1383G3355 Vigna mungo HOM05D005688 ORTHO05D006630 5.7e-22 109.4 237 37.1
Ah.02g130760 Amaranthus hybridus HOM05D005688 ORTHO05D006630 3.4e-14 83.6 124 38.7
QL06p005212 Quercus lobata HOM05D005688 ORTHO05D006630 2.9e-13 80.5 43 83.7
BcaB03g14943 Brassica carinata HOM05D005688 ORTHO05D006630 3.2e-12 77.0 43 76.7
BcaB07g33260 Brassica carinata HOM05D005688 ORTHO05D006630 5.4e-12 76.3 43 76.7
Actinidia05457 Actinidia chinensis HOM05D005688 ORTHO05D054920 2.3e-07 60.8 72 50.0


User provided reference genes

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