Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G160.11 Capsicum annuum HOM05D006325 ORTHO05D007878 6.6e-36 153.7 87 100.0
PGSC0003DMG403011204 Solanum tuberosum HOM05D006325 ORTHO05D007878 2.0e-32 142.1 87 95.4
PGSC0003DMG402022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 4.9e-31 137.5 87 92.0
CAN.G160.12 Capsicum annuum HOM05D006325 ORTHO05D007878 1.0e-28 129.8 110 73.6
PGSC0003DMG400011149 Solanum tuberosum HOM05D006325 ORTHO05D007878 6.2e-26 120.6 87 82.8
Nitab4.5_0003551g0100 Nicotiana tabacum HOM05D006325 ORTHO05D007878 1.4e-25 119.4 83 84.3
Nitab4.5_0003551g0110 Nicotiana tabacum HOM05D006325 ORTHO05D007878 5.2e-25 117.5 82 85.4
CAN.G160.10 Capsicum annuum HOM05D006325 ORTHO05D007878 1.2e-24 116.3 107 69.2
CAN.G2122.1 Capsicum annuum HOM05D006325 ORTHO05D007878 2.6e-24 115.2 107 68.2
Sopen07g002010 Solanum pennellii HOM05D006325 ORTHO05D007878 2.6e-24 115.2 89 80.9
PGSC0003DMG401022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 2.6e-24 115.2 87 80.5
Nitab4.5_0002611g0130 Nicotiana tabacum HOM05D006325 ORTHO05D007878 1.6e-21 105.9 87 74.7
Solyc11g020860.1 Solanum lycopersicum HOM05D006325 ORTHO05D007878 9.5e-19 96.7 87 69.0
Hma1.2p1_0594F.1_g185940 Hydrangea macrophylla HOM05D006325 ORTHO05D007878 1.2e-18 96.3 87 67.8
Sopen07g002000 Solanum pennellii HOM05D006325 ORTHO05D007878 1.1e-17 93.2 87 67.8
CAN.G2122.2 Capsicum annuum HOM05D006325 ORTHO05D007878 3.1e-17 91.7 79 70.9
PGSC0003DMG400009263 Solanum tuberosum HOM05D006325 ORTHO05D007878 4.0e-17 91.3 87 64.4
Sopen11g011030 Solanum pennellii HOM05D006325 ORTHO05D007878 6.8e-17 90.5 87 64.4
CSS0005985 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 2.6e-16 88.6 82 63.4
CAN.G160.9 Capsicum annuum HOM05D006325 ORTHO05D007878 4.4e-16 87.8 87 64.4
CSS0005499 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 5.8e-16 87.4 82 62.2
Phvul.002G178300 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 2.9e-15 85.1 87 56.3
Phvul.002G179400 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 2.9e-15 85.1 87 56.3
MD10G1258900 Malus domestica HOM05D006325 ORTHO05D007878 4.2e-14 81.3 99 52.5
Nn3g20453 Nelumbo nucifera HOM05D006325 ORTHO05D007878 9.2e-14 80.1 86 61.6
Peaxi162Scf00062g00009 Petunia axillaris HOM05D006325 ORTHO05D007878 7.8e-13 77.0 61 75.4
Ca_18164_v3 Cicer arietinum L. HOM05D006325 ORTHO05D007878 1.0e-12 76.6 85 54.1
Potri.011G081001 Populus trichocarpa HOM05D006325 ORTHO05D007878 1.3e-12 76.3 87 51.7
Prupe.4G084800 Prunus persica HOM05D006325 ORTHO05D007878 2.3e-12 75.5 100 51.0
Ciclev10026858m.g Citrus clementina HOM05D006325 ORTHO05D007878 5.1e-12 74.3 86 53.5
Lalb_Chr13g0293971 Lupinus albus HOM05D006325 ORTHO05D007878 6.6e-12 73.9 93 53.8
CiPaw.10G089300 Carya illinoinensis HOM05D006325 ORTHO05D007878 1.1e-11 73.2 85 54.1
Cc00_g01980 Coffea canephora HOM05D006325 ORTHO05D007878 1.1e-11 73.2 85 54.1
Potri.004G133180 Populus trichocarpa HOM05D006325 ORTHO05D007878 1.5e-11 72.8 84 52.4
FvH4_3g05130 Fragaria vesca HOM05D006325 ORTHO05D007878 1.9e-11 72.4 91 53.8
Nitab4.5_0008310g0030 Nicotiana tabacum HOM05D006325 ORTHO05D007878 1.9e-11 72.4 65 67.7
Sabra11G0064500 Salix brachista HOM05D006325 ORTHO05D007878 1.9e-11 72.4 87 49.4
Sed0008419 Sechium edule HOM05D006325 ORTHO05D007878 1.9e-11 72.4 83 54.2
Thecc.06G145500 Theobroma cacao HOM05D006325 ORTHO05D007878 2.5e-11 72.0 93 52.7
CiPaw.09G120800 Carya illinoinensis HOM05D006325 ORTHO05D007878 5.6e-11 70.9 87 51.7
Glyma.08G099000 Glycine max HOM05D006325 ORTHO05D007878 5.6e-11 70.9 91 49.5
Lsat_1_v5_gn_0_34220 Lactuca sativa HOM05D006325 ORTHO05D007878 7.3e-11 70.5 87 49.4
TWI09G0296 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 7.3e-11 70.5 102 46.1
Ciclev10017179m.g Citrus clementina HOM05D006325 ORTHO05D007878 9.6e-11 70.1 90 52.2
RcHm_v2.0_Chr5g0014631 Rosa chinensis HOM05D006325 ORTHO05D007878 9.6e-11 70.1 95 50.5
TPR.G34042 Trifolium pratense HOM05D006325 ORTHO05D007878 9.6e-11 70.1 83 51.8
Ciclev10026747m.g Citrus clementina HOM05D006325 ORTHO05D007878 1.3e-10 69.7 83 53.0
DCAR_007876 Daucus carota HOM05D006325 ORTHO05D007878 1.3e-10 69.7 88 50.0
Medtr5g077640 Medicago truncatula HOM05D006325 ORTHO05D007878 1.3e-10 69.7 85 55.3
AL1G44210 Arabidopsis lyrata HOM05D006325 ORTHO05D007878 1.6e-10 69.3 92 52.2
MELO3C007112.2 Cucumis melo HOM05D006325 ORTHO05D007878 1.6e-10 69.3 87 51.7
TWI53G1846 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 1.6e-10 69.3 102 46.1
CsaV3_6G051960 Cucumis sativus L. HOM05D006325 ORTHO05D007878 2.1e-10 68.9 82 54.9
QL05p055432 Quercus lobata HOM05D006325 ORTHO05D007878 2.1e-10 68.9 87 49.4
Psat7g080440 Pisum sativum HOM05D006325 ORTHO05D007878 3.6e-10 68.2 93 48.4
FAN11G2857 Fragaria x ananassa HOM05D006325 ORTHO05D007878 8.1e-10 67.0 91 50.5
FAN21G1261 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.4e-09 66.2 91 49.5
Medtr4g083110 Medicago truncatula HOM05D006325 ORTHO05D007878 1.4e-09 66.2 83 51.8
Psat7g080360 Pisum sativum HOM05D006325 ORTHO05D007878 1.4e-09 66.2 89 46.1
TPR.G13312 Trifolium pratense HOM05D006325 ORTHO05D007878 1.4e-09 66.2 92 48.9
Duzib192G0952 Durio zibethinus HOM05D006325 ORTHO05D007878 1.8e-09 65.9 94 46.8
FAN25G3009 Fragaria x ananassa HOM05D006325 ORTHO05D007878 2.4e-09 65.5 91 49.5
Eucgr.D00273 Eucalyptus grandis HOM05D006325 ORTHO05D007878 4.0e-09 64.7 101 48.5
Lsat_1_v5_gn_7_27621 Lactuca sativa HOM05D006325 ORTHO05D007878 4.0e-09 64.7 95 45.3
BraA09t39151Z Brassica rapa HOM05D006325 ORTHO05D007878 5.3e-09 64.3 94 48.9
Carub.0001s2849 Capsella rubella HOM05D006325 ORTHO05D007878 5.3e-09 64.3 64 57.8
Glyma.05G143000 Glycine max HOM05D006325 ORTHO05D007878 5.3e-09 64.3 90 48.9
Manes.17G073700 Manihot esculenta HOM05D006325 ORTHO05D007878 5.3e-09 64.3 84 47.6
TPR.G21965 Trifolium pratense HOM05D006325 ORTHO05D007878 5.3e-09 64.3 92 47.8
BcaB07g32625 Brassica carinata HOM05D006325 ORTHO05D007878 6.9e-09 63.9 94 47.9
A09p36260 Brassica napus HOM05D006325 ORTHO05D007878 9.0e-09 63.5 95 48.4
Haze_05647 Corylus avellana HOM05D006325 ORTHO05D007878 1.2e-08 63.2 85 47.1
Oeu030957.1 Olea europaea HOM05D006325 ORTHO05D007878 1.2e-08 63.2 61 62.3
BcaC05g27053 Brassica carinata HOM05D006325 ORTHO05D007878 1.5e-08 62.8 95 47.4
BolC5t31641H Brassica oleracea HOM05D006325 ORTHO05D007878 1.5e-08 62.8 95 47.4
Cpa.g.sc17.42 Carica papaya HOM05D006325 ORTHO05D007878 1.5e-08 62.8 91 48.4
FAN16G1041 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.5e-08 62.8 91 48.4
FAN16G2667 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.5e-08 62.8 91 48.4
Psat7g080320 Pisum sativum HOM05D006325 ORTHO05D007878 2.0e-08 62.4 88 46.6
BcaC06g35496 Brassica carinata HOM05D006325 ORTHO05D007878 2.6e-08 62.0 90 51.1
C05p29100 Brassica napus HOM05D006325 ORTHO05D007878 2.6e-08 62.0 73 54.8
Thhalv10009295m.g Eutrema salsugineum HOM05D006325 ORTHO05D007878 2.6e-08 62.0 65 55.4
A07p10030 Brassica napus HOM05D006325 ORTHO05D007878 3.4e-08 61.6 72 56.9
BolC7t42032H Brassica oleracea HOM05D006325 ORTHO05D007878 3.4e-08 61.6 72 56.9
BraA07t28796Z Brassica rapa HOM05D006325 ORTHO05D007878 3.4e-08 61.6 72 56.9
Oeu030955.1 Olea europaea HOM05D006325 ORTHO05D007878 3.4e-08 61.6 38 78.9
Aa31LG6G5500 Aethionema arabicum HOM05D006325 ORTHO05D007878 4.4e-08 61.2 45 66.7
ClCG03G006550 Citrullus lanatus HOM05D006325 ORTHO05D007878 5.8e-08 60.8 93 45.2
Lalb_Chr07g0187521 Lupinus albus HOM05D006325 ORTHO05D007878 5.8e-08 60.8 102 42.2
PSO541G2396 Papaver somniferum HOM05D006325 ORTHO05D007878 5.8e-08 60.8 98 44.9
AT1G30260 Arabidopsis thaliana HOM05D006325 ORTHO05D007878 7.6e-08 60.5 58 58.6
BcaB03g13839 Brassica carinata HOM05D006325 ORTHO05D007878 7.6e-08 60.5 72 55.6
Sp1g26100 Schrenkiella parvula HOM05D006325 ORTHO05D007878 7.6e-08 60.5 73 50.7
ClCG01G024840 Citrullus lanatus HOM05D006325 ORTHO05D007878 9.9e-08 60.1 83 47.0
CANSAT35G0285 Cannabis sativa HOM05D006325 ORTHO05D007878 1.3e-07 59.7 98 44.9
Gorai.009G153100 Gossypium raimondii HOM05D006325 ORTHO05D007878 2.2e-07 58.9 92 48.9
QL04p045948 Quercus lobata HOM05D006325 ORTHO05D007878 2.9e-07 58.5 77 49.4
CARHR029650 Cardamine hirsuta HOM05D006325 ORTHO05D007878 3.8e-07 58.2 51 60.8
Lj4g0010729 Lotus japonicus HOM05D006325 ORTHO05D007878 3.8e-07 58.2 88 43.2
Nn4g26622 Nelumbo nucifera HOM05D006325 ORTHO05D007878 3.8e-07 58.2 52 61.5
MELO3C002763.2 Cucumis melo HOM05D006325 ORTHO05D007878 4.9e-07 57.8 88 43.2
Medtr5g077680 Medicago truncatula HOM05D006325 ORTHO05D007878 6.4e-07 57.4 46 60.9
Medtr8g079458 Medicago truncatula HOM05D006325 ORTHO05D007878 6.4e-07 57.4 46 60.9
QL04p045922 Quercus lobata HOM05D006325 ORTHO05D007878 6.4e-07 57.4 75 46.7
Gohir.D05G149100 Gossypium hirsutum HOM05D006325 ORTHO05D007878 8.4e-07 57.0 91 47.3
CsaV3_1G036810 Cucumis sativus L. HOM05D006325 ORTHO05D007878 1.4e-06 56.2 88 45.5
Gohir.A05G146600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 1.4e-06 56.2 91 46.2
Medtr1437s0010 Medicago truncatula HOM05D006325 ORTHO05D007878 1.9e-06 55.8 39 66.7
Medtr4g012020 Medicago truncatula HOM05D006325 ORTHO05D007878 1.9e-06 55.8 46 58.7
Aqoxy4G00063 Aquilegia oxysepala HOM05D006325 ORTHO05D007878 3.2e-06 55.1 83 42.2
Lj4g0007216 Lotus japonicus HOM05D006325 ORTHO05D007878 3.2e-06 55.1 90 44.4
Duzib160G0583 Durio zibethinus HOM05D006325 ORTHO05D007878 5.4e-06 54.3 85 44.7
MBI18_g11235_MAGBIO Magnolia biondii HOM05D006325 ORTHO05D007878 5.4e-06 54.3 85 43.5
Manes.15G124400 Manihot esculenta HOM05D006325 ORTHO05D007878 7.1e-06 53.9 63 52.4


User provided reference genes

Program Settings