Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1627.3 Capsicum annuum HOM05D002370 ORTHO05D003878 2.7e-250 868.2 448 100.0
PGSC0003DMG401025733 Solanum tuberosum HOM05D002370 ORTHO05D003878 1.5e-187 659.8 559 68.5
Solyc01g106770.4 Solanum lycopersicum HOM05D002370 ORTHO05D003878 1.2e-186 656.8 559 68.2
Sopen01g049080 Solanum pennellii HOM05D002370 ORTHO05D003878 1.2e-186 656.8 559 68.2
Peaxi162Scf00016g03243 Petunia axillaris HOM05D002370 ORTHO05D003878 1.3e-183 646.7 559 67.6
Nitab4.5_0000772g0070 Nicotiana tabacum HOM05D002370 ORTHO05D003878 6.6e-180 634.4 559 66.5
Nitab4.5_0010974g0020 Nicotiana tabacum HOM05D002370 ORTHO05D003878 3.3e-179 632.1 559 66.4
CAN.G1164.1 Capsicum annuum HOM05D002370 ORTHO05D003878 6.3e-175 617.8 486 72.8
CAN.G1627.7 Capsicum annuum HOM05D002370 ORTHO05D003878 4.0e-161 572.0 570 61.8
Dinv09531 Davidia involucrata HOM05D002370 ORTHO05D003878 2.4e-158 562.8 561 59.9
Lj5C222G6 Lonicera japonica HOM05D002370 ORTHO05D003878 1.0e-156 557.4 562 58.5
CSS0028039 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 8.3e-151 537.7 562 57.5
Migut.B00477 Erythranthe guttata HOM05D002370 ORTHO05D003878 4.1e-150 535.4 561 57.4
DCAR_003604 Daucus carota HOM05D002370 ORTHO05D003878 5.4e-150 535.0 561 57.4
Rhsim11G0149700 Rhododendron simsii HOM05D002370 ORTHO05D003878 5.4e-150 535.0 559 57.1
MELO3C018533.2 Cucumis melo HOM05D002370 ORTHO05D003878 7.8e-149 531.2 554 56.5
MSTRG.16667 Avicennia marina HOM05D002370 ORTHO05D003878 1.3e-148 530.4 561 57.0
Ciclev10027661m.g Citrus clementina HOM05D002370 ORTHO05D003878 1.7e-148 530.0 562 55.5
Gorai.008G019100 Gossypium raimondii HOM05D002370 ORTHO05D003878 3.9e-148 528.9 562 56.0
ECA232G2594 Erigeron canadensis HOM05D002370 ORTHO05D003878 1.5e-147 526.9 562 56.9
ClCG02G007160 Citrullus lanatus HOM05D002370 ORTHO05D003878 1.9e-147 526.6 559 55.6
Gohir.D12G018800 Gossypium hirsutum HOM05D002370 ORTHO05D003878 4.3e-147 525.4 562 55.9
Thecc.02G120900 Theobroma cacao HOM05D002370 ORTHO05D003878 4.3e-147 525.4 562 56.0
CsaV3_7G007670 Cucumis sativus L. HOM05D002370 ORTHO05D003878 1.2e-146 523.9 559 55.3
DCAR_021938 Daucus carota HOM05D002370 ORTHO05D003878 1.6e-146 523.5 561 55.3
Gohir.A12G018200 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.6e-146 523.5 541 56.7
Oeu028915.2 Olea europaea HOM05D002370 ORTHO05D003878 2.8e-146 522.7 561 57.2
Atru.chr4.144 Acer truncatum HOM05D002370 ORTHO05D003878 4.7e-146 521.9 560 55.0
Hma1.2p1_1051F.1_g252210 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 6.2e-146 521.5 562 56.6
PSO541G1630 Papaver somniferum HOM05D002370 ORTHO05D003878 6.2e-146 521.5 567 55.9
TWI59G1328 Tripterygium wilfordii HOM05D002370 ORTHO05D003878 8.1e-146 521.2 559 55.3
Gohir.D01G009100 Gossypium hirsutum HOM05D002370 ORTHO05D003878 2.4e-145 519.6 562 55.7
Gorai.002G011200 Gossypium raimondii HOM05D002370 ORTHO05D003878 2.4e-145 519.6 562 55.7
Nn5g30713 Nelumbo nucifera HOM05D002370 ORTHO05D003878 3.1e-145 519.2 542 56.8
Atru.chr4.155 Acer truncatum HOM05D002370 ORTHO05D003878 1.5e-144 516.9 560 54.6
COL.COLO4_32473 Corchorus olitorius HOM05D002370 ORTHO05D003878 7.6e-144 514.6 499 60.5
Duzib132G1084 Durio zibethinus HOM05D002370 ORTHO05D003878 7.6e-144 514.6 541 56.0
arahy.Tifrunner.gnm1.ann1.3J1H0B Arachis hypogaea HOM05D002370 ORTHO05D003878 1.3e-143 513.8 561 54.4
arahy.Tifrunner.gnm1.ann1.NYP183 Arachis hypogaea HOM05D002370 ORTHO05D003878 1.3e-143 513.8 561 54.4
Sed0018886 Sechium edule HOM05D002370 ORTHO05D003878 1.7e-143 513.5 563 55.1
TAR381G0773 Trochodendron aralioides HOM05D002370 ORTHO05D003878 2.2e-143 513.1 561 55.3
Glyma.11G002600 Glycine max HOM05D002370 ORTHO05D003878 4.9e-143 511.9 562 54.3
Potri.001G289200 Populus trichocarpa HOM05D002370 ORTHO05D003878 6.4e-143 511.5 563 55.4
Prupe.8G151300 Prunus persica HOM05D002370 ORTHO05D003878 6.4e-143 511.5 562 54.6
RcHm_v2.0_Chr6g0247951 Rosa chinensis HOM05D002370 ORTHO05D003878 8.4e-143 511.1 563 55.1
CiPaw.06G163300 Carya illinoinensis HOM05D002370 ORTHO05D003878 1.4e-142 510.4 563 54.2
Manes.07G052660 Manihot esculenta HOM05D002370 ORTHO05D003878 2.4e-142 509.6 562 54.3
CiPaw.05G021600 Carya illinoinensis HOM05D002370 ORTHO05D003878 4.2e-142 508.8 570 52.8
Glyma.01G241300 Glycine max HOM05D002370 ORTHO05D003878 7.1e-142 508.1 560 54.3
CAN.G1164.4 Capsicum annuum HOM05D002370 ORTHO05D003878 9.2e-142 507.7 464 65.3
FAN20G2522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 9.2e-142 507.7 562 54.3
FAN27G1380 Fragaria x ananassa HOM05D002370 ORTHO05D003878 1.2e-141 507.3 564 54.1
FAN15G3522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 2.1e-141 506.5 561 54.4
Aqoxy6G01518 Aquilegia oxysepala HOM05D002370 ORTHO05D003878 3.5e-141 505.8 545 55.0
FAN24G1227 Fragaria x ananassa HOM05D002370 ORTHO05D003878 3.5e-141 505.8 562 53.9
VMungo1215G1081 Vigna mungo HOM05D002370 ORTHO05D003878 3.5e-141 505.8 560 53.9
FvH4_2g03080 Fragaria vesca HOM05D002370 ORTHO05D003878 6.0e-141 505.0 560 54.3
MD10G1112000 Malus domestica HOM05D002370 ORTHO05D003878 1.3e-140 503.8 562 53.4
MD05G1107800 Malus domestica HOM05D002370 ORTHO05D003878 2.3e-140 503.1 562 53.4
PSO675G4735 Papaver somniferum HOM05D002370 ORTHO05D003878 3.9e-140 502.3 567 55.0
Phvul.002G049900 Phaseolus vulgaris HOM05D002370 ORTHO05D003878 3.9e-140 502.3 560 53.9
Lj1g0008728 Lotus japonicus HOM05D002370 ORTHO05D003878 6.6e-140 501.5 545 54.7
HPP92_016412 Vanilla planifolia HOM05D002370 ORTHO05D003878 1.1e-139 500.7 559 52.8
THA.LOC104826500 Tarenaya hassleriana HOM05D002370 ORTHO05D003878 1.5e-139 500.4 562 53.9
PSO675G3080 Papaver somniferum HOM05D002370 ORTHO05D003878 3.3e-139 499.2 559 54.2
Actinidia02446 Actinidia chinensis HOM05D002370 ORTHO05D003878 4.3e-139 498.8 521 56.8
Medtr5g005380 Medicago truncatula HOM05D002370 ORTHO05D003878 7.3e-139 498.0 540 54.8
Potri.009G084500 Populus trichocarpa HOM05D002370 ORTHO05D003878 1.2e-138 497.3 563 53.8
Sabra09G0065200 Salix brachista HOM05D002370 ORTHO05D003878 1.6e-138 496.9 563 54.2
TAR625G0605 Trochodendron aralioides HOM05D002370 ORTHO05D003878 2.8e-138 496.1 548 54.9
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 1.4e-137 493.8 599 51.9
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 1.8e-137 493.4 562 53.0
Psat4g229000 Pisum sativum HOM05D002370 ORTHO05D003878 3.1e-137 492.7 540 54.4
CSS0026275 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 1.2e-136 490.7 562 53.0
AUR62027030 Chenopodium quinoa HOM05D002370 ORTHO05D003878 2.0e-136 490.0 559 52.4
TPR.G8301 Trifolium pratense HOM05D002370 ORTHO05D003878 2.6e-136 489.6 540 54.3
Ca_24363_v3 Cicer arietinum L. HOM05D002370 ORTHO05D003878 4.4e-136 488.8 539 54.4
HanXRQChr04g0107251 Helianthus annuus HOM05D002370 ORTHO05D003878 5.8e-136 488.4 562 54.4
Carub.0001s3921 Capsella rubella HOM05D002370 ORTHO05D003878 1.7e-135 486.9 562 52.7
Thhalv10011174m.g Eutrema salsugineum HOM05D002370 ORTHO05D003878 1.7e-135 486.9 562 52.8
Sp1g36890 Schrenkiella parvula HOM05D002370 ORTHO05D003878 1.7e-135 486.9 562 52.7
Lalb_Chr05g0210831 Lupinus albus HOM05D002370 ORTHO05D003878 6.4e-135 485.0 558 51.4
AT1G50030 Arabidopsis thaliana HOM05D002370 ORTHO05D003878 8.4e-135 484.6 562 53.0
AUR62030874 Chenopodium quinoa HOM05D002370 ORTHO05D003878 8.4e-135 484.6 559 52.1
AL1G57600 Arabidopsis lyrata HOM05D002370 ORTHO05D003878 1.1e-134 484.2 562 52.7
Hma1.2p1_0661F.1_g197980 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 4.2e-134 482.3 522 55.9
SalBow6G1889 Salvia bowleyana HOM05D002370 ORTHO05D003878 9.3e-134 481.1 515 56.3
PGR142G4285 Punica granatum HOM05D002370 ORTHO05D003878 7.8e-133 478.0 562 52.1
Eucgr.I02503 Eucalyptus grandis HOM05D002370 ORTHO05D003878 1.0e-132 477.6 561 51.5
HanXRQChr04g0107281 Helianthus annuus HOM05D002370 ORTHO05D003878 1.3e-132 477.2 562 53.4
CDE06G0012 Ceratophyllum demersum HOM05D002370 ORTHO05D003878 2.3e-132 476.5 561 50.6
PSO732G0082 Papaver somniferum HOM05D002370 ORTHO05D003878 1.4e-129 467.2 530 53.4
MD00G1031100 Malus domestica HOM05D002370 ORTHO05D003878 1.8e-129 466.8 562 50.7
BcaC08g43183 Brassica carinata HOM05D002370 ORTHO05D003878 2.4e-129 466.5 564 50.9
BraA05t20943Z Brassica rapa HOM05D002370 ORTHO05D003878 3.1e-129 466.1 562 50.7
BcaB07g33455 Brassica carinata HOM05D002370 ORTHO05D003878 5.3e-129 465.3 562 50.7
A05p20360 Brassica napus HOM05D002370 ORTHO05D003878 5.3e-129 465.3 562 50.7
SGA_v2.0_scaffold519G52682 Striga asiatica HOM05D002370 ORTHO05D003878 5.3e-129 465.3 559 52.2
BraA06t23548Z Brassica rapa HOM05D002370 ORTHO05D003878 6.9e-129 464.9 564 51.1
CARHR040140 Cardamine hirsuta HOM05D002370 ORTHO05D003878 9.0e-129 464.5 562 50.9
Lsat_1_v5_gn_4_143680 Lactuca sativa HOM05D002370 ORTHO05D003878 9.0e-129 464.5 562 52.3
A06p03390 Brassica napus HOM05D002370 ORTHO05D003878 1.5e-128 463.8 564 50.9
EL10Ac9g22169 Beta vulgaris HOM05D002370 ORTHO05D003878 2.0e-128 463.4 543 51.6
BolC6t35612H Brassica oleracea HOM05D002370 ORTHO05D003878 2.0e-128 463.4 564 50.5
ATR0753G079 Amborella trichopoda HOM05D002370 ORTHO05D003878 2.6e-128 463.0 560 50.2
C05p34110 Brassica napus HOM05D002370 ORTHO05D003878 4.5e-128 462.2 559 49.9
C06p04900 Brassica napus HOM05D002370 ORTHO05D003878 2.2e-127 459.9 564 50.5
BcaC05g27452 Brassica carinata HOM05D002370 ORTHO05D003878 4.9e-127 458.8 562 50.2
BolC5t32146H Brassica oleracea HOM05D002370 ORTHO05D003878 4.9e-127 458.8 562 50.2
unitig_60.g25464 Utricularia gibba HOM05D002370 ORTHO05D003878 3.5e-125 452.6 555 51.2
Sc18g0007320 Simmondsia chinensis HOM05D002370 ORTHO05D003878 3.9e-124 449.1 512 53.7
BcaB02g11126 Brassica carinata HOM05D002370 ORTHO05D003878 2.1e-122 443.4 555 49.2
vmacro01937 Vaccinium macrocarpon HOM05D002370 ORTHO05D003878 2.4e-121 439.9 552 50.9
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 3.9e-116 422.5 527 49.0
SGA_v2.0_scaffold32G12979 Striga asiatica HOM05D002370 ORTHO05D003878 6.7e-116 421.8 659 43.6
SEGI_12344 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 4.3e-115 419.1 527 48.6
Zm00001eb285840 Zea mays HOM05D002370 ORTHO05D003878 3.3e-107 392.9 527 48.6
Os05g0235300 Oryza sativa ssp. japonica HOM05D002370 ORTHO05D003878 6.7e-100 368.6 485 48.7
GSVIVG01037040001 Vitis vinifera HOM05D002370 ORTHO05D003878 4.3e-99 365.9 863 34.4
CAN.G289.59 Capsicum annuum HOM05D002370 ORTHO05D003878 2.2e-98 363.6 221 88.7
CAN.G411.107 Capsicum annuum HOM05D002370 ORTHO05D003878 5.9e-96 355.5 223 85.7
SHI03324 Sapria himalayana HOM05D002370 ORTHO05D003878 1.1e-94 351.3 503 46.1
AagrBONN_evm.TU.Sc2ySwM_228.5412 Anthoceros agrestis HOM05D002370 ORTHO05D003878 1.4e-92 344.4 558 40.9
CAN.G606.78 Capsicum annuum HOM05D002370 ORTHO05D003878 3.7e-90 336.3 240 77.9
Oeu025303.1 Olea europaea HOM05D002370 ORTHO05D003878 1.7e-87 327.4 414 51.4
Cc02_g20170 Coffea canephora HOM05D002370 ORTHO05D003878 5.0e-87 325.9 225 75.1
Pp3c6_4910 Physcomitrium patens HOM05D002370 ORTHO05D003878 1.6e-85 320.9 530 40.6
Mapoly0047s0119 Marchantia polymorpha HOM05D002370 ORTHO05D003878 4.7e-85 319.3 514 42.0
SMO147G0225 Selaginella moellendorffii HOM05D002370 ORTHO05D003878 6.1e-85 318.9 543 40.5
Cpa.g.sc106.24 Carica papaya HOM05D002370 ORTHO05D003878 1.5e-83 314.3 226 72.1
CAN.G411.96 Capsicum annuum HOM05D002370 ORTHO05D003878 1.1e-81 308.1 241 71.4
QL11p028985 Quercus lobata HOM05D002370 ORTHO05D003878 7.0e-81 305.4 205 75.1
Haze_10321 Corylus avellana HOM05D002370 ORTHO05D003878 5.0e-79 299.3 232 68.1
CAN.G606.79 Capsicum annuum HOM05D002370 ORTHO05D020284 5.7e-75 285.8 240 68.8
CAN.G411.104 Capsicum annuum HOM05D002370 ORTHO05D003878 3.6e-69 266.5 214 71.0
Ah.01g024560 Amaranthus hybridus HOM05D002370 ORTHO05D003878 1.3e-66 258.1 186 71.5
Haze_10320 Corylus avellana HOM05D002370 ORTHO05D003878 2.7e-64 250.4 241 58.5
Hma1.2p1_1758F.1_g301190 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 1.0e-63 248.4 240 60.0
Gohir.A01G009566 Gossypium hirsutum HOM05D002370 ORTHO05D003878 5.0e-63 246.1 160 79.4
Lalb_Chr16g0376321 Lupinus albus HOM05D002370 ORTHO05D003878 9.5e-62 241.9 240 55.4
CAN.G411.101 Capsicum annuum HOM05D002370 ORTHO05D005166 1.2e-61 241.5 225 63.1
Cc02_g20160 Coffea canephora HOM05D002370 ORTHO05D003878 5.0e-55 219.5 241 56.8
PRCOL_00002418 Prasinoderma coloniale HOM05D002370 ORTHO05D003878 2.5e-54 217.2 588 29.4
CAN.G10698.1 Capsicum annuum HOM05D002370 ORTHO05D003878 8.6e-47 192.2 112 92.0
MCO06G142 Micromonas commoda HOM05D002370 ORTHO05D003878 5.2e-44 183.0 514 30.4
Cre09.g400553 Chlamydomonas reinhardtii HOM05D002370 ORTHO05D003878 1.3e-42 178.3 535 30.3
CAN.G289.58 Capsicum annuum HOM05D002370 ORTHO05D003878 3.2e-41 173.7 191 56.5
CBR_g23926 Chara braunii HOM05D002370 ORTHO05D003878 3.3e-38 163.7 526 29.1
CAN.G9920.1 Capsicum annuum HOM05D002370 ORTHO05D005166 3.9e-31 140.2 120 65.8
CAN.G12816.1 Capsicum annuum HOM05D002370 ORTHO05D003878 4.3e-30 136.7 162 53.1
Thecc.06G048300 Theobroma cacao HOM05D002370 ORTHO05D037785 1.9e-25 121.3 106 61.3
Cfa026368 Carpinus fangiana HOM05D002370 ORTHO05D003878 3.2e-25 120.6 493 26.6
FAN20G0378 Fragaria x ananassa HOM05D002370 ORTHO05D020284 4.6e-24 116.7 192 42.2
Thecc.01G281900 Theobroma cacao HOM05D002370 ORTHO05D037785 5.1e-23 113.2 91 64.8
Atru.chr5.2257 Acer truncatum HOM05D002370 ORTHO05D003878 4.2e-17 93.6 59 81.4
Haze_26242 Corylus avellana HOM05D002370 ORTHO05D003878 7.1e-17 92.8 186 32.3
CDE04G3197 Ceratophyllum demersum HOM05D002370 ORTHO05D020284 3.5e-16 90.5 61 78.7
FAN15G0843 Fragaria x ananassa HOM05D002370 ORTHO05D003878 4.3e-14 83.6 69 59.4
PSO017G1105 Papaver somniferum HOM05D000352 ORTHO05D000260 2.8e-13 80.9 109 45.9
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 3.6e-13 80.5 136 41.9
Lalb_Chr16g0376331 Lupinus albus HOM05D002370 ORTHO05D020284 3.6e-13 80.5 47 87.2
Thecc.08G169400 Theobroma cacao HOM05D002370 ORTHO05D037785 9.9e-11 72.4 144 38.2
TAR381G0014 Trochodendron aralioides HOM05D002370 ORTHO05D414920 2.2e-10 71.2 215 32.6
CAN.G411.94 Capsicum annuum HOM05D009846 ORTHO05D000368 5.4e-09 66.6 33 93.9
CAN.G1164.5 Capsicum annuum HOM05D009846 ORTHO05D002175 1.6e-08 65.1 42 73.8
FvH4_2g06710 Fragaria vesca HOM05D002370 ORTHO05D020284 2.5e-06 57.8 51 56.9
FAN24G2034 Fragaria x ananassa HOM05D002370 ORTHO05D020284 4.3e-06 57.0 46 63.0


User provided reference genes

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