Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 3.7e-155 551.6 295 100.0
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 7.0e-138 494.2 295 89.5
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 8.5e-136 487.3 295 88.5
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 2.5e-127 459.1 295 84.4
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 3.1e-122 442.2 274 85.8
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 5.7e-116 421.4 239 92.9
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 2.8e-115 419.1 274 80.3
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 4.6e-105 385.2 261 74.3
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 6.6e-104 381.3 296 67.6
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 1.2e-102 377.1 296 68.9
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 2.1e-102 376.3 252 72.2
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 2.1e-102 376.3 297 68.0
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 2.8e-102 375.9 296 65.5
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 8.0e-102 374.4 289 66.4
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 1.4e-101 373.6 297 65.7
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 2.9e-99 365.9 284 67.3
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 3.7e-99 365.5 256 72.3
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 3.7e-99 365.5 253 71.9
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 5.4e-98 361.7 298 64.4
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 1.2e-97 360.5 261 68.6
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 6.0e-97 358.2 296 63.2
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 3.0e-96 355.9 297 63.0
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 6.6e-96 354.8 280 66.8
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 1.5e-95 353.6 289 63.0
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 1.5e-95 353.6 281 65.5
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 5.6e-95 351.7 290 62.1
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 7.3e-95 351.3 290 62.4
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 7.3e-95 351.3 261 67.4
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 9.5e-95 350.9 278 65.1
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 2.1e-94 349.7 281 64.8
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 2.8e-94 349.4 261 66.7
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 1.4e-93 347.1 223 77.6
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 2.3e-93 346.3 265 66.8
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 2.3e-93 346.3 272 65.8
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 3.1e-93 345.9 264 66.3
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 3.1e-93 345.9 277 64.6
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 3.1e-93 345.9 293 64.8
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 4.0e-93 345.5 223 77.1
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 4.0e-93 345.5 265 66.0
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 5.2e-93 345.1 273 63.4
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 6.8e-93 344.7 296 61.5
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 8.9e-93 344.4 256 67.6
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 1.2e-92 344.0 265 66.4
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 1.2e-92 344.0 268 64.6
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 2.6e-92 342.8 265 65.7
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 2.6e-92 342.8 281 63.0
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 2.6e-92 342.8 243 69.5
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 7.5e-92 341.3 252 68.3
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 7.5e-92 341.3 266 64.3
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 9.9e-92 340.9 296 61.5
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 1.3e-91 340.5 244 70.5
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 1.7e-91 340.1 272 63.2
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 2.2e-91 339.7 252 66.7
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 1.9e-90 336.7 279 62.4
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 1.9e-90 336.7 223 73.5
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 3.2e-90 335.9 299 60.5
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 4.1e-90 335.5 246 72.8
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 9.2e-90 334.3 290 60.3
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 3.5e-89 332.4 222 72.5
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 3.5e-89 332.4 279 61.6
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 7.8e-89 331.3 227 73.1
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 1.0e-88 330.9 285 60.4
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 3.0e-88 329.3 278 61.5
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 8.6e-88 327.8 243 66.3
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 9.5e-87 324.3 213 74.2
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 2.1e-86 323.2 291 58.4
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 2.8e-86 322.8 291 59.1
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 8.1e-86 321.2 242 65.7
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.8e-85 320.1 242 65.7
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 1.5e-84 317.0 270 58.9
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 2.6e-84 316.2 292 58.2
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 3.4e-84 315.8 291 57.7
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 4.4e-84 315.5 298 55.7
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 4.4e-84 315.5 271 59.8
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 5.8e-84 315.1 298 55.7
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 7.6e-84 314.7 292 56.5
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 1.3e-83 313.9 222 69.4
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 1.7e-83 313.5 222 68.5
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 2.2e-83 313.2 291 57.4
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 2.2e-83 313.2 291 57.0
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 2.2e-83 313.2 290 57.2
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 8.4e-83 311.2 298 55.0
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 4.2e-82 308.9 275 57.8
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 9.2e-82 307.8 222 68.5
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 7.8e-81 304.7 202 72.8
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 9.6e-79 297.7 222 65.3
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 3.6e-78 295.8 287 57.1
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 4.7e-78 295.4 270 57.0
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 1.5e-76 290.4 201 68.7
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 2.0e-76 290.0 277 55.6
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 2.0e-76 290.0 252 61.1
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 1.7e-75 287.0 183 75.4
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 4.2e-74 282.3 274 57.3
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 4.2e-74 282.3 283 50.9
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 2.7e-73 279.6 300 54.0
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 3.3e-71 272.7 267 55.8
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 3.6e-70 269.2 335 50.1
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 4.0e-69 265.8 173 76.3
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 4.0e-69 265.8 206 64.6
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 6.9e-69 265.0 175 76.0
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 2.6e-68 263.1 222 56.3
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 5.8e-68 261.9 201 65.2
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 9.9e-68 261.2 222 56.3
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 1.1e-66 257.7 223 57.4
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 2.4e-66 256.5 222 57.2
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 4.6e-65 252.3 259 53.7
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 2.3e-64 250.0 222 55.0
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 5.3e-61 238.8 221 54.3
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 2.9e-59 233.0 233 54.1
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 4.6e-57 225.7 162 64.2
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 5.3e-53 212.2 262 45.0
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 1.5e-52 210.7 177 56.5
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.5e-50 203.4 138 68.8
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 9.7e-47 191.4 232 50.0
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 2.6e-44 183.3 112 78.6
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 8.5e-43 178.3 146 61.6
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 7.2e-42 175.3 167 55.7
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 1.5e-36 157.5 222 40.5
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 7.9e-33 145.2 130 59.2
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 5.9e-28 129.0 99 60.6
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 5.0e-27 125.9 135 51.1
Cpa.g.c45301 Carica papaya HOM05D005617 ORTHO05D006847 2.7e-25 120.2 82 75.6
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 5.2e-24 115.9 177 36.2
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 2.0e-23 114.0 77 66.2
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 2.0e-23 114.0 77 64.9
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 1.7e-22 110.9 77 64.9
BolC8t48841H Brassica oleracea HOM05D005617 ORTHO05D006847 1.6e-20 104.4 78 64.1
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 1.8e-16 90.9 165 32.7
PRCOL_00005829 Prasinoderma coloniale HOM05D005617 ORTHO05D006847 2.6e-15 87.0 196 29.1
BcaC07g38438 Brassica carinata HOM05D005617 ORTHO05D006847 1.7e-14 84.3 80 55.0
Atru.chr2.966 Acer truncatum HOM05D005617 ORTHO05D006847 7.7e-12 75.5 54 68.5
BcaB01g02218 Brassica carinata HOM05D005617 ORTHO05D006847 2.5e-10 70.5 52 69.2
Rhsim04G0044500 Rhododendron simsii HOM05D005617 ORTHO05D000521 2.5e-10 70.5 73 52.1
TPR.G21937 Trifolium pratense HOM05D005617 ORTHO05D006847 4.7e-09 66.2 60 55.0
Cre03.g171100 Chlamydomonas reinhardtii HOM05D005617 ORTHO05D006847 1.0e-08 65.1 173 30.1
FvH4_6g01860 Fragaria vesca HOM05D005617 ORTHO05D006847 6.3e-06 55.8 59 45.8
FAN14G3066 Fragaria x ananassa HOM05D005617 ORTHO05D006847 6.3e-06 55.8 59 45.8
FAN14G4186 Fragaria x ananassa HOM05D005617 ORTHO05D006847 6.3e-06 55.8 59 45.8
FAN14G5978 Fragaria x ananassa HOM05D005617 ORTHO05D006847 6.3e-06 55.8 59 45.8


User provided reference genes

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