Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G162.41 Capsicum annuum HOM05D007784 ORTHO05D008654 2.4e-120 435.6 237 100.0
PGSC0003DMG400012442 Solanum tuberosum HOM05D007784 ORTHO05D008654 2.6e-71 272.7 248 66.5
Solyc07g062960.1 Solanum lycopersicum HOM05D007784 ORTHO05D008654 7.7e-63 244.6 237 62.0
Sopen07g031150 Solanum pennellii HOM05D007784 ORTHO05D008654 2.3e-59 233.0 226 61.9
Peaxi162Scf00069g01710 Petunia axillaris HOM05D007784 ORTHO05D008654 1.4e-51 207.2 205 62.9
Hma1.2p1_0387F.1_g141980 Hydrangea macrophylla HOM05D007784 ORTHO05D008654 9.5e-29 131.3 226 46.0
CSS0002410 Camellia sinensis var. sinensis HOM05D007784 ORTHO05D008654 9.9e-26 121.3 228 44.7
MSTRG.15239 Avicennia marina HOM05D007784 ORTHO05D008654 1.6e-23 114.0 221 44.8
Cc05_g11830 Coffea canephora HOM05D007784 ORTHO05D008654 3.9e-22 109.4 250 47.2
QL08p022546 Quercus lobata HOM05D007784 ORTHO05D008654 1.1e-21 107.8 239 43.1
ClCG11G017920 Citrullus lanatus HOM05D007784 ORTHO05D008654 5.6e-21 105.5 246 40.7
Oeu051079.1 Olea europaea HOM05D007784 ORTHO05D008654 2.1e-20 103.6 226 43.8
Rhsim06G0201400 Rhododendron simsii HOM05D007784 ORTHO05D008654 8.9e-19 98.2 245 40.8
Cfa020564 Carpinus fangiana HOM05D007784 ORTHO05D008654 7.6e-18 95.1 237 38.8
CiPaw.11G171500 Carya illinoinensis HOM05D007784 ORTHO05D008654 2.2e-17 93.6 243 37.9
Duzib268G0159 Durio zibethinus HOM05D007784 ORTHO05D008654 2.2e-17 93.6 237 40.9
Psat4g131560 Pisum sativum HOM05D007784 ORTHO05D008654 2.2e-17 93.6 230 36.5
Thecc.07G095100 Theobroma cacao HOM05D007784 ORTHO05D008654 1.1e-16 91.3 236 38.6
Gohir.D01G048300 Gossypium hirsutum HOM05D007784 ORTHO05D008654 1.9e-16 90.5 236 40.3
Gorai.002G068100 Gossypium raimondii HOM05D007784 ORTHO05D008654 1.9e-16 90.5 236 40.3
Duzib213G0720 Durio zibethinus HOM05D007784 ORTHO05D008654 5.4e-16 89.0 242 38.0
Gohir.A01G061700 Gossypium hirsutum HOM05D007784 ORTHO05D008654 9.3e-16 88.2 235 39.1
Sabra16G0260800 Salix brachista HOM05D007784 ORTHO05D008654 1.2e-15 87.8 241 40.2
MELO3C025600.2 Cucumis melo HOM05D007784 ORTHO05D008654 3.5e-15 86.3 253 37.2
COL.COLO4_36703 Corchorus olitorius HOM05D007784 ORTHO05D008654 6.0e-15 85.5 235 39.1
Potri.001G398000 Populus trichocarpa HOM05D007784 ORTHO05D008654 7.8e-15 85.1 238 39.1
Actinidia09697 Actinidia chinensis HOM05D007784 ORTHO05D008654 2.3e-14 83.6 231 36.4
Migut.M00785 Erythranthe guttata HOM05D007784 ORTHO05D008654 2.3e-14 83.6 221 36.7
Prupe.4G177000 Prunus persica HOM05D007784 ORTHO05D008654 3.9e-14 82.8 247 38.5
Dinv14932 Davidia involucrata HOM05D007784 ORTHO05D008654 8.7e-14 81.6 89 58.4
DCAR_017127 Daucus carota HOM05D007784 ORTHO05D008654 1.1e-13 81.3 215 38.6
Potri.011G116600 Populus trichocarpa HOM05D007784 ORTHO05D008654 1.1e-13 81.3 239 39.3
VMungo1127G1039 Vigna mungo HOM05D007784 ORTHO05D008654 1.5e-13 80.9 250 38.0
FAN16G2579 Fragaria x ananassa HOM05D007784 ORTHO05D008654 2.5e-13 80.1 233 39.1
CiPaw.12G119800 Carya illinoinensis HOM05D007784 ORTHO05D008654 3.3e-13 79.7 236 39.8
PGR031G1623 Punica granatum HOM05D007784 ORTHO05D008654 4.3e-13 79.3 240 35.4
MD03G1230800 Malus domestica HOM05D007784 ORTHO05D008654 5.6e-13 79.0 243 36.6
BcaB06g29548 Brassica carinata HOM05D009851 ORTHO05D008654 9.6e-13 78.2 222 39.2
PGR083G0236 Punica granatum HOM05D007784 ORTHO05D008654 3.6e-12 76.3 229 33.2
Sabra11G0102100 Salix brachista HOM05D007784 ORTHO05D008654 1.1e-11 74.7 243 37.9
Cpa.g.c36086 Carica papaya HOM05D007784 ORTHO05D008654 1.4e-11 74.3 257 35.0
Ca_23050_v3 Cicer arietinum L. HOM05D007784 ORTHO05D008654 1.4e-11 74.3 218 40.4
Lalb_Chr03g0030731 Lupinus albus HOM05D007784 ORTHO05D008654 1.4e-11 74.3 243 32.9
RcHm_v2.0_Chr5g0032821 Rosa chinensis HOM05D007784 ORTHO05D008654 1.8e-11 73.9 241 35.7
Glyma.12G163035 Glycine max HOM05D007784 ORTHO05D008654 2.4e-11 73.6 238 37.0
Manes.15G088900 Manihot esculenta HOM05D007784 ORTHO05D008654 2.4e-11 73.6 211 33.6
Phvul.011G165000 Phaseolus vulgaris HOM05D007784 ORTHO05D008654 5.3e-11 72.4 251 38.2
FvH4_3g19630 Fragaria vesca HOM05D007784 ORTHO05D008654 1.2e-10 71.2 237 34.6
FAN11G2265 Fragaria x ananassa HOM05D007784 ORTHO05D008654 1.2e-10 71.2 237 34.6
Lj3g0015921 Lotus japonicus HOM05D007784 ORTHO05D008654 1.2e-10 71.2 245 35.5
Sc16g0007130 Simmondsia chinensis HOM05D007784 ORTHO05D008654 1.2e-10 71.2 221 36.2
FAN21G3158 Fragaria x ananassa HOM05D007784 ORTHO05D008654 2.6e-10 70.1 241 34.0
CARHR090230 Cardamine hirsuta HOM05D009851 ORTHO05D008654 3.4e-10 69.7 223 34.1
AL3G27640 Arabidopsis lyrata HOM05D009851 ORTHO05D008654 7.6e-10 68.6 219 35.6
TPR.G18874 Trifolium pratense HOM05D007784 ORTHO05D008654 7.6e-10 68.6 167 42.5
Ciclev10010505m.g Citrus clementina HOM05D007784 ORTHO05D008654 9.9e-10 68.2 240 34.2
Gohir.D13G151926 Gossypium hirsutum HOM05D007784 ORTHO05D008654 1.3e-09 67.8 246 36.6
TWI38G0880 Tripterygium wilfordii HOM05D007784 ORTHO05D008654 1.3e-09 67.8 230 33.0
BolC5t33884H Brassica oleracea HOM05D009851 ORTHO05D008654 2.2e-09 67.0 217 38.2
C05p51990 Brassica napus HOM05D009851 ORTHO05D008654 3.8e-09 66.2 220 38.2
THA.LOC104810461 Tarenaya hassleriana HOM05D009851 ORTHO05D008654 3.8e-09 66.2 250 30.8
Haze_09448 Corylus avellana HOM05D007784 ORTHO05D008654 4.9e-09 65.9 93 51.6
TAR627G0444 Trochodendron aralioides HOM05D007784 ORTHO05D008654 8.4e-09 65.1 258 33.7
TAR627G0175 Trochodendron aralioides HOM05D007784 ORTHO05D008654 1.1e-08 64.7 256 33.2
CsaV3_4G033550 Cucumis sativus L. HOM05D007784 ORTHO05D008654 1.4e-08 64.3 251 32.7
Aqoxy1G02344 Aquilegia oxysepala HOM05D007784 ORTHO05D008654 1.9e-08 63.9 215 30.2
A05p34230 Brassica napus HOM05D009851 ORTHO05D008654 1.9e-08 63.9 217 38.2
BraA05t22243Z Brassica rapa HOM05D009851 ORTHO05D008654 1.9e-08 63.9 217 38.2
FAN25G3654 Fragaria x ananassa HOM05D007784 ORTHO05D008654 1.9e-08 63.9 239 34.7
Aqoxy5G00008 Aquilegia oxysepala HOM05D007784 ORTHO05D008654 2.4e-08 63.5 215 30.2
Carub.0001s4232 Capsella rubella HOM05D009851 ORTHO05D008654 3.2e-08 63.2 265 30.2
CANSAT56G4083 Cannabis sativa HOM05D007784 ORTHO05D008654 4.2e-08 62.8 269 32.3
Glyma.06G238300 Glycine max HOM05D007784 ORTHO05D008654 5.4e-08 62.4 248 33.1
Nn1g06458 Nelumbo nucifera HOM05D007784 ORTHO05D008654 5.4e-08 62.4 184 34.2
SalBow8G3696 Salvia bowleyana HOM05D007784 ORTHO05D008654 1.6e-07 60.8 100 48.0
AT3G15250 Arabidopsis thaliana HOM05D009851 ORTHO05D008654 2.1e-07 60.5 218 31.2
CARHR043380 Cardamine hirsuta HOM05D009851 ORTHO05D008654 2.1e-07 60.5 281 28.8
Manes.03G106700 Manihot esculenta HOM05D007784 ORTHO05D008654 2.1e-07 60.5 240 32.1
Lalb_Chr01g0006591 Lupinus albus HOM05D007784 ORTHO05D008654 2.7e-07 60.1 211 32.7
Atru.chr2.2433 Acer truncatum HOM05D007784 ORTHO05D008654 4.6e-07 59.3 260 33.1
BcaC08g43508 Brassica carinata HOM05D009851 ORTHO05D008654 6.0e-07 58.9 259 30.5
C06p08940 Brassica napus HOM05D009851 ORTHO05D008654 6.0e-07 58.9 259 30.5
BolC6t35972H Brassica oleracea HOM05D009851 ORTHO05D008654 6.0e-07 58.9 259 30.5
DCAR_019564 Daucus carota HOM05D007784 ORTHO05D008654 6.0e-07 58.9 231 32.0
PSO541G4378 Papaver somniferum HOM05D007784 ORTHO05D008654 1.0e-06 58.2 251 29.9
A06p01160 Brassica napus HOM05D009851 ORTHO05D008654 1.3e-06 57.8 250 28.4
Carub.0003s1490 Capsella rubella HOM05D009851 ORTHO05D008654 1.7e-06 57.4 214 35.0
Sp3g13450 Schrenkiella parvula HOM05D009851 ORTHO05D008654 2.3e-06 57.0 212 32.5
AL1G61530 Arabidopsis lyrata HOM05D009851 ORTHO05D008654 3.0e-06 56.6 268 29.1
BcaB06g29549 Brassica carinata HOM05D009851 ORTHO05D008654 3.9e-06 56.2 252 32.9
SGA_v2.0_scaffold73G24239 Striga asiatica HOM05D007784 ORTHO05D008654 6.6e-06 55.5 230 36.1
BraA06t23343Z Brassica rapa HOM05D009851 ORTHO05D008654 8.7e-06 55.1 253 28.9


User provided reference genes

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