Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1600.1 Capsicum annuum HOM05D003886 ORTHO05D004587 3.3e-30 134.4 69 100.0
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 7.1e-17 90.1 51 86.3
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 7.1e-17 90.1 51 86.3
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 7.1e-17 90.1 51 86.3
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 2.7e-16 88.2 51 84.3
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 1.3e-15 85.9 55 74.5
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 2.3e-15 85.1 51 80.4
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 2.3e-15 85.1 51 80.4
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 1.1e-14 82.8 51 78.4
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 1.1e-14 82.8 51 78.4
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 1.1e-14 82.8 51 78.4
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 3.3e-14 81.3 52 76.9
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 5.6e-14 80.5 52 75.0
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 7.3e-14 80.1 52 73.1
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 9.6e-14 79.7 51 74.5
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 9.6e-14 79.7 45 82.2
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.6e-13 79.0 52 73.1
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.6e-13 79.0 52 73.1
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 1.6e-13 79.0 51 74.5
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 2.8e-13 78.2 52 78.8
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 6.2e-13 77.0 47 78.7
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 6.2e-13 77.0 47 78.7
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.4e-12 75.9 51 68.6
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 1.4e-12 75.9 46 78.3
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 1.8e-12 75.5 52 71.2
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 1.8e-12 75.5 51 70.6
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 1.8e-12 75.5 52 69.2
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 2.4e-12 75.1 53 75.5
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 3.1e-12 74.7 52 75.0
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 3.1e-12 74.7 56 67.9
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 3.1e-12 74.7 53 73.6
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 3.1e-12 74.7 50 68.0
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 3.1e-12 74.7 52 75.0
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 4.0e-12 74.3 50 66.0
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 5.3e-12 73.9 53 73.6
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 5.3e-12 73.9 55 65.5
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 5.3e-12 73.9 55 65.5
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 5.3e-12 73.9 52 73.1
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 5.3e-12 73.9 53 67.9
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 6.9e-12 73.6 50 70.0
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 6.9e-12 73.6 57 70.2
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 6.9e-12 73.6 53 71.7
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 9.0e-12 73.2 53 73.6
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 9.0e-12 73.2 53 73.6
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 9.0e-12 73.2 45 73.3
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 9.0e-12 73.2 45 73.3
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 9.0e-12 73.2 53 71.7
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 9.0e-12 73.2 46 78.3
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 1.2e-11 72.8 46 78.3
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 1.2e-11 72.8 46 71.7
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 1.2e-11 72.8 46 71.7
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 1.2e-11 72.8 61 62.3
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.2e-11 72.8 53 73.6
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 1.2e-11 72.8 53 73.6
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 1.2e-11 72.8 44 79.5
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 1.2e-11 72.8 55 69.1
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 1.2e-11 72.8 61 63.9
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 1.2e-11 72.8 53 73.6
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 1.5e-11 72.4 53 71.7
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 1.5e-11 72.4 53 71.7
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.5e-11 72.4 51 66.7
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.5e-11 72.4 47 76.6
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.5e-11 72.4 47 76.6
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 1.5e-11 72.4 50 68.0
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 1.5e-11 72.4 54 64.8
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 1.5e-11 72.4 53 71.7
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 2.0e-11 72.0 61 63.9
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 2.0e-11 72.0 46 76.1
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 2.0e-11 72.0 60 63.3
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 2.0e-11 72.0 55 70.9
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 2.0e-11 72.0 46 73.9
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 2.0e-11 72.0 46 73.9
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 2.0e-11 72.0 46 73.9
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 2.6e-11 71.6 46 73.9
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 2.6e-11 71.6 54 75.9
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 2.6e-11 71.6 54 75.9
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 2.6e-11 71.6 47 72.3
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 2.6e-11 71.6 55 61.8
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 3.4e-11 71.2 52 67.3
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 3.4e-11 71.2 46 69.6
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 4.5e-11 70.9 53 69.8
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 4.5e-11 70.9 53 69.8
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 4.5e-11 70.9 53 69.8
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 4.5e-11 70.9 53 67.9
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 4.5e-11 70.9 54 72.2
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 5.8e-11 70.5 53 71.7
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 5.8e-11 70.5 61 59.0
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 5.8e-11 70.5 46 73.9
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 7.6e-11 70.1 51 64.7
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 7.6e-11 70.1 46 71.7
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 7.6e-11 70.1 46 73.9
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 7.6e-11 70.1 48 72.9
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 9.9e-11 69.7 46 76.1
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 9.9e-11 69.7 53 67.9
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 9.9e-11 69.7 45 71.1
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 9.9e-11 69.7 46 71.7
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 1.3e-10 69.3 53 71.7
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 1.3e-10 69.3 53 69.8
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 1.7e-10 68.9 45 68.9
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 1.7e-10 68.9 46 69.6
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 1.7e-10 68.9 46 69.6
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 1.7e-10 68.9 46 71.7
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 2.2e-10 68.6 46 76.1
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 2.2e-10 68.6 54 66.7
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 2.9e-10 68.2 46 73.9
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 2.9e-10 68.2 51 68.6
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 3.8e-10 67.8 63 63.5
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 3.8e-10 67.8 63 63.5
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 3.8e-10 67.8 63 63.5
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 3.8e-10 67.8 63 63.5
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 3.8e-10 67.8 63 63.5
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 4.9e-10 67.4 59 57.6
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 4.9e-10 67.4 58 62.1
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 6.4e-10 67.0 60 65.0
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 6.4e-10 67.0 46 67.4
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 6.4e-10 67.0 52 65.4
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 8.4e-10 66.6 51 60.8
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 8.4e-10 66.6 46 67.4
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 8.4e-10 66.6 61 59.0
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 1.1e-09 66.2 47 70.2
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 1.1e-09 66.2 47 70.2
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 1.1e-09 66.2 56 58.9
Gohir.A07G077000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.4e-09 65.9 52 69.2
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 1.9e-09 65.5 57 68.4
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 2.4e-09 65.1 53 64.2
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 3.2e-09 64.7 48 62.5
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 7.1e-09 63.5 57 63.2
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 7.1e-09 63.5 50 58.0
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 9.3e-09 63.2 53 64.2
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 2.1e-08 62.0 55 56.4
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 2.1e-08 62.0 41 70.7
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 4.6e-08 60.8 48 62.5
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 1.0e-07 59.7 54 57.4
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 3.0e-07 58.2 37 75.7
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 3.9e-07 57.8 30 86.7
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 5.1e-07 57.4 46 54.3
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 1.9e-06 55.5 30 80.0
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 5.6e-06 53.9 31 83.9
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 7.4e-06 53.5 28 85.7
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 7.4e-06 53.5 31 71.0


User provided reference genes

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