Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1596.6 Capsicum annuum HOM05D001860 ORTHO05D004239 1.1e-38 162.9 85 100.0
CAN.G1596.4 Capsicum annuum HOM05D001860 ORTHO05D004239 1.6e-34 149.1 83 94.0
Sopen05g003680 Solanum pennellii HOM05D001860 ORTHO05D004239 1.5e-29 132.5 83 86.7
Nitab4.5_0000040g0150 Nicotiana tabacum HOM05D001860 ORTHO05D004239 3.8e-28 127.9 83 83.1
PGSC0003DMG400018432 Solanum tuberosum HOM05D001860 ORTHO05D004239 1.1e-27 126.3 83 84.3
Peaxi162Scf00222g00063 Petunia axillaris HOM05D001860 ORTHO05D004239 1.9e-27 125.6 84 82.1
Nitab4.5_0004623g0030 Nicotiana tabacum HOM05D001860 ORTHO05D004239 2.4e-27 125.2 83 81.9
Solyc05g007820.4 Solanum lycopersicum HOM05D001860 ORTHO05D004239 2.8e-23 111.7 73 84.9
Dinv34137 Davidia involucrata HOM05D001860 ORTHO05D004239 4.2e-19 97.8 82 65.9
Cc00_g21790 Coffea canephora HOM05D001860 ORTHO05D004239 9.7e-16 86.7 75 62.7
Cc11_g12820 Coffea canephora HOM05D001860 ORTHO05D004239 9.7e-16 86.7 75 62.7
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 3.7e-15 84.7 83 60.2
Lj6A786T64 Lonicera japonica HOM05D001860 ORTHO05D004239 1.1e-14 83.2 81 58.0
Hma1.2p1_1079F.1_g254980 Hydrangea macrophylla HOM05D001860 ORTHO05D004239 4.1e-14 81.3 82 56.1
Actinidia27672 Actinidia chinensis HOM05D001860 ORTHO05D004239 9.0e-14 80.1 76 63.2
Oeu005752.1 Olea europaea HOM05D001860 ORTHO05D004239 9.0e-14 80.1 65 69.2
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.5e-13 79.3 84 59.5
vmacro01266 Vaccinium macrocarpon HOM05D001860 ORTHO05D004239 1.5e-13 79.3 83 60.2
Hund25223 Selenicereus undatus HOM05D001860 ORTHO05D004239 3.4e-13 78.2 83 57.8
AUR62005815 Chenopodium quinoa HOM05D001860 ORTHO05D004239 1.0e-12 76.6 83 55.4
Rhsim12G0064500 Rhododendron simsii HOM05D001860 ORTHO05D004239 1.7e-12 75.9 83 57.8
Sc11g0002050 Simmondsia chinensis HOM05D001860 ORTHO05D004239 3.8e-12 74.7 83 57.8
EL10Ac6g13235 Beta vulgaris HOM05D001860 ORTHO05D004239 6.5e-12 73.9 83 55.4
CSS0043167 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004239 6.5e-12 73.9 75 58.7
AUR62032809 Chenopodium quinoa HOM05D001860 ORTHO05D004239 6.5e-12 73.9 83 53.0
MSTRG.714 Avicennia marina HOM05D001860 ORTHO05D004239 1.9e-11 72.4 88 58.0
QL03p068534 Quercus lobata HOM05D001860 ORTHO05D004239 1.9e-11 72.4 80 61.2
FAN17G2207 Fragaria x ananassa HOM05D001860 ORTHO05D004239 3.2e-11 71.6 81 58.0
Migut.L01274 Erythranthe guttata HOM05D001860 ORTHO05D004239 5.5e-11 70.9 76 57.9
MD13G1070100 Malus domestica HOM05D001860 ORTHO05D004239 7.2e-11 70.5 81 54.3
RcHm_v2.0_Chr4g0439521 Rosa chinensis HOM05D001860 ORTHO05D004239 7.2e-11 70.5 81 58.0
Prupe.1G276800 Prunus persica HOM05D001860 ORTHO05D004239 1.6e-10 69.3 80 56.2
Glyma.01G050400 Glycine max HOM05D001860 ORTHO05D004239 2.1e-10 68.9 80 52.5
Dinv16665 Davidia involucrata HOM05D001860 ORTHO05D004239 2.7e-10 68.6 74 56.8
CiPaw.05G132800 Carya illinoinensis HOM05D001860 ORTHO05D004239 7.9e-10 67.0 84 53.6
Eucgr.B03212 Eucalyptus grandis HOM05D001860 ORTHO05D004239 7.9e-10 67.0 84 50.0
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 7.9e-10 67.0 81 55.6
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.4e-09 66.2 81 55.6
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.8e-09 65.9 81 55.6
Actinidia12295 Actinidia chinensis HOM05D001860 ORTHO05D004239 2.3e-09 65.5 81 54.3
CsaV3_5G032880 Cucumis sativus L. HOM05D001860 ORTHO05D004239 2.3e-09 65.5 85 50.6
THA.LOC104805168 Tarenaya hassleriana HOM05D001860 ORTHO05D004239 2.3e-09 65.5 78 52.6
Oeu028274.1 Olea europaea HOM05D001860 ORTHO05D004239 3.9e-09 64.7 84 53.6
CANSAT64G2374 Cannabis sativa HOM05D001860 ORTHO05D004239 5.1e-09 64.3 82 51.2
ClCG05G024140 Citrullus lanatus HOM05D001860 ORTHO05D004239 5.1e-09 64.3 85 50.6
Ciclev10031680m.g Citrus clementina HOM05D001860 ORTHO05D004239 8.8e-09 63.5 81 55.6
MD16G1070500 Malus domestica HOM05D001860 ORTHO05D004239 8.8e-09 63.5 81 50.6
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 1.9e-08 62.4 76 55.3
Sed0006733 Sechium edule HOM05D001860 ORTHO05D004239 1.9e-08 62.4 84 45.2
Oeu021059.3 Olea europaea HOM05D001860 ORTHO05D004239 2.5e-08 62.0 72 55.6
Phvul.002G083400 Phaseolus vulgaris HOM05D001860 ORTHO05D004239 2.5e-08 62.0 80 48.8
TAR315G0003 Trochodendron aralioides HOM05D001860 ORTHO05D004239 3.3e-08 61.6 77 51.9
VMungo1215G3190 Vigna mungo HOM05D001860 ORTHO05D004239 3.3e-08 61.6 80 47.5
ECA233G2043 Erigeron canadensis HOM05D001860 ORTHO05D004239 5.7e-08 60.8 64 56.2
FvH4_4g31130 Fragaria vesca HOM05D001860 ORTHO05D004239 5.7e-08 60.8 76 55.3
Actinidia19882 Actinidia chinensis HOM05D001860 ORTHO05D004239 7.4e-08 60.5 86 48.8
Lalb_Chr17g0340831 Lupinus albus HOM05D001860 ORTHO05D004239 1.3e-07 59.7 81 50.6
PSO832G1893 Papaver somniferum HOM05D001860 ORTHO05D004239 1.3e-07 59.7 71 54.9
Atru.chr11.1761 Acer truncatum HOM05D001860 ORTHO05D004239 1.7e-07 59.3 84 48.8
TAR374G0160 Trochodendron aralioides HOM05D000974 ORTHO05D004239 1.7e-07 59.3 78 55.1
Nn3g17282 Nelumbo nucifera HOM05D001860 ORTHO05D004239 2.2e-07 58.9 76 48.7
Lj2g0002980 Lotus japonicus HOM05D001860 ORTHO05D004239 4.8e-07 57.8 80 50.0
unitig_747.g21181 Utricularia gibba HOM05D001860 ORTHO05D004239 4.8e-07 57.8 66 57.6
Oeu055107.1 Olea europaea HOM05D001860 ORTHO05D004239 8.2e-07 57.0 85 50.6
PSO013G0105 Papaver somniferum HOM05D001860 ORTHO05D004239 8.2e-07 57.0 71 53.5
Aqoxy3G03435 Aquilegia oxysepala HOM05D001860 ORTHO05D004239 1.8e-06 55.8 64 50.0
Lsat_1_v5_gn_3_52080 Lactuca sativa HOM05D001860 ORTHO05D004239 2.4e-06 55.5 66 54.5
Thecc.02G343600 Theobroma cacao HOM05D001860 ORTHO05D004239 4.1e-06 54.7 75 49.3
Glyma.02G109200 Glycine max HOM05D001860 ORTHO05D004239 5.3e-06 54.3 80 45.0
Manes.05G104000 Manihot esculenta HOM05D001860 ORTHO05D004239 5.3e-06 54.3 85 45.9
Os10g0406200 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004239 6.9e-06 53.9 68 52.9


User provided reference genes

Program Settings