Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 4.9e-114 414.5 206 100.0
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 4.4e-107 391.3 206 95.1
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 7.6e-107 390.6 206 94.7
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 3.2e-105 385.2 206 93.2
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 6.0e-104 380.9 205 92.7
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 1.6e-96 356.3 205 86.8
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 3.7e-93 345.1 206 81.6
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 1.8e-92 342.8 206 80.1
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 2.4e-92 342.4 206 80.6
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 1.0e-87 327.0 208 78.8
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 3.0e-87 325.5 206 76.7
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 5.1e-87 324.7 206 78.2
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 8.7e-87 323.9 206 77.2
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 2.5e-86 322.4 206 76.2
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 5.6e-86 321.2 206 76.7
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 3.7e-85 318.5 208 76.0
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 1.8e-84 316.2 207 76.3
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 2.4e-84 315.8 206 75.7
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 9.0e-84 313.9 206 73.8
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 9.0e-84 313.9 206 74.8
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.2e-83 313.5 206 74.3
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 1.2e-83 313.5 206 74.8
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 1.2e-83 313.5 206 74.8
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 2.0e-83 312.8 206 74.3
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 4.5e-83 311.6 206 73.8
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 7.6e-83 310.8 206 75.2
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 1.7e-82 309.7 205 73.2
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 2.2e-82 309.3 206 73.8
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 2.2e-82 309.3 209 75.1
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 2.9e-82 308.9 206 73.8
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 2.9e-82 308.9 206 73.8
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 6.5e-82 307.8 206 75.2
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 1.1e-81 307.0 207 73.9
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 5.5e-81 304.7 206 71.8
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 5.5e-81 304.7 206 72.8
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 1.6e-80 303.1 205 73.2
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 2.1e-80 302.8 207 72.5
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 2.1e-80 302.8 196 74.5
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 1.0e-79 300.4 204 73.5
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 1.0e-79 300.4 205 71.2
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 1.0e-79 300.4 205 73.2
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 1.0e-79 300.4 205 73.2
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 1.3e-79 300.1 204 69.6
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 6.7e-79 297.7 209 70.8
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 8.7e-79 297.4 206 71.8
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 5.7e-78 294.7 206 72.3
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 7.4e-78 294.3 198 73.7
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 1.6e-77 293.1 229 66.4
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 2.8e-77 292.4 206 71.4
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 3.7e-77 292.0 207 71.0
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 3.7e-77 292.0 206 70.4
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 6.3e-77 291.2 207 70.5
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 8.2e-77 290.8 206 71.4
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 1.1e-76 290.4 207 71.5
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 1.8e-76 289.7 207 71.5
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 2.4e-76 289.3 204 70.6
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 6.9e-76 287.7 205 69.3
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 6.9e-76 287.7 207 70.5
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 6.9e-76 287.7 205 71.2
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 1.5e-75 286.6 205 70.2
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 2.0e-75 286.2 200 69.5
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 2.0e-75 286.2 205 70.2
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 2.6e-75 285.8 200 70.0
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 2.6e-75 285.8 208 66.3
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 1.0e-74 283.9 205 68.8
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 1.3e-74 283.5 205 69.3
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 1.3e-74 283.5 205 69.3
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 1.7e-74 283.1 206 67.0
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 2.9e-74 282.3 205 67.8
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 2.9e-74 282.3 205 69.3
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 2.9e-74 282.3 205 67.8
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 2.9e-74 282.3 205 68.8
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 3.8e-74 282.0 200 69.0
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 5.0e-74 281.6 207 69.6
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 6.5e-74 281.2 205 69.3
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 6.5e-74 281.2 206 69.4
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 6.5e-74 281.2 206 69.4
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 8.5e-74 280.8 206 65.5
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 8.5e-74 280.8 200 68.0
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 1.1e-73 280.4 205 68.8
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 1.1e-73 280.4 206 66.5
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 1.1e-73 280.4 206 66.5
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 1.9e-73 279.6 205 68.8
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 2.5e-73 279.3 205 68.8
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 3.2e-73 278.9 208 68.8
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 3.2e-73 278.9 200 69.5
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 7.2e-73 277.7 205 68.3
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 9.3e-73 277.3 204 66.2
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 9.3e-73 277.3 204 66.2
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 9.3e-73 277.3 205 68.8
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 1.6e-72 276.6 205 68.8
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 1.6e-72 276.6 205 68.8
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 1.6e-72 276.6 205 68.8
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 1.6e-72 276.6 211 67.3
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 2.1e-72 276.2 205 68.8
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 3.6e-72 275.4 258 58.5
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 4.6e-72 275.0 206 69.4
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 4.6e-72 275.0 200 68.0
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 6.1e-72 274.6 205 68.3
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 1.0e-71 273.9 200 67.5
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 1.3e-71 273.5 200 67.0
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 1.8e-71 273.1 204 67.2
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 2.3e-71 272.7 207 69.1
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 3.0e-71 272.3 206 65.0
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 3.9e-71 271.9 204 69.1
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 3.9e-71 271.9 200 68.0
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 5.1e-71 271.6 205 67.3
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 5.1e-71 271.6 201 66.2
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 6.7e-71 271.2 204 68.6
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 1.1e-70 270.4 204 67.2
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 5.7e-70 268.1 195 68.7
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 1.3e-69 266.9 215 63.7
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 1.1e-68 263.8 141 92.9
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 1.8e-68 263.1 206 65.5
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 1.2e-67 260.4 207 60.9
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 1.0e-66 257.3 206 59.7
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 1.4e-63 246.9 206 58.7
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 8.2e-61 237.7 195 61.5
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 9.4e-57 224.2 209 53.1
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 4.4e-54 215.3 210 52.9
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 5.7e-54 214.9 216 51.4
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 2.4e-52 209.5 211 52.1
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 3.1e-52 209.1 140 75.0
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 4.1e-52 208.8 147 70.7
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 7.0e-52 208.0 148 73.0
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 1.2e-51 207.2 210 50.0
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 2.0e-51 206.5 207 57.0
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 3.5e-51 205.7 138 74.6
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 4.4e-46 188.7 149 68.5
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 1.8e-44 183.3 208 45.7
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 4.1e-44 182.2 182 56.0
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 1.0e-42 177.6 134 64.2
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 1.5e-38 163.7 127 63.0
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 1.1e-25 120.9 192 35.4
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 2.5e-25 119.8 192 35.4
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 1.6e-24 117.1 128 46.1
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 1.8e-23 113.6 199 37.7
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 2.6e-22 109.8 139 47.5
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 3.4e-22 109.4 73 65.8
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 7.0e-20 101.7 67 71.6
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 2.0e-19 100.1 67 70.1
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 6.0e-19 98.6 101 51.5
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.0e-18 97.8 69 73.9
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 6.8e-15 85.1 74 60.8
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 3.7e-13 79.3 51 72.5
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 9.2e-12 74.7 63 58.7
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.5e-09 67.4 68 51.5
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.9e-09 67.0 50 68.0
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.9e-09 67.0 50 68.0
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 1.6e-08 63.9 116 31.0
Hund22175 Selenicereus undatus HOM05D004943 ORTHO05D005953 3.1e-07 59.7 42 59.5
CBR_g17083 Chara braunii HOM05D004943 ORTHO05D005953 4.4e-06 55.8 81 30.9


User provided reference genes

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