Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1611.7 Capsicum annuum HOM05D007115 ORTHO05D008923 3.2e-119 431.8 224 100.0
Sopen03g029960 Solanum pennellii HOM05D007115 ORTHO05D008923 3.1e-98 362.1 228 85.5
Nitab4.5_0000624g0110 Nicotiana tabacum HOM05D007115 ORTHO05D008923 3.6e-94 348.6 233 81.1
Solyc03g019660.4 Solanum lycopersicum HOM05D007115 ORTHO05D008923 8.0e-94 347.4 219 84.9
PGSC0003DMG400015264 Solanum tuberosum HOM05D007115 ORTHO05D008923 6.8e-93 344.4 228 82.5
Nitab4.5_0001311g0160 Nicotiana tabacum HOM05D007115 ORTHO05D008923 2.0e-89 332.8 231 78.4
Peaxi162Scf00089g00121 Petunia axillaris HOM05D007115 ORTHO05D008923 2.1e-86 322.8 235 76.6
Haze_07151 Corylus avellana HOM05D007115 ORTHO05D008923 1.7e-72 276.6 225 65.3
Rhsim08G0191000 Rhododendron simsii HOM05D007115 ORTHO05D008923 1.5e-71 273.5 227 64.3
Cfa018785 Carpinus fangiana HOM05D007115 ORTHO05D008923 2.5e-71 272.7 214 67.8
CiPaw.12G043900 Carya illinoinensis HOM05D007115 ORTHO05D008923 3.3e-71 272.3 186 75.3
vmacro19121 Vaccinium macrocarpon HOM05D007115 ORTHO05D008923 9.5e-71 270.8 228 63.2
Actinidia25565 Actinidia chinensis HOM05D007115 ORTHO05D008923 6.2e-70 268.1 224 65.2
Sabra15G0118300 Salix brachista HOM05D007115 ORTHO05D008923 6.2e-70 268.1 221 64.7
Hma1.2p1_0014F.1_g009320 Hydrangea macrophylla HOM05D007115 ORTHO05D008923 2.3e-69 266.2 197 71.6
Dinv23157 Davidia involucrata HOM05D007115 ORTHO05D008923 3.1e-69 265.8 209 67.0
MSTRG.11273 Avicennia marina HOM05D007115 ORTHO05D008923 5.2e-69 265.0 193 72.0
Potri.015G097700 Populus trichocarpa HOM05D007115 ORTHO05D008923 3.4e-68 262.3 221 63.8
Oeu004998.1 Olea europaea HOM05D007115 ORTHO05D008923 1.7e-67 260.0 186 71.5
GSVIVG01008566001 Vitis vinifera HOM05D007115 ORTHO05D008923 2.2e-67 259.6 184 71.7
Glyma.06G169300 Glycine max HOM05D007115 ORTHO05D008923 1.1e-66 257.3 223 61.0
Lj5A95G76 Lonicera japonica HOM05D007115 ORTHO05D008923 1.1e-66 257.3 187 70.6
Atru.chr6.1807 Acer truncatum HOM05D007115 ORTHO05D008923 2.4e-66 256.1 218 62.8
ATR0790G002 Amborella trichopoda HOM05D007115 ORTHO05D008923 2.4e-66 256.1 180 72.2
Prupe.5G150000 Prunus persica HOM05D007115 ORTHO05D008923 3.2e-66 255.8 197 66.5
RcHm_v2.0_Chr7g0190021 Rosa chinensis HOM05D007115 ORTHO05D008923 5.4e-66 255.0 181 70.2
Ca_16052_v3 Cicer arietinum L. HOM05D007115 ORTHO05D008923 9.2e-66 254.2 211 63.5
MELO3C002367.2 Cucumis melo HOM05D007115 ORTHO05D008923 9.2e-66 254.2 216 62.0
Sc04g0000560 Simmondsia chinensis HOM05D007115 ORTHO05D008923 1.2e-65 253.8 225 60.9
Hund02448 Selenicereus undatus HOM05D007115 ORTHO05D008923 2.1e-65 253.1 188 67.6
Aqoxy5G03328 Aquilegia oxysepala HOM05D007115 ORTHO05D008923 3.5e-65 252.3 210 63.3
CsaV3_1G009730 Cucumis sativus L. HOM05D007115 ORTHO05D008923 4.6e-65 251.9 214 61.2
Thecc.03G130400 Theobroma cacao HOM05D007115 ORTHO05D008923 4.6e-65 251.9 220 59.1
ClCG03G003830 Citrullus lanatus HOM05D007115 ORTHO05D008923 7.8e-65 251.1 207 63.8
Duzib205G1497 Durio zibethinus HOM05D007115 ORTHO05D008923 1.3e-64 250.4 187 68.4
Manes.14G050500 Manihot esculenta HOM05D007115 ORTHO05D008923 1.7e-64 250.0 187 68.4
Glyma.04G196500 Glycine max HOM05D007115 ORTHO05D008923 2.3e-64 249.6 183 68.3
VMungo1309G2111 Vigna mungo HOM05D007115 ORTHO05D008923 2.3e-64 249.6 217 61.8
Medtr3g099140 Medicago truncatula HOM05D007115 ORTHO05D008923 3.0e-64 249.2 224 59.4
Phvul.009G165800 Phaseolus vulgaris HOM05D007115 ORTHO05D008923 3.0e-64 249.2 193 65.8
CSS0028892 Camellia sinensis var. sinensis HOM05D007115 ORTHO05D008923 5.1e-64 248.4 181 73.5
Lj1g0010129 Lotus japonicus HOM05D007115 ORTHO05D008923 5.1e-64 248.4 209 61.7
TWI39G0929 Tripterygium wilfordii HOM05D007115 ORTHO05D008923 5.1e-64 248.4 224 62.1
CSS0028949 Camellia sinensis var. sinensis HOM05D007115 ORTHO05D008923 8.6e-64 247.7 181 73.5
Cpa.g.sc13.101 Carica papaya HOM05D007115 ORTHO05D008923 1.5e-63 246.9 187 66.8
FvH4_5g08420 Fragaria vesca HOM05D007115 ORTHO05D008923 3.3e-63 245.7 181 67.4
FAN04G1902 Fragaria x ananassa HOM05D007115 ORTHO05D008923 3.3e-63 245.7 181 67.4
FAN13G1038 Fragaria x ananassa HOM05D007115 ORTHO05D008923 3.3e-63 245.7 181 67.4
MD06G1140800 Malus domestica HOM05D007115 ORTHO05D008923 4.3e-63 245.4 230 59.1
Ciclev10032623m.g Citrus clementina HOM05D007115 ORTHO05D008923 5.6e-63 245.0 187 69.0
Migut.I00540 Erythranthe guttata HOM05D007115 ORTHO05D008923 1.2e-62 243.8 194 69.1
FAN08G1896 Fragaria x ananassa HOM05D007115 ORTHO05D008923 3.6e-62 242.3 225 57.8
HanXRQChr02g0034681 Helianthus annuus HOM05D007115 ORTHO05D008923 6.2e-62 241.5 223 60.1
unitig_8.g3030 Utricularia gibba HOM05D007115 ORTHO05D008923 6.2e-62 241.5 193 63.2
TPR.G14207 Trifolium pratense HOM05D007115 ORTHO05D008923 1.1e-61 240.7 181 68.0
PGR083G2674 Punica granatum HOM05D007115 ORTHO05D008923 1.8e-61 240.0 173 72.3
FAN18G3505 Fragaria x ananassa HOM05D007115 ORTHO05D008923 4.0e-61 238.8 181 66.3
AUR62034838 Chenopodium quinoa HOM05D007115 ORTHO05D008923 5.2e-61 238.4 172 70.9
QL10p002688 Quercus lobata HOM05D007115 ORTHO05D008923 5.2e-61 238.4 262 53.4
EL10Ac5g11401 Beta vulgaris HOM05D007115 ORTHO05D008923 8.9e-61 237.7 175 70.3
Lalb_Chr11g0069511 Lupinus albus HOM05D007115 ORTHO05D008923 1.2e-60 237.3 224 58.5
SalBow5G3672 Salvia bowleyana HOM05D007115 ORTHO05D008923 4.4e-60 235.3 258 55.8
Cc04_g09720 Coffea canephora HOM05D007115 ORTHO05D008923 9.9e-60 234.2 193 65.3
CANSAT80G2203 Cannabis sativa HOM05D007115 ORTHO05D008923 1.3e-59 233.8 184 66.8
DCAR_007496 Daucus carota HOM05D007115 ORTHO05D008923 1.3e-59 233.8 207 61.4
ECA247G2755 Erigeron canadensis HOM05D001512 ORTHO05D001574 2.2e-59 233.0 168 69.0
THA.LOC104811583 Tarenaya hassleriana HOM05D007115 ORTHO05D008923 2.9e-59 232.6 182 63.2
Lsat_1_v5_gn_1_33120 Lactuca sativa HOM05D007115 ORTHO05D008923 3.7e-59 232.3 187 66.3
CDE02G1164 Ceratophyllum demersum HOM05D007115 ORTHO05D008923 1.9e-58 229.9 209 59.8
Eucgr.B00101 Eucalyptus grandis HOM05D007115 ORTHO05D008923 9.2e-58 227.6 191 62.3
SGA_v2.0_scaffold258G45802 Striga asiatica HOM05D007115 ORTHO05D008923 6.0e-57 224.9 281 49.5
HPP92_023120 Vanilla planifolia HOM05D007115 ORTHO05D008923 6.0e-57 224.9 202 57.9
Gohir.A11G036350 Gossypium hirsutum HOM05D007115 ORTHO05D008923 1.0e-56 224.2 178 66.3
Gohir.D11G039800 Gossypium hirsutum HOM05D007115 ORTHO05D008923 1.0e-56 224.2 212 58.0
Gorai.007G042800 Gossypium raimondii HOM05D007115 ORTHO05D008923 1.3e-56 223.8 212 58.5
Carub.0007s1613 Capsella rubella HOM05D007115 ORTHO05D008923 3.0e-56 222.6 196 58.7
TAR622G0416 Trochodendron aralioides HOM05D007115 ORTHO05D008923 1.9e-55 219.9 180 66.1
AL7G28270 Arabidopsis lyrata HOM05D007115 ORTHO05D008923 7.3e-55 218.0 197 57.9
Sp7g22910 Schrenkiella parvula HOM05D007115 ORTHO05D008923 9.6e-55 217.6 227 52.9
Thhalv10026135m.g Eutrema salsugineum HOM05D007115 ORTHO05D008923 1.6e-54 216.9 188 60.1
BolC1t01950H Brassica oleracea HOM05D007115 ORTHO05D008923 2.8e-54 216.1 211 55.9
AT4G24930 Arabidopsis thaliana HOM05D007115 ORTHO05D008923 4.7e-54 215.3 198 56.6
Nn4g22293 Nelumbo nucifera HOM05D007115 ORTHO05D008923 6.2e-54 214.9 137 75.2
Aa31LG7G10860 Aethionema arabicum HOM05D007115 ORTHO05D008923 1.1e-53 214.2 226 54.0
BcaNung06011 Brassica carinata HOM05D007115 ORTHO05D008923 2.4e-53 213.0 194 58.8
A01p16220 Brassica napus HOM05D007115 ORTHO05D008923 2.4e-53 213.0 224 50.9
BraA01t01558Z Brassica rapa HOM05D007115 ORTHO05D008923 2.4e-53 213.0 224 50.9
PSO017G0512 Papaver somniferum HOM05D007115 ORTHO05D008923 2.4e-53 213.0 181 63.5
CARHR232330 Cardamine hirsuta HOM05D007115 ORTHO05D008923 2.6e-52 209.5 185 58.9
C01p20210 Brassica napus HOM05D007115 ORTHO05D008923 2.2e-51 206.5 162 64.2
Zm00001eb334110 Zea mays HOM05D007115 ORTHO05D008923 1.6e-41 173.7 150 60.0
COL.COLO4_28141 Corchorus olitorius HOM05D007115 ORTHO05D008923 3.3e-39 166.0 99 79.8
AUR62029602 Chenopodium quinoa HOM05D007115 ORTHO05D008923 2.1e-38 163.3 99 76.8
arahy.Tifrunner.gnm1.ann1.YTW6SU Arachis hypogaea HOM05D007115 ORTHO05D008923 1.5e-36 157.1 192 50.0
Os01g0102300 Oryza sativa ssp. japonica HOM05D007115 ORTHO05D008923 9.9e-36 154.5 183 49.2
Pp3c6_23090 Physcomitrium patens HOM05D007115 ORTHO05D008923 1.5e-31 140.6 225 39.1
SMO356G0600 Selaginella moellendorffii HOM05D007115 ORTHO05D008923 2.2e-27 126.7 151 45.7
Psat5g051920 Pisum sativum HOM05D007115 ORTHO05D008923 6.5e-27 125.2 119 58.8
MBI11_g41395_MAGBIO Magnolia biondii HOM05D007115 ORTHO05D008923 1.4e-26 124.0 100 67.0
arahy.Tifrunner.gnm1.ann1.BUY811 Arachis hypogaea HOM05D007115 ORTHO05D008923 1.8e-24 117.1 121 57.9
ATR0405G001 Amborella trichopoda HOM05D007115 ORTHO05D008923 1.6e-22 110.5 62 82.3
Actinidia18342 Actinidia chinensis HOM05D007115 ORTHO05D008923 3.7e-22 109.4 64 75.0
Sed0002696 Sechium edule HOM05D007115 ORTHO05D008923 4.2e-18 95.9 114 51.8
Ah.02g114850 Amaranthus hybridus HOM05D007115 ORTHO05D008923 6.7e-16 88.6 138 42.0
SEGI_00544 Sequoiadendron giganteum HOM05D007115 ORTHO05D008923 1.5e-15 87.4 112 42.0
FAN18G1815 Fragaria x ananassa HOM05D007115 ORTHO05D008923 4.5e-12 75.9 59 62.7
Sabra12G0072200 Salix brachista HOM05D007115 ORTHO05D008923 1.0e-11 74.7 61 65.6
Actinidia18341 Actinidia chinensis HOM05D000804 ORTHO05D000989 8.5e-11 71.6 108 45.4
FAN13G2062 Fragaria x ananassa HOM05D007115 ORTHO05D008923 1.1e-10 71.2 61 60.7
PRCOL_00005130 Prasinoderma coloniale HOM05D003314 ORTHO05D004164 1.1e-07 61.2 92 35.9
AL6G46780 Arabidopsis lyrata HOM05D007115 ORTHO05D008923 7.4e-07 58.5 98 41.8


User provided reference genes

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