Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G162.72 Capsicum annuum HOM05D005439 ORTHO05D006793 5.8e-74 280.8 142 100.0
PGSC0003DMG400001562 Solanum tuberosum HOM05D005439 ORTHO05D006793 2.6e-58 228.8 142 83.8
Sopen07g031460 Solanum pennellii HOM05D005439 ORTHO05D006793 5.9e-58 227.6 142 84.5
PGSC0003DMG400012454 Solanum tuberosum HOM05D005439 ORTHO05D006793 1.1e-56 223.4 142 81.7
Nitab4.5_0003769g0120 Nicotiana tabacum HOM05D005439 ORTHO05D006793 2.7e-55 218.8 143 80.4
Solyc07g063290.3 Solanum lycopersicum HOM05D005439 ORTHO05D006793 6.7e-54 214.2 142 81.7
Peaxi162Scf00998g00023 Petunia axillaris HOM05D005439 ORTHO05D006793 8.2e-52 207.2 139 79.9
Gohir.D11G296600 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.0e-41 173.7 130 65.4
CSS0022813 Camellia sinensis var. sinensis HOM05D005439 ORTHO05D006793 1.7e-41 172.9 129 65.9
Gohir.D11G168400 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.9e-41 172.2 130 64.6
Nitab4.5_0010521g0020 Nicotiana tabacum HOM05D005439 ORTHO05D006793 2.9e-41 172.2 143 69.9
Thecc.07G077600 Theobroma cacao HOM05D005439 ORTHO05D006793 2.9e-41 172.2 129 66.7
Gohir.A08G188900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.8e-41 171.8 130 64.6
Gohir.D08G040300 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.8e-41 171.8 130 64.6
Gohir.D10G173200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.8e-41 171.8 130 64.6
Gorai.007G319700 Gossypium raimondii HOM05D005439 ORTHO05D006793 3.8e-41 171.8 130 64.6
Gohir.D13G039100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 8.5e-41 170.6 130 64.6
Manes.15G085800 Manihot esculenta HOM05D005439 ORTHO05D006793 8.5e-41 170.6 130 66.9
Gohir.A05G386100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.1e-40 170.2 130 63.8
Rhsim04G0164900 Rhododendron simsii HOM05D005439 ORTHO05D006793 1.4e-40 169.9 120 66.7
Dinv04318 Davidia involucrata HOM05D005439 ORTHO05D006793 1.9e-40 169.5 128 68.0
Actinidia01110 Actinidia chinensis HOM05D005439 ORTHO05D006793 2.5e-40 169.1 116 71.6
Gohir.A08G058200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.2e-40 168.7 130 63.8
Gohir.A11G282786 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.5e-40 167.9 130 63.8
GSVIVG01014379001 Vitis vinifera HOM05D005439 ORTHO05D006793 5.5e-40 167.9 133 61.7
Oeu037221.1 Olea europaea HOM05D005439 ORTHO05D006793 9.4e-40 167.2 131 64.9
Gohir.A11G204100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 4.7e-39 164.9 137 61.3
Gorai.013G039600 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.4e-38 163.3 130 63.1
vmacro08610 Vaccinium macrocarpon HOM05D005439 ORTHO05D006793 1.4e-38 163.3 123 67.5
TWI15G0142 Tripterygium wilfordii HOM05D005439 ORTHO05D006793 1.8e-38 162.9 126 65.1
Cc04_g05330 Coffea canephora HOM05D005439 ORTHO05D006793 2.3e-38 162.5 131 64.1
RcHm_v2.0_Chr5g0034441 Rosa chinensis HOM05D005439 ORTHO05D006793 2.3e-38 162.5 123 65.9
Lsat_1_v5_gn_9_97261 Lactuca sativa HOM05D005439 ORTHO05D006793 3.9e-38 161.8 114 67.5
CiPaw.12G120500 Carya illinoinensis HOM05D005439 ORTHO05D006793 6.7e-38 161.0 123 65.0
HanXRQChr04g0095481 Helianthus annuus HOM05D005439 ORTHO05D006793 6.7e-38 161.0 125 63.2
Lsat_1_v5_gn_9_97181 Lactuca sativa HOM05D005439 ORTHO05D006793 6.7e-38 161.0 110 69.1
DCAR_000742 Daucus carota HOM05D005439 ORTHO05D006793 8.8e-38 160.6 114 71.9
Gorai.013G217100 Gossypium raimondii HOM05D005439 ORTHO05D006793 8.8e-38 160.6 130 62.3
PSO675G4650 Papaver somniferum HOM05D005439 ORTHO05D006793 8.8e-38 160.6 120 65.0
COL.COLO4_09427 Corchorus olitorius HOM05D005439 ORTHO05D006793 1.1e-37 160.2 121 65.3
Gorai.010G125600 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.1e-37 160.2 130 62.3
MD03G1224300 Malus domestica HOM05D005439 ORTHO05D006793 1.5e-37 159.8 115 70.4
Dinv30229 Davidia involucrata HOM05D005439 ORTHO05D006793 2.0e-37 159.5 124 67.7
ECA240G1812 Erigeron canadensis HOM05D005439 ORTHO05D006793 2.6e-37 159.1 116 68.1
CiPaw.08G146000 Carya illinoinensis HOM05D005439 ORTHO05D006793 4.4e-37 158.3 123 64.2
TAR624G0176 Trochodendron aralioides HOM05D005439 ORTHO05D006793 4.4e-37 158.3 111 70.3
Gorai.012G015600 Gossypium raimondii HOM05D005439 ORTHO05D006793 5.7e-37 157.9 130 60.8
Duzib170G0676 Durio zibethinus HOM05D005439 ORTHO05D006793 7.4e-37 157.5 125 64.0
Prupe.4G185100 Prunus persica HOM05D005439 ORTHO05D006793 9.7e-37 157.1 125 64.0
Cpa.g.sc53.123 Carica papaya HOM05D005439 ORTHO05D006793 2.2e-36 156.0 121 65.3
Potri.011G121800 Populus trichocarpa HOM05D005439 ORTHO05D006793 3.7e-36 155.2 135 59.3
Sabra11G0107800 Salix brachista HOM05D005439 ORTHO05D006793 4.8e-36 154.8 140 59.3
Aqoxy1G02538 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 8.2e-36 154.1 130 60.0
TAR626G0706 Trochodendron aralioides HOM05D005439 ORTHO05D006793 1.4e-35 153.3 123 65.0
Gohir.A03G006900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.3e-35 151.4 106 68.9
CANSAT80G2923 Cannabis sativa HOM05D005439 ORTHO05D006793 7.0e-35 151.0 131 61.8
Aqoxy6G01973 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 9.1e-35 150.6 130 61.5
Lalb_Chr20g0109751 Lupinus albus HOM05D005439 ORTHO05D006793 9.1e-35 150.6 128 60.9
Nn1g04026 Nelumbo nucifera HOM05D005439 ORTHO05D006793 1.0e-33 147.1 143 57.3
RcHm_v2.0_Chr6g0279991 Rosa chinensis HOM05D005439 ORTHO05D006793 1.7e-33 146.4 137 56.2
Haze_09469 Corylus avellana HOM05D005439 ORTHO05D006793 2.2e-33 146.0 149 55.7
Psat5g245080 Pisum sativum HOM05D005439 ORTHO05D006793 6.5e-33 144.4 125 60.0
AUR62034281 Chenopodium quinoa HOM05D005439 ORTHO05D006793 8.5e-33 144.1 124 54.8
Glyma.13G278900 Glycine max HOM05D005439 ORTHO05D006793 8.5e-33 144.1 124 59.7
Eucgr.I00444 Eucalyptus grandis HOM05D005439 ORTHO05D006793 4.2e-32 141.7 133 57.1
Medtr2g079590 Medicago truncatula HOM05D005439 ORTHO05D006793 5.5e-32 141.4 125 60.0
Atru.chr2.2728 Acer truncatum HOM05D005439 ORTHO05D006793 7.2e-32 141.0 125 56.8
Atru.chr2.2729 Acer truncatum HOM05D005439 ORTHO05D006793 7.2e-32 141.0 125 56.8
TPR.G16054 Trifolium pratense HOM05D005439 ORTHO05D006793 1.8e-30 136.3 139 55.4
Lj3g0027158 Lotus japonicus HOM05D005439 ORTHO05D006793 5.2e-30 134.8 135 54.8
Lj1g0010486 Lotus japonicus HOM05D005439 ORTHO05D006793 6.7e-30 134.4 138 54.3
arahy.Tifrunner.gnm1.ann1.5K0R4Y Arachis hypogaea HOM05D005439 ORTHO05D006793 8.8e-30 134.0 152 47.4
EL10Ac4g09544 Beta vulgaris HOM05D005439 ORTHO05D006793 3.3e-29 132.1 138 52.9
FAN14G2189 Fragaria x ananassa HOM05D005439 ORTHO05D006793 4.4e-29 131.7 139 52.5
Migut.H01926 Erythranthe guttata HOM05D005439 ORTHO05D006793 5.7e-29 131.3 123 58.5
AUR62042910 Chenopodium quinoa HOM05D005439 ORTHO05D006793 2.2e-28 129.4 141 50.4
ClCG11G007090 Citrullus lanatus HOM05D005439 ORTHO05D006793 8.2e-28 127.5 116 61.2
ATR0019G055 Amborella trichopoda HOM05D005439 ORTHO05D006793 2.4e-27 125.9 124 57.3
Sc18g0002800 Simmondsia chinensis HOM05D005439 ORTHO05D006793 4.1e-27 125.2 139 54.0
Hund22944 Selenicereus undatus HOM05D005439 ORTHO05D006793 4.5e-26 121.7 126 52.4
Gohir.D09G236700 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.0e-25 120.6 92 63.0
MELO3C008192.2 Cucumis melo HOM05D005439 ORTHO05D006793 5.0e-25 118.2 116 58.6
PSO541G3703 Papaver somniferum HOM05D005439 ORTHO05D006793 5.0e-25 118.2 90 63.3
unitig_32.g11156 Utricularia gibba HOM05D005439 ORTHO05D006793 5.0e-25 118.2 121 47.9
CARHR090470 Cardamine hirsuta HOM05D005439 ORTHO05D006793 1.9e-24 116.3 123 55.3
Ciclev10009838m.g Citrus clementina HOM05D005439 ORTHO05D006793 2.5e-24 115.9 87 65.5
Sed0007807 Sechium edule HOM05D005439 ORTHO05D006793 9.4e-24 114.0 119 53.8
SalBow7G3564 Salvia bowleyana HOM05D005439 ORTHO05D006793 1.6e-23 113.2 134 48.5
arahy.Tifrunner.gnm1.ann1.KJ06EE Arachis hypogaea HOM05D005439 ORTHO05D006793 2.7e-23 112.5 210 35.7
A02p03560 Brassica napus HOM05D005439 ORTHO05D006793 3.6e-23 112.1 112 52.7
Gorai.007G117500 Gossypium raimondii HOM05D005439 ORTHO05D006793 3.6e-23 112.1 92 60.9
THA.LOC104815550 Tarenaya hassleriana HOM05D005439 ORTHO05D006793 4.7e-23 111.7 132 50.8
PGR031G3442 Punica granatum HOM05D005439 ORTHO05D006793 6.1e-23 111.3 124 52.4
Carub.0003s1515 Capsella rubella HOM05D005439 ORTHO05D006793 8.0e-23 110.9 110 58.2
BraA02t05327Z Brassica rapa HOM05D005439 ORTHO05D006793 1.8e-22 109.8 123 51.2
MBI18_g17006_MAGBIO Magnolia biondii HOM05D005439 ORTHO05D006793 2.3e-22 109.4 126 46.8
BolC2t06755H Brassica oleracea HOM05D005439 ORTHO05D006793 3.0e-22 109.0 123 50.4
C09p60700 Brassica napus HOM05D005439 ORTHO05D006793 8.8e-22 107.5 123 49.6
Sp6g27700 Schrenkiella parvula HOM05D005439 ORTHO05D006793 1.2e-21 107.1 130 46.9
AT3G15420 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 2.0e-21 106.3 123 49.6
AL3G27970 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 2.6e-21 105.9 109 54.1
C02p08370 Brassica napus HOM05D005439 ORTHO05D006793 2.6e-21 105.9 123 49.6
QL08p019954 Quercus lobata HOM05D005439 ORTHO05D006793 2.6e-21 105.9 65 80.0
Potri.001G402700 Populus trichocarpa HOM05D005439 ORTHO05D006793 4.4e-21 105.1 91 57.1
BcaB08g36849 Brassica carinata HOM05D005439 ORTHO05D006793 5.7e-21 104.8 128 47.7
Eucgr.L03232 Eucalyptus grandis HOM05D005439 ORTHO05D006793 5.7e-21 104.8 92 56.5
Os04g0530000 Oryza sativa ssp. japonica HOM05D005439 ORTHO05D006793 7.5e-21 104.4 131 48.1
HPP92_001754 Vanilla planifolia HOM05D005439 ORTHO05D006793 1.3e-20 103.6 125 44.0
Aa31LG8G2660 Aethionema arabicum HOM05D005439 ORTHO05D006793 6.3e-20 101.3 130 46.9
Phvul.005G083100 Phaseolus vulgaris HOM05D005439 ORTHO05D006793 6.3e-20 101.3 118 49.2
AT1G80745 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 1.4e-19 100.1 123 44.7
Zm00001eb001470 Zea mays HOM05D005439 ORTHO05D006793 1.8e-19 99.8 134 44.0
Thhalv10021755m.g Eutrema salsugineum HOM05D005439 ORTHO05D006793 5.4e-19 98.2 141 43.3
MD11G1243100 Malus domestica HOM05D005439 ORTHO05D006793 1.6e-18 96.7 108 49.1
AL2G40660 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 7.7e-18 94.4 121 44.6
RcHm_v2.0_Chr2g0143371 Rosa chinensis HOM05D005439 ORTHO05D006793 7.7e-18 94.4 81 60.5
Carub.0002s2680 Capsella rubella HOM05D005439 ORTHO05D006793 2.3e-17 92.8 61 67.2
Gorai.004G187000 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.9e-17 92.4 67 65.7
TPR.G39010 Trifolium pratense HOM05D005439 ORTHO05D006793 3.8e-17 92.0 78 61.5
Zm00001eb403870 Zea mays HOM05D005439 ORTHO05D006793 3.8e-17 92.0 130 42.3
Mapoly0076s0011 Marchantia polymorpha HOM05D005439 ORTHO05D006793 2.5e-16 89.4 138 42.8
Sed0010430 Sechium edule HOM05D005439 ORTHO05D006793 2.3e-14 82.8 94 47.9
CDE08G1297 Ceratophyllum demersum HOM05D005439 ORTHO05D006793 4.0e-14 82.0 74 55.4
AagrBONN_evm.TU.Sc2ySwM_369.384 Anthoceros agrestis HOM05D005439 ORTHO05D006793 1.5e-13 80.1 111 42.3
VMungo1215G1396 Vigna mungo HOM05D005439 ORTHO05D006793 3.4e-13 79.0 92 47.8
BcaC03g18493 Brassica carinata HOM05D005439 ORTHO05D006793 4.9e-12 75.1 82 50.0
QL08p019959 Quercus lobata HOM05D005439 ORTHO05D006793 7.0e-11 71.2 46 73.9
Pp3c23_5480 Physcomitrium patens HOM05D005439 ORTHO05D006793 9.2e-11 70.9 111 40.5
SGA_v2.0_scaffold4G02008 Striga asiatica HOM05D000346 ORTHO05D000326 9.2e-11 70.9 64 56.2
FAN09G1944 Fragaria x ananassa HOM05D005439 ORTHO05D006793 2.3e-09 66.2 45 71.1
FAN02G1859 Fragaria x ananassa HOM05D005439 ORTHO05D006793 2.9e-09 65.9 45 71.1
RcHm_v2.0_Chr5g0034431 Rosa chinensis HOM05D005439 ORTHO05D006793 1.5e-08 63.5 58 55.2
CsaV3_2G034140 Cucumis sativus L. HOM05D003646 ORTHO05D004503 1.6e-07 60.1 50 64.0
AUR62029363 Chenopodium quinoa HOM05D005439 ORTHO05D006793 2.8e-07 59.3 49 51.0
BcaC04g18875 Brassica carinata HOM05D005439 ORTHO05D006793 4.0e-06 55.5 75 44.0


User provided reference genes

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