Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G160.58 Capsicum annuum HOM05D005809 ORTHO05D007259 3.9e-120 434.9 228 100.0
Sopen07g001740 Solanum pennellii HOM05D005809 ORTHO05D007259 4.0e-101 371.7 229 86.0
PGSC0003DMG401011139 Solanum tuberosum HOM05D005809 ORTHO05D007259 2.6e-100 369.0 234 85.0
Solyc07g005640.3 Solanum lycopersicum HOM05D005809 ORTHO05D007259 5.8e-100 367.9 229 85.6
Peaxi162Scf00401g00082 Petunia axillaris HOM05D005809 ORTHO05D007259 1.6e-81 306.6 222 78.4
Nitab4.5_0001571g0010 Nicotiana tabacum HOM05D005809 ORTHO05D007259 2.3e-80 302.8 242 72.7
Nitab4.5_0005653g0040 Nicotiana tabacum HOM05D005809 ORTHO05D007259 2.3e-80 302.8 229 74.7
QL02p093215 Quercus lobata HOM05D005809 ORTHO05D007259 5.1e-72 275.0 237 61.6
Dinv41380 Davidia involucrata HOM05D005809 ORTHO05D007259 6.7e-72 274.6 236 64.8
MSTRG.19648 Avicennia marina HOM05D005809 ORTHO05D007259 8.8e-72 274.2 229 65.5
SalBow1G5910 Salvia bowleyana HOM05D005809 ORTHO05D007259 2.5e-71 272.7 229 66.4
Migut.J01341 Erythranthe guttata HOM05D005809 ORTHO05D007259 1.3e-70 270.4 229 63.3
Dinv43244 Davidia involucrata HOM05D005809 ORTHO05D007259 1.1e-69 267.3 235 62.1
CARHR271730 Cardamine hirsuta HOM05D005809 ORTHO05D007259 2.6e-68 262.7 231 63.6
CSS0045900 Camellia sinensis var. sinensis HOM05D005809 ORTHO05D007259 3.4e-68 262.3 235 60.4
Hma1.2p1_0222F.1_g093550 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 4.5e-68 261.9 236 63.1
Thecc.09G030800 Theobroma cacao HOM05D005809 ORTHO05D007259 4.5e-68 261.9 235 61.3
Gohir.D05G056000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 5.9e-68 261.5 232 61.2
Carub.0008s1848 Capsella rubella HOM05D005809 ORTHO05D007259 1.0e-67 260.8 231 62.8
AL8G34030 Arabidopsis lyrata HOM05D005809 ORTHO05D007259 1.3e-67 260.4 231 62.3
Atru.chr7.51 Acer truncatum HOM05D005809 ORTHO05D007259 2.2e-67 259.6 235 62.1
Eucgr.C02542 Eucalyptus grandis HOM05D005809 ORTHO05D007259 2.2e-67 259.6 236 61.9
Gorai.009G057000 Gossypium raimondii HOM05D005809 ORTHO05D007259 3.8e-67 258.8 232 60.3
Ciclev10009378m.g Citrus clementina HOM05D005809 ORTHO05D007259 5.0e-67 258.5 235 61.7
Oeu052197.1 Olea europaea HOM05D005809 ORTHO05D007259 5.0e-67 258.5 230 63.0
Eucgr.C02492 Eucalyptus grandis HOM05D005809 ORTHO05D007259 1.1e-66 257.3 236 61.9
Sp6g19620 Schrenkiella parvula HOM05D005809 ORTHO05D007259 1.1e-66 257.3 234 61.1
RcHm_v2.0_Chr2g0085671 Rosa chinensis HOM05D005809 ORTHO05D007259 1.4e-66 256.9 230 61.7
vmacro16802 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 1.9e-66 256.5 282 53.9
Duzib187G1947 Durio zibethinus HOM05D005809 ORTHO05D007259 2.5e-66 256.1 230 59.1
FvH4_1g00940 Fragaria vesca HOM05D005809 ORTHO05D007259 3.2e-66 255.8 230 60.9
Sabra06G0140200 Salix brachista HOM05D005809 ORTHO05D007259 3.2e-66 255.8 238 60.9
GSVIVG01023603001 Vitis vinifera HOM05D005809 ORTHO05D007259 4.2e-66 255.4 235 59.1
COL.COLO4_18808 Corchorus olitorius HOM05D005809 ORTHO05D007259 5.5e-66 255.0 234 58.5
Thhalv10014592m.g Eutrema salsugineum HOM05D005809 ORTHO05D007259 3.6e-65 252.3 234 60.3
AT5G57950 Arabidopsis thaliana HOM05D005809 ORTHO05D007259 4.7e-65 251.9 234 61.5
BraA10t43609Z Brassica rapa HOM05D005809 ORTHO05D007259 4.7e-65 251.9 229 62.0
CiPaw.15G168900 Carya illinoinensis HOM05D005809 ORTHO05D007259 4.7e-65 251.9 235 60.0
CANSAT11G2656 Cannabis sativa HOM05D005809 ORTHO05D007259 7.9e-65 251.1 230 60.0
Rhsim01G0033400 Rhododendron simsii HOM05D005809 ORTHO05D007259 7.9e-65 251.1 236 58.9
Prupe.7G262800 Prunus persica HOM05D005809 ORTHO05D007259 1.0e-64 250.8 230 59.1
Glyma.06G219200 Glycine max HOM05D005809 ORTHO05D007259 1.4e-64 250.4 235 57.9
Nn8g39891 Nelumbo nucifera HOM05D005809 ORTHO05D007259 1.8e-64 250.0 230 58.7
Aa31LG3G13770 Aethionema arabicum HOM05D000853 ORTHO05D000723 2.3e-64 249.6 235 59.6
Potri.006G184600 Populus trichocarpa HOM05D005809 ORTHO05D007259 3.0e-64 249.2 230 62.6
Cpa.g.sc46.154 Carica papaya HOM05D005809 ORTHO05D007259 3.9e-64 248.8 233 58.4
FAN23G2666 Fragaria x ananassa HOM05D005809 ORTHO05D007259 5.1e-64 248.4 230 60.9
Phvul.009G195100 Phaseolus vulgaris HOM05D005809 ORTHO05D007259 5.1e-64 248.4 228 57.9
Duzib168G0271 Durio zibethinus HOM05D005809 ORTHO05D007259 6.7e-64 248.1 232 58.6
Lj6g0016819 Lotus japonicus HOM05D005809 ORTHO05D007259 8.8e-64 247.7 233 56.2
TWI34G1090 Tripterygium wilfordii HOM05D005809 ORTHO05D007259 1.1e-63 247.3 237 59.5
MD02G1007700 Malus domestica HOM05D005809 ORTHO05D007259 1.5e-63 246.9 230 59.1
SGA_v2.0_scaffold265G46107 Striga asiatica HOM05D005809 ORTHO05D007259 2.6e-63 246.1 229 59.8
A10p16200 Brassica napus HOM05D005809 ORTHO05D007259 3.3e-63 245.7 229 61.1
Glyma.06G219400 Glycine max HOM05D005809 ORTHO05D007259 1.3e-62 243.8 228 57.0
TAR636G3217 Trochodendron aralioides HOM05D005809 ORTHO05D007259 1.3e-62 243.8 239 57.7
Lsat_1_v5_gn_8_63301 Lactuca sativa HOM05D005809 ORTHO05D007259 1.7e-62 243.4 236 58.5
Lalb_Chr23g0275681 Lupinus albus HOM05D005809 ORTHO05D007259 2.2e-62 243.0 235 56.6
TPR.G20735 Trifolium pratense HOM05D005809 ORTHO05D007259 2.2e-62 243.0 234 56.8
THA.LOC104817821 Tarenaya hassleriana HOM05D005809 ORTHO05D007259 2.8e-62 242.7 230 59.6
TWI32G0918 Tripterygium wilfordii HOM05D005809 ORTHO05D007259 2.8e-62 242.7 237 57.4
Ca_03733_v3 Cicer arietinum L. HOM05D005809 ORTHO05D007259 3.7e-62 242.3 237 55.3
arahy.Tifrunner.gnm1.ann1.46B1EJ Arachis hypogaea HOM05D005809 ORTHO05D007259 4.8e-62 241.9 235 56.6
MELO3C004136.2 Cucumis melo HOM05D005809 ORTHO05D007259 1.1e-61 240.7 234 56.8
Manes.06G033951 Manihot esculenta HOM05D005809 ORTHO05D007259 1.4e-61 240.4 235 57.9
Haze_19206 Corylus avellana HOM05D005809 ORTHO05D007259 1.8e-61 240.0 228 59.2
Aqoxy2G02328 Aquilegia oxysepala HOM05D005809 ORTHO05D007259 2.4e-61 239.6 228 57.9
CsaV3_2G007490 Cucumis sativus L. HOM05D005809 ORTHO05D007259 2.4e-61 239.6 234 57.3
BolC9t57830H Brassica oleracea HOM05D005809 ORTHO05D007259 3.1e-61 239.2 228 59.6
Psat1g021800 Pisum sativum HOM05D005809 ORTHO05D007259 4.1e-61 238.8 228 57.0
C09p49790 Brassica napus HOM05D005809 ORTHO05D007259 5.3e-61 238.4 228 59.6
Sc08g0005640 Simmondsia chinensis HOM05D005809 ORTHO05D007259 5.3e-61 238.4 229 57.6
PGR102G1797 Punica granatum HOM05D005809 ORTHO05D007259 7.0e-61 238.0 231 55.8
Medtr2g460780 Medicago truncatula HOM05D005809 ORTHO05D007259 9.1e-61 237.7 232 55.6
HanXRQChr17g0552351 Helianthus annuus HOM05D005809 ORTHO05D007259 2.0e-60 236.5 228 57.9
Ah.02g128190 Amaranthus hybridus HOM05D005809 ORTHO05D007259 2.6e-60 236.1 228 55.7
arahy.Tifrunner.gnm1.ann1.Z5GGTZ Arachis hypogaea HOM05D005809 ORTHO05D007259 2.6e-60 236.1 235 56.6
Sed0001225 Sechium edule HOM05D005809 ORTHO05D007259 7.7e-60 234.6 235 56.2
ECA247G0266 Erigeron canadensis HOM05D005809 ORTHO05D007259 1.3e-59 233.8 229 58.5
DCAR_017909 Daucus carota HOM05D005809 ORTHO05D007259 1.7e-59 233.4 245 53.9
unitig_746.g26584 Utricularia gibba HOM05D005809 ORTHO05D007259 1.0e-56 224.2 228 54.8
ATR0739G206 Amborella trichopoda HOM05D005809 ORTHO05D007259 1.4e-56 223.8 241 53.1
Gohir.A05G055000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 8.8e-56 221.1 232 55.2
ClCG02G014530 Citrullus lanatus HOM05D005809 ORTHO05D007259 1.1e-53 214.2 223 53.8
Os09g0420600 Oryza sativa ssp. japonica HOM05D005809 ORTHO05D007259 1.0e-51 207.6 228 50.0
PSO782G1751 Papaver somniferum HOM05D005809 ORTHO05D007259 1.7e-51 206.8 228 50.9
Hund01517 Selenicereus undatus HOM05D005809 ORTHO05D007259 1.7e-51 206.8 228 52.6
PSO063G2086 Papaver somniferum HOM05D005809 ORTHO05D007259 6.5e-51 204.9 228 50.4
Actinidia04301 Actinidia chinensis HOM05D005809 ORTHO05D007259 1.1e-50 204.1 229 52.8
HPP92_016019 Vanilla planifolia HOM05D005809 ORTHO05D007259 1.9e-50 203.4 228 50.4
Zm00001eb312980 Zea mays HOM05D005809 ORTHO05D007259 1.9e-50 203.4 228 49.1
SEGI_31268 Sequoiadendron giganteum HOM05D005809 ORTHO05D007259 3.0e-48 196.1 235 48.9
FAN28G0834 Fragaria x ananassa HOM05D005809 ORTHO05D007259 6.8e-48 194.9 230 50.4
Lj9C717G7 Lonicera japonica HOM05D005809 ORTHO05D007259 4.4e-47 192.2 228 50.9
Pp3c8_2960 Physcomitrium patens HOM05D005809 ORTHO05D007259 8.3e-46 188.0 234 47.0
Actinidia38322 Actinidia chinensis HOM05D005809 ORTHO05D007259 1.1e-45 187.6 177 60.5
vmacro05441 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 1.1e-45 187.6 188 56.4
CDE12G0564 Ceratophyllum demersum HOM05D005809 ORTHO05D007259 2.4e-45 186.4 254 44.9
SMO361G0248 Selaginella moellendorffii HOM05D005809 ORTHO05D007259 2.4e-45 186.4 233 48.5
SMO361G0343 Selaginella moellendorffii HOM05D005809 ORTHO05D007259 4.1e-45 185.7 233 48.1
AUR62035200 Chenopodium quinoa HOM05D005809 ORTHO05D007259 2.7e-44 183.0 228 47.4
HPP92_016035 Vanilla planifolia HOM05D005809 ORTHO05D007259 2.7e-44 183.0 208 51.0
Mapoly0003s0072 Marchantia polymorpha HOM05D005809 ORTHO05D007259 5.9e-44 181.8 243 45.7
AagrBONN_evm.TU.Sc2ySwM_117.3948 Anthoceros agrestis HOM05D005809 ORTHO05D007259 4.2e-42 175.6 237 46.0
Pp3c16_13530 Physcomitrium patens HOM05D005809 ORTHO05D007259 4.2e-42 175.6 222 45.5
SHI02853 Sapria himalayana HOM05D005809 ORTHO05D007259 7.2e-42 174.9 223 47.1
Dinv42856 Davidia involucrata HOM05D005809 ORTHO05D007259 3.4e-39 166.0 157 57.3
Hma1.2p1_0010F.1_g006710 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 1.3e-38 164.1 164 58.5
Sed0002126 Sechium edule HOM05D005809 ORTHO05D007259 9.1e-37 157.9 177 52.5
Cc06_g14980 Coffea canephora HOM05D005809 ORTHO05D007259 6.3e-30 135.2 114 62.3
CBR_g38078 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-29 133.3 278 31.3
Cc06_g14990 Coffea canephora HOM05D005809 ORTHO05D007259 4.1e-29 132.5 102 67.6
Aa31LG1G19310 Aethionema arabicum HOM05D005809 ORTHO05D007259 3.5e-28 129.4 92 69.6
EL10As1g23143 Beta vulgaris HOM05D005809 ORTHO05D007259 6.6e-27 125.2 106 63.2
RcHm_v2.0_Chr5g0031291 Rosa chinensis HOM05D005809 ORTHO05D007259 3.6e-25 119.4 132 52.3
FAN21G3780 Fragaria x ananassa HOM05D005809 ORTHO05D007259 8.0e-25 118.2 199 40.2
FAN25G0559 Fragaria x ananassa HOM05D005809 ORTHO05D007259 1.7e-22 110.5 108 53.7
Hma1.2p1_0222F.1_g093570 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 4.9e-22 109.0 79 73.4
MCO13G469 Micromonas commoda HOM05D005809 ORTHO05D007259 1.4e-21 107.5 224 33.9
Oeu049715.1 Olea europaea HOM05D005809 ORTHO05D007259 9.5e-18 94.7 88 53.4
FvH4_3g18530 Fragaria vesca HOM05D005809 ORTHO05D007259 3.6e-17 92.8 178 37.6
FAN11G2737 Fragaria x ananassa HOM05D005809 ORTHO05D007259 3.6e-17 92.8 178 37.6
Oeu007777.1 Olea europaea HOM05D005809 ORTHO05D007259 1.1e-16 91.3 90 52.2
EL10As1g23140 Beta vulgaris HOM05D005809 ORTHO05D007259 1.4e-16 90.9 75 65.3
PRCOL_00000214 Prasinoderma coloniale HOM05D005809 ORTHO05D007259 1.4e-16 90.9 207 31.9
Oeu038698.1 Olea europaea HOM05D005809 ORTHO05D007259 3.1e-16 89.7 90 51.1
Cre04.g226950 Chlamydomonas reinhardtii HOM05D005809 ORTHO05D007259 4.0e-16 89.4 277 29.2
Oeu017561.1 Olea europaea HOM05D005809 ORTHO05D007259 4.4e-15 85.9 90 50.0
MD09G1175000 Malus domestica HOM05D005809 ORTHO05D007259 1.9e-13 80.5 87 58.6
FAN26G2229 Fragaria x ananassa HOM05D005809 ORTHO05D007259 6.0e-12 75.5 57 61.4
CSS0015204 Camellia sinensis var. sinensis HOM05D000853 ORTHO05D000723 3.0e-11 73.2 72 55.6
vmacro11582 Vaccinium macrocarpon HOM05D005809 ORTHO05D010075 5.6e-10 68.9 76 51.3
Oeu029241.1 Olea europaea HOM05D005809 ORTHO05D007259 7.3e-10 68.6 76 43.4
SGA_v2.0_scaffold100G29569 Striga asiatica HOM05D005809 ORTHO05D007259 6.2e-09 65.5 78 51.3
Nitab4.5_0012588g0010 Nicotiana tabacum HOM05D000681 ORTHO05D003965 5.8e-07 58.9 36 88.9


User provided reference genes

Program Settings