Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G160.69 Capsicum annuum HOM05D006988 ORTHO05D008731 9.1e-119 430.3 217 100.0
Sopen10g008330 Solanum pennellii HOM05D006988 ORTHO05D008731 2.2e-88 329.3 206 82.5
PGSC0003DMG400011763 Solanum tuberosum HOM05D006988 ORTHO05D008731 2.2e-88 329.3 207 82.1
Solyc10g018590.2 Solanum lycopersicum HOM05D006988 ORTHO05D008731 4.9e-88 328.2 207 82.6
Peaxi162Scf00350g00014 Petunia axillaris HOM05D006988 ORTHO05D008731 2.4e-87 325.9 220 75.9
Nitab4.5_0000882g0050 Nicotiana tabacum HOM05D006988 ORTHO05D008731 1.4e-82 310.1 227 74.4
Nitab4.5_0001501g0030 Nicotiana tabacum HOM05D006988 ORTHO05D008731 1.7e-80 303.1 206 78.6
MELO3C021141.2 Cucumis melo HOM05D006988 ORTHO05D008731 3.5e-78 295.4 193 77.7
Migut.B01575 Erythranthe guttata HOM05D006988 ORTHO05D008731 4.6e-78 295.0 190 77.4
CsaV3_6G009120 Cucumis sativus L. HOM05D006988 ORTHO05D008731 3.9e-77 292.0 202 75.2
Gohir.D07G153600 Gossypium hirsutum HOM05D006988 ORTHO05D008731 1.5e-76 290.0 191 75.9
Haze_02728 Corylus avellana HOM05D006988 ORTHO05D008731 2.5e-76 289.3 203 71.4
Gorai.001G175700 Gossypium raimondii HOM05D006988 ORTHO05D008731 4.3e-76 288.5 191 75.4
Manes.01G270400 Manihot esculenta HOM05D006988 ORTHO05D008731 5.6e-76 288.1 185 76.8
SalBow5G4855 Salvia bowleyana HOM05D006988 ORTHO05D008731 1.2e-75 287.0 216 69.9
Potri.014G058400 Populus trichocarpa HOM05D006988 ORTHO05D008731 2.8e-75 285.8 190 74.2
Prupe.2G135300 Prunus persica HOM05D006988 ORTHO05D008731 2.8e-75 285.8 188 75.5
QL04p035766 Quercus lobata HOM05D006988 ORTHO05D008731 2.8e-75 285.8 180 76.1
FvH4_7g10720 Fragaria vesca HOM05D006988 ORTHO05D008731 3.6e-75 285.4 217 67.7
Lsat_1_v5_gn_7_10320 Lactuca sativa HOM05D006988 ORTHO05D008731 3.6e-75 285.4 218 67.4
Cc02_g24580 Coffea canephora HOM05D006988 ORTHO05D008731 8.1e-75 284.3 202 71.3
CSS0001978 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 1.4e-74 283.5 223 66.8
CSS0011747 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 1.4e-74 283.5 223 66.8
Dinv43657 Davidia involucrata HOM05D006988 ORTHO05D008731 1.4e-74 283.5 207 70.0
Sed0016586 Sechium edule HOM05D006988 ORTHO05D008731 1.4e-74 283.5 207 70.5
Ca_27093_v3 Cicer arietinum L. HOM05D006988 ORTHO05D008731 1.8e-74 283.1 185 75.1
Sabra14G0042600 Salix brachista HOM05D006988 ORTHO05D008731 1.8e-74 283.1 190 74.2
Thecc.01G386200 Theobroma cacao HOM05D006988 ORTHO05D008731 2.3e-74 282.7 211 68.7
COL.COLO4_12466 Corchorus olitorius HOM05D006988 ORTHO05D008731 3.1e-74 282.3 207 72.0
Gohir.A07G147500 Gossypium hirsutum HOM05D006988 ORTHO05D008731 4.0e-74 282.0 179 77.1
Hma1.2p1_0341F.1_g130300 Hydrangea macrophylla HOM05D006988 ORTHO05D008731 4.0e-74 282.0 180 75.0
Duzib133G0505 Durio zibethinus HOM05D006988 ORTHO05D008731 5.2e-74 281.6 204 71.6
ClCG06G003000 Citrullus lanatus HOM05D006988 ORTHO05D008731 6.8e-74 281.2 188 75.5
FAN06G2548 Fragaria x ananassa HOM05D006988 ORTHO05D008731 6.8e-74 281.2 188 73.9
FAN06G3033 Fragaria x ananassa HOM05D006988 ORTHO05D008731 6.8e-74 281.2 188 73.9
VMungo1383G3408 Vigna mungo HOM05D006988 ORTHO05D008731 8.9e-74 280.8 185 74.1
EL10Ac1g00818 Beta vulgaris HOM05D006988 ORTHO05D008731 1.2e-73 280.4 207 70.0
FAN03G1007 Fragaria x ananassa HOM05D006988 ORTHO05D008731 2.0e-73 279.6 217 67.3
AUR62013709 Chenopodium quinoa HOM05D006988 ORTHO05D008731 4.4e-73 278.5 226 62.4
Lj9A563T51 Lonicera japonica HOM05D006988 ORTHO05D008731 4.4e-73 278.5 205 70.2
AUR62004148 Chenopodium quinoa HOM05D006988 ORTHO05D008731 9.8e-73 277.3 226 62.4
Phvul.008G157000 Phaseolus vulgaris HOM05D006988 ORTHO05D008731 1.3e-72 276.9 185 72.4
Hund17063 Selenicereus undatus HOM05D006988 ORTHO05D008731 2.2e-72 276.2 200 69.0
SGA_v2.0_scaffold153G36954 Striga asiatica HOM05D006988 ORTHO05D008731 2.9e-72 275.8 216 66.7
ECA236G3211 Erigeron canadensis HOM05D006988 ORTHO05D008731 6.4e-72 274.6 224 62.9
CiPaw.13G030900 Carya illinoinensis HOM05D006988 ORTHO05D008731 8.3e-72 274.2 206 67.0
Glyma.01G076100 Glycine max HOM05D006988 ORTHO05D008731 1.1e-71 273.9 184 71.7
Rhsim07G0032500 Rhododendron simsii HOM05D006988 ORTHO05D008731 1.4e-71 273.5 187 72.2
arahy.Tifrunner.gnm1.ann1.EWF75K Arachis hypogaea HOM05D006988 ORTHO05D008731 3.2e-71 272.3 209 66.0
arahy.Tifrunner.gnm1.ann1.I2GGUW Arachis hypogaea HOM05D006988 ORTHO05D008731 3.2e-71 272.3 209 66.0
MD07G1111900 Malus domestica HOM05D006988 ORTHO05D008731 3.2e-71 272.3 188 71.8
Lj1g0025695 Lotus japonicus HOM05D006988 ORTHO05D008731 4.1e-71 271.9 216 64.8
Atru.chr5.214 Acer truncatum HOM05D006988 ORTHO05D008731 1.2e-70 270.4 197 68.0
DCAR_031865 Daucus carota HOM05D006988 ORTHO05D008731 1.6e-70 270.0 183 72.1
CANSAT01G0747 Cannabis sativa HOM05D006988 ORTHO05D008731 2.1e-70 269.6 195 71.3
HanXRQChr06g0168881 Helianthus annuus HOM05D006988 ORTHO05D008731 3.5e-70 268.9 210 67.6
THA.LOC104814078 Tarenaya hassleriana HOM05D006988 ORTHO05D008731 3.5e-70 268.9 180 72.8
Nn6g33931 Nelumbo nucifera HOM05D006988 ORTHO05D008731 4.6e-70 268.5 181 72.4
Glyma.11G164037 Glycine max HOM05D006988 ORTHO05D008731 7.8e-70 267.7 185 70.3
Medtr7g444820 Medicago truncatula HOM05D006988 ORTHO05D008731 2.3e-69 266.2 190 70.0
TAR636G1375 Trochodendron aralioides HOM05D006988 ORTHO05D008731 2.3e-69 266.2 188 68.6
MBI04_g09512_MAGBIO Magnolia biondii HOM05D006988 ORTHO05D008731 5.1e-69 265.0 202 66.8
ATR0317G076 Amborella trichopoda HOM05D006988 ORTHO05D008731 2.8e-67 259.2 207 65.7
Aqoxy7G00790 Aquilegia oxysepala HOM05D006988 ORTHO05D008731 2.8e-67 259.2 201 65.2
Sp6g00080 Schrenkiella parvula HOM05D006988 ORTHO05D008731 3.6e-67 258.8 193 67.4
CARHR248070 Cardamine hirsuta HOM05D006988 ORTHO05D008731 1.8e-66 256.5 185 68.1
PSO170G6265 Papaver somniferum HOM05D006988 ORTHO05D008731 2.3e-66 256.1 176 69.3
Carub.0006s3719 Capsella rubella HOM05D006988 ORTHO05D008731 4.4e-65 251.9 185 66.5
AT4G00030 Arabidopsis thaliana HOM05D006988 ORTHO05D008731 5.8e-65 251.5 184 66.3
C09p00070 Brassica napus HOM05D006988 ORTHO05D008731 7.6e-65 251.1 179 67.6
BraA09t35681Z Brassica rapa HOM05D006988 ORTHO05D008731 7.6e-65 251.1 179 67.6
SEGI_39512 Sequoiadendron giganteum HOM05D006988 ORTHO05D008731 1.7e-64 250.0 176 67.0
BcaC04g24207 Brassica carinata HOM05D006988 ORTHO05D008731 2.9e-64 249.2 175 68.6
BolC9t52942H Brassica oleracea HOM05D006988 ORTHO05D008731 2.9e-64 249.2 175 68.6
BcaB01g02207 Brassica carinata HOM05D006988 ORTHO05D008731 4.9e-64 248.4 179 67.0
COL.COLO4_37993 Corchorus olitorius HOM05D006988 ORTHO05D008731 8.4e-64 247.7 203 65.5
AL6G53480 Arabidopsis lyrata HOM05D006988 ORTHO05D008731 1.1e-63 247.3 185 65.9
Aa31LG5G100 Aethionema arabicum HOM05D006988 ORTHO05D008731 3.2e-63 245.7 206 61.7
Os04g0551700 Oryza sativa ssp. japonica HOM05D006988 ORTHO05D008731 2.7e-62 242.7 184 63.6
TPR.G39083 Trifolium pratense HOM05D006988 ORTHO05D008731 1.7e-61 240.0 146 80.8
GSVIVG01018209001 Vitis vinifera HOM05D006988 ORTHO05D008731 3.0e-61 239.2 140 78.6
Zm00001eb257570 Zea mays HOM05D006988 ORTHO05D008731 5.1e-61 238.4 173 65.3
Ciclev10022767m.g Citrus clementina HOM05D006988 ORTHO05D008731 7.3e-60 234.6 140 79.3
RcHm_v2.0_Chr1g0348671 Rosa chinensis HOM05D006988 ORTHO05D008731 2.0e-57 226.5 167 69.5
TWI59G0585 Tripterygium wilfordii HOM05D006988 ORTHO05D008731 9.9e-57 224.2 205 60.5
Ah.16g110010 Amaranthus hybridus HOM05D006988 ORTHO05D008731 1.1e-55 220.7 152 70.4
Eucgr.D02502 Eucalyptus grandis HOM05D006988 ORTHO05D008731 1.1e-55 220.7 152 73.7
SMO367G0814 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 2.4e-55 219.5 173 59.0
SMO367G0459 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 1.2e-54 217.2 173 58.4
MSTRG.20719 Avicennia marina HOM05D006988 ORTHO05D008731 4.6e-54 215.3 183 66.1
FAN01G2452 Fragaria x ananassa HOM05D006988 ORTHO05D008731 4.6e-54 215.3 166 68.1
Pp3c14_7270 Physcomitrium patens HOM05D006988 ORTHO05D008731 2.3e-53 213.0 192 55.7
Cpa.g.sc620.2 Carica papaya HOM05D006988 ORTHO05D008731 4.3e-52 208.8 166 64.5
Mapoly0004s0296 Marchantia polymorpha HOM05D006988 ORTHO05D008731 4.8e-51 205.3 171 59.1
Sc23g0003890 Simmondsia chinensis HOM05D006988 ORTHO05D008731 1.2e-49 200.7 165 59.4
Psat3g157120 Pisum sativum HOM05D006988 ORTHO05D008731 1.8e-45 186.8 154 66.9
vmacro13459 Vaccinium macrocarpon HOM05D006988 ORTHO05D008731 4.0e-42 175.6 167 61.7
SMO367G0117 Selaginella moellendorffii HOM05D012767 ORTHO05D008731 6.7e-37 158.3 163 50.9
Thhalv10028565m.g Eutrema salsugineum HOM05D000447 ORTHO05D000315 8.7e-37 157.9 124 64.5
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 6.2e-35 151.8 200 45.0
C03p91270 Brassica napus HOM05D006988 ORTHO05D008731 1.1e-34 151.0 123 58.5
BcaC03g13893 Brassica carinata HOM05D006988 ORTHO05D008731 5.8e-33 145.2 194 43.8
C02p10970 Brassica napus HOM05D006988 ORTHO05D008731 1.2e-30 137.5 90 66.7
BolC2t07167H Brassica oleracea HOM05D006988 ORTHO05D008731 4.6e-30 135.6 83 69.9
AagrBONN_evm.TU.Sc2ySwM_362.1347 Anthoceros agrestis HOM05D006988 ORTHO05D008731 1.8e-29 133.7 144 48.6
PRCOL_00005443 Prasinoderma coloniale HOM05D006988 ORTHO05D008731 3.0e-29 132.9 230 37.4
MCO12G266 Micromonas commoda HOM05D006988 ORTHO05D008731 1.3e-24 117.5 176 39.8
BcaC01g03084 Brassica carinata HOM05D006988 ORTHO05D008731 8.5e-24 114.8 171 40.4
Lalb_Chr19g0127481 Lupinus albus HOM05D006988 ORTHO05D008731 3.9e-21 105.9 55 81.8
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 3.3e-20 102.8 87 67.8
unitig_26.g9723 Utricularia gibba HOM05D000502 ORTHO05D000356 1.2e-17 94.4 118 49.2
A09p00790 Brassica napus HOM05D006988 ORTHO05D008731 9.4e-15 84.7 98 52.0
Actinidia12175 Actinidia chinensis HOM05D006988 ORTHO05D008731 3.6e-14 82.8 82 51.2
Dinv13821 Davidia involucrata HOM05D006988 ORTHO05D008731 2.2e-11 73.6 64 67.2
C03p56160 Brassica napus HOM05D001199 ORTHO05D001013 2.4e-10 70.1 85 49.4
BolC3t17906H Brassica oleracea HOM05D001199 ORTHO05D001013 2.4e-10 70.1 84 50.0
Actinidia22773 Actinidia chinensis HOM05D006988 ORTHO05D008731 2.2e-08 63.5 34 79.4
RcHm_v2.0_Chr1g0348661 Rosa chinensis HOM05D006988 ORTHO05D008731 2.2e-08 63.5 33 81.8
CiPaw.14G129700 Carya illinoinensis HOM05D006358 ORTHO05D008185 8.5e-08 61.6 162 30.2
ECA248G2469 Erigeron canadensis HOM05D006358 ORTHO05D008185 8.5e-08 61.6 166 30.7
RcHm_v2.0_Chr5g0080731 Rosa chinensis HOM05D006358 ORTHO05D008185 1.9e-07 60.5 189 29.1
GSVIVG01026586001 Vitis vinifera HOM05D005663 ORTHO05D007258 3.2e-07 59.7 143 28.7
FAN16G0252 Fragaria x ananassa HOM05D006358 ORTHO05D008185 4.2e-07 59.3 168 28.6
HPP92_016149 Vanilla planifolia HOM05D005663 ORTHO05D007258 4.2e-07 59.3 174 26.4
Haze_25195 Corylus avellana HOM05D005663 ORTHO05D007258 5.5e-07 58.9 139 32.4
FAN21G1333 Fragaria x ananassa HOM05D000259 ORTHO05D008185 9.4e-07 58.2 185 28.6
FAN25G3418 Fragaria x ananassa HOM05D000259 ORTHO05D008185 9.4e-07 58.2 185 28.6
FvH4_3g44350 Fragaria vesca HOM05D006358 ORTHO05D008185 1.2e-06 57.8 194 25.3
GSVIVG01025367001 Vitis vinifera HOM05D006358 ORTHO05D008185 1.2e-06 57.8 161 29.2
Haze_23007 Corylus avellana HOM05D006358 ORTHO05D008185 1.6e-06 57.4 155 29.0
Solyc01g006330.4 Solanum lycopersicum HOM05D006358 ORTHO05D008185 1.6e-06 57.4 170 28.2
FAN11G2908 Fragaria x ananassa HOM05D000259 ORTHO05D008185 2.1e-06 57.0 192 25.5
Lalb_Chr19g0127491 Lupinus albus HOM05D006988 ORTHO05D008731 2.1e-06 57.0 72 48.6
Cfa009639 Carpinus fangiana HOM05D006358 ORTHO05D008185 3.6e-06 56.2 161 29.2
MD11G1015800 Malus domestica HOM05D006358 ORTHO05D008185 3.6e-06 56.2 164 28.7
PGSC0003DMG400032149 Solanum tuberosum HOM05D006358 ORTHO05D008185 3.6e-06 56.2 170 27.6
DCAR_024375 Daucus carota HOM05D006358 ORTHO05D008185 4.7e-06 55.8 166 28.9
Haze_25187 Corylus avellana HOM05D005663 ORTHO05D007258 6.1e-06 55.5 172 29.1
FAN17G2784 Fragaria x ananassa HOM05D006358 ORTHO05D008185 6.1e-06 55.5 190 27.4
unitig_899.g14706 Utricularia gibba HOM05D005663 ORTHO05D007258 6.1e-06 55.5 194 24.7
CAN.G140.8 Capsicum annuum HOM05D006358 ORTHO05D008185 7.9e-06 55.1 188 27.7
Hund03480 Selenicereus undatus HOM05D005663 ORTHO05D007258 7.9e-06 55.1 161 29.2


User provided reference genes

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