Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1594.2 Capsicum annuum HOM05D016096 ORTHO05D016167 6.7e-210 733.8 380 100.0
CAN.G170.34 Capsicum annuum HOM05D016096 ORTHO05D016167 9.5e-39 165.2 100 87.0
CAN.G1021.13 Capsicum annuum HOM05D016096 ORTHO05D016167 2.8e-38 163.7 100 86.0
CAN.G1159.11 Capsicum annuum HOM05D016096 ORTHO05D016167 2.8e-38 163.7 100 86.0
CAN.G1741.5 Capsicum annuum HOM05D016096 ORTHO05D016167 2.8e-38 163.7 100 86.0
CAN.G547.3 Capsicum annuum HOM05D016096 ORTHO05D016167 2.8e-38 163.7 100 86.0
CAN.G1159.9 Capsicum annuum HOM05D016096 ORTHO05D016167 6.2e-38 162.5 100 85.0
CAN.G1077.7 Capsicum annuum HOM05D016096 ORTHO05D016167 1.5e-36 157.9 103 82.5
CAN.G134.25 Capsicum annuum HOM05D001750 ORTHO05D001825 9.0e-21 105.5 112 58.0
Sopen11g018230 Solanum pennellii HOM05D002660 ORTHO05D003902 4.5e-20 103.2 60 90.0
Sed0011513 Sechium edule HOM05D000963 ORTHO05D004715 3.9e-16 90.1 53 86.8
unitig_91.g26522 Utricularia gibba HOM05D000963 ORTHO05D004715 1.5e-15 88.2 66 69.7
unitig_91.g26525 Utricularia gibba HOM05D000963 ORTHO05D004715 1.5e-15 88.2 66 69.7
Rhsim12G0135200 Rhododendron simsii HOM05D000963 ORTHO05D004715 2.5e-15 87.4 58 70.7
BolSC29t60541H Brassica oleracea HOM05D000963 ORTHO05D004715 3.3e-15 87.0 57 71.9
Hma1.2p1_0051F.1_g029250 Hydrangea macrophylla HOM05D000963 ORTHO05D004715 3.3e-15 87.0 42 95.2
Lsat_1_v5_gn_5_181901 Lactuca sativa HOM05D000963 ORTHO05D004715 4.3e-15 86.7 47 87.2
Lsat_1_v5_gn_5_4701 Lactuca sativa HOM05D000963 ORTHO05D004715 4.3e-15 86.7 47 87.2
Dinv39831 Davidia involucrata HOM05D000963 ORTHO05D004715 7.4e-15 85.9 65 69.2
Atru.chr1.3576 Acer truncatum HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
Aqoxy38s008 Aquilegia oxysepala HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
AL9U11970 Arabidopsis lyrata HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
C09p39330 Brassica napus HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
C09p40280 Brassica napus HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
BolC9t56918H Brassica oleracea HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
BolSC37t60787H Brassica oleracea HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
BolSC44t60816H Brassica oleracea HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
BolSC44t60829H Brassica oleracea HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
BolSC45t60916H Brassica oleracea HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
BolSC49t61135H Brassica oleracea HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
BraSC103t45422Z Brassica rapa HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
BraSC103t45433Z Brassica rapa HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
BraSC138t45541Z Brassica rapa HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
BraSC143t45652Z Brassica rapa HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
BraSC25t45904Z Brassica rapa HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
BraSC25t45917Z Brassica rapa HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
BraSC58t46456Z Brassica rapa HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
BraSC59t46533Z Brassica rapa HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
COL.COLO4_02154 Corchorus olitorius HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
Migut.D01391 Erythranthe guttata HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
FvH4_c3g00050 Fragaria vesca HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
Gohir.A02G134101 Gossypium hirsutum HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
Gohir.A05G286366 Gossypium hirsutum HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
Lsat_1_v5_gn_1_88180 Lactuca sativa HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
Lsat_1_v5_gn_2_50801 Lactuca sativa HOM05D000963 ORTHO05D004715 9.6e-15 85.5 43 90.7
Lsat_1_v5_gn_2_97121 Lactuca sativa HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
Lsat_1_v5_gn_8_139840 Lactuca sativa HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
Lsat_1_v5_gn_9_121741 Lactuca sativa HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
QL10p017079 Quercus lobata HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
QL93p0141_0026 Quercus lobata HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
Sed0012027 Sechium edule HOM05D000963 ORTHO05D004715 9.6e-15 85.5 61 68.9
Sed0014585 Sechium edule HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
Sopen06g015060 Solanum pennellii HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
PGSC0003DMG400034831 Solanum tuberosum HOM05D000963 ORTHO05D004715 9.6e-15 85.5 42 92.9
arahy.Tifrunner.gnm1.ann1.54C0KZ Arachis hypogaea HOM05D000963 ORTHO05D004715 1.3e-14 85.1 42 92.9
arahy.Tifrunner.gnm1.ann1.0QCF99 Arachis hypogaea HOM05D000963 ORTHO05D004715 2.1e-14 84.3 50 80.0
arahy.Tifrunner.gnm1.ann1.6K111H Arachis hypogaea HOM05D000963 ORTHO05D004715 2.1e-14 84.3 50 80.0
arahy.Tifrunner.gnm1.ann1.B9EW81 Arachis hypogaea HOM05D000963 ORTHO05D004715 2.1e-14 84.3 50 80.0
arahy.Tifrunner.gnm1.ann1.NMB5YK Arachis hypogaea HOM05D000963 ORTHO05D004715 2.1e-14 84.3 50 80.0
arahy.Tifrunner.gnm1.ann1.QIDR5S Arachis hypogaea HOM05D000963 ORTHO05D004715 2.1e-14 84.3 50 80.0
DCAR_014935 Daucus carota HOM05D000963 ORTHO05D004715 2.1e-14 84.3 42 90.5
Gohir.D04G054150 Gossypium hirsutum HOM05D000963 ORTHO05D004715 2.1e-14 84.3 42 92.9
Sc25g0002020 Simmondsia chinensis HOM05D000963 ORTHO05D004715 2.1e-14 84.3 50 80.0
Gohir.D03G074976 Gossypium hirsutum HOM05D000963 ORTHO05D004715 2.8e-14 84.0 60 70.0
arahy.Tifrunner.gnm1.ann1.0S9V2W Arachis hypogaea HOM05D000963 ORTHO05D004715 3.7e-14 83.6 42 90.5
arahy.Tifrunner.gnm1.ann1.56M0GV Arachis hypogaea HOM05D000963 ORTHO05D004715 3.7e-14 83.6 42 90.5
arahy.Tifrunner.gnm1.ann1.E29LBX Arachis hypogaea HOM05D000963 ORTHO05D004715 3.7e-14 83.6 42 90.5
arahy.Tifrunner.gnm1.ann1.NRNC1F Arachis hypogaea HOM05D000963 ORTHO05D004715 3.7e-14 83.6 42 90.5
arahy.Tifrunner.gnm1.ann1.PH4GL6 Arachis hypogaea HOM05D000963 ORTHO05D004715 3.7e-14 83.6 42 90.5
arahy.Tifrunner.gnm1.ann1.RS9AFF Arachis hypogaea HOM05D000963 ORTHO05D004715 3.7e-14 83.6 42 90.5
arahy.Tifrunner.gnm1.ann1.TDDH8C Arachis hypogaea HOM05D000963 ORTHO05D004715 3.7e-14 83.6 42 90.5
arahy.Tifrunner.gnm1.ann1.UGP0DD Arachis hypogaea HOM05D000963 ORTHO05D004715 3.7e-14 83.6 42 90.5
arahy.Tifrunner.gnm1.ann1.WD30LQ Arachis hypogaea HOM05D000963 ORTHO05D004715 3.7e-14 83.6 42 90.5
arahy.Tifrunner.gnm1.ann1.WSE485 Arachis hypogaea HOM05D000963 ORTHO05D004715 3.7e-14 83.6 42 90.5
arahy.Tifrunner.gnm1.ann1.ZA1EMG Arachis hypogaea HOM05D000963 ORTHO05D004715 3.7e-14 83.6 42 90.5
Potri.011G074033 Populus trichocarpa HOM05D000963 ORTHO05D004715 3.7e-14 83.6 42 90.5
QL93p0141_0000 Quercus lobata HOM05D000963 ORTHO05D004715 3.7e-14 83.6 42 90.5
CAN.G1298.20 Capsicum annuum HOM05D000963 ORTHO05D004715 8.1e-14 82.4 43 88.4
CAN.G67.2 Capsicum annuum HOM05D000963 ORTHO05D004715 8.1e-14 82.4 42 90.5
CAN.G929.1 Capsicum annuum HOM05D000963 ORTHO05D004715 8.1e-14 82.4 43 88.4
Gohir.1Z049781 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.4e-13 81.6 42 90.5
Gohir.A04G057626 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.4e-13 81.6 42 88.1
Gohir.A07G151200 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.8e-13 81.3 42 90.5
Gohir.D04G096676 Gossypium hirsutum HOM05D000963 ORTHO05D004715 2.4e-13 80.9 71 57.7
Nitab4.5_0000959g0060 Nicotiana tabacum HOM05D011509 ORTHO05D014159 2.4e-13 80.9 49 79.6
Sc01g0005720 Simmondsia chinensis HOM05D000963 ORTHO05D004715 2.4e-13 80.9 47 80.9
CAN.G965.10 Capsicum annuum HOM05D000963 ORTHO05D004715 3.1e-13 80.5 47 80.9
Medtr5g080940 Medicago truncatula HOM05D000963 ORTHO05D004715 3.1e-13 80.5 59 69.5
arahy.Tifrunner.gnm1.ann1.LM30Y3 Arachis hypogaea HOM05D000963 ORTHO05D004715 4.0e-13 80.1 42 85.7
BcaNung01516 Brassica carinata HOM05D000963 ORTHO05D004715 4.0e-13 80.1 54 68.5
HPP92_028430 Vanilla planifolia HOM05D000963 ORTHO05D004715 4.0e-13 80.1 42 88.1
CAN.G1185.10 Capsicum annuum HOM05D000963 ORTHO05D004715 5.3e-13 79.7 42 85.7
Psat3g162200 Pisum sativum HOM05D000963 ORTHO05D004715 6.9e-13 79.3 43 86.0
CSS0016818 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D004715 9.0e-13 79.0 42 85.7
Dinv05169 Davidia involucrata HOM05D000963 ORTHO05D004715 9.0e-13 79.0 73 54.8
Medtr1g105230 Medicago truncatula HOM05D000963 ORTHO05D004715 1.2e-12 78.6 41 87.8
HPP92_028383 Vanilla planifolia HOM05D000963 ORTHO05D004715 1.2e-12 78.6 50 76.0
HPP92_028406 Vanilla planifolia HOM05D000963 ORTHO05D004715 1.2e-12 78.6 50 76.0
HPP92_028415 Vanilla planifolia HOM05D000963 ORTHO05D004715 1.2e-12 78.6 50 76.0
HPP92_028419 Vanilla planifolia HOM05D000963 ORTHO05D004715 1.2e-12 78.6 50 76.0
HPP92_028432 Vanilla planifolia HOM05D000963 ORTHO05D004715 1.2e-12 78.6 50 76.0
Nitab4.5_0008665g0030 Nicotiana tabacum HOM05D000963 ORTHO05D004715 2.0e-12 77.8 41 87.8
Actinidia23508 Actinidia chinensis HOM05D000963 ORTHO05D004715 2.6e-12 77.4 40 90.0
Gohir.A01G139826 Gossypium hirsutum HOM05D000963 ORTHO05D004715 2.6e-12 77.4 42 85.7
Lsat_1_v5_gn_1_109481 Lactuca sativa HOM05D000963 ORTHO05D004715 3.4e-12 77.0 42 83.3
arahy.Tifrunner.gnm1.ann1.R4PVYI Arachis hypogaea HOM05D000963 ORTHO05D004715 5.8e-12 76.3 57 66.7
CsaV3_2G008200 Cucumis sativus L. HOM05D000963 ORTHO05D004715 5.8e-12 76.3 38 92.1
Nitab4.5_0002452g0010 Nicotiana tabacum HOM05D011509 ORTHO05D014159 5.8e-12 76.3 47 78.7
CAN.G184.80 Capsicum annuum HOM05D000890 ORTHO05D000697 7.6e-12 75.9 46 80.4
Nitab4.5_0004743g0120 Nicotiana tabacum HOM05D011509 ORTHO05D014159 7.6e-12 75.9 44 84.1
Nitab4.5_0002558g0060 Nicotiana tabacum HOM05D011509 ORTHO05D014159 1.0e-11 75.5 47 80.9
Solyc02g083210.2 Solanum lycopersicum HOM05D011509 ORTHO05D014159 1.0e-11 75.5 48 79.2
Nitab4.5_0001702g0010 Nicotiana tabacum HOM05D011509 ORTHO05D010305 1.7e-11 74.7 47 78.7
VMungo0331G0858 Vigna mungo HOM05D000963 ORTHO05D004715 2.2e-11 74.3 70 55.7
Nitab4.5_0000196g0030 Nicotiana tabacum HOM05D011509 ORTHO05D014159 2.9e-11 73.9 49 75.5
Oeu015131.2 Olea europaea HOM05D000963 ORTHO05D004715 2.9e-11 73.9 44 77.3
Sed0003522 Sechium edule HOM05D000963 ORTHO05D004715 2.9e-11 73.9 42 85.7
Sed0006422 Sechium edule HOM05D000963 ORTHO05D004715 2.9e-11 73.9 42 85.7
Gohir.A01G139250 Gossypium hirsutum HOM05D000963 ORTHO05D004715 3.8e-11 73.6 44 81.8
FAN18G1953 Fragaria x ananassa HOM05D000315 ORTHO05D004100 6.5e-11 72.8 42 85.7
ECA074G0007 Erigeron canadensis HOM05D000963 ORTHO05D004715 1.1e-10 72.0 37 91.9
ECA074G0008 Erigeron canadensis HOM05D000963 ORTHO05D004715 1.1e-10 72.0 37 91.9
Gorai.002G027900 Gossypium raimondii HOM05D000963 ORTHO05D004715 2.5e-10 70.9 57 63.2
TPR.G27622 Trifolium pratense HOM05D000963 ORTHO05D004715 3.2e-10 70.5 38 84.2
Gorai.012G060700 Gossypium raimondii HOM05D000963 ORTHO05D004715 7.1e-10 69.3 49 69.4
Phvul.003G259600 Phaseolus vulgaris HOM05D000963 ORTHO05D004715 7.1e-10 69.3 39 82.1
Mapoly0147s0015 Marchantia polymorpha HOM05D000963 ORTHO05D004715 9.3e-10 68.9 40 80.0
Sabra11G0069300 Salix brachista HOM05D000963 ORTHO05D004715 9.3e-10 68.9 42 81.0
arahy.Tifrunner.gnm1.ann1.D5AR02 Arachis hypogaea HOM05D000963 ORTHO05D004715 1.2e-09 68.6 93 46.2
FAN13G1706 Fragaria x ananassa HOM05D000963 ORTHO05D004715 1.6e-09 68.2 37 89.2
Nitab4.5_0000172g2300 Nicotiana tabacum HOM05D011509 ORTHO05D014159 2.1e-09 67.8 49 71.4
arahy.Tifrunner.gnm1.ann1.QZA5BL Arachis hypogaea HOM05D000963 ORTHO05D004715 3.5e-09 67.0 36 88.9
Gohir.D01G023469 Gossypium hirsutum HOM05D000963 ORTHO05D004715 3.5e-09 67.0 37 86.5
Oeu012821.1 Olea europaea HOM05D000963 ORTHO05D004715 1.8e-08 64.7 37 81.1
Nitab4.5_0004300g0250 Nicotiana tabacum HOM05D011509 ORTHO05D014159 5.1e-08 63.2 36 83.3
Nitab4.5_0010333g0030 Nicotiana tabacum HOM05D008204 ORTHO05D010378 5.1e-08 63.2 101 41.6
Nitab4.5_0001152g0090 Nicotiana tabacum HOM05D011509 ORTHO05D014159 8.7e-08 62.4 44 70.5
Nitab4.5_0012599g0060 Nicotiana tabacum HOM05D008204 ORTHO05D010378 2.5e-07 60.8 101 40.6
Gohir.A04G039030 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.3e-06 58.5 32 90.6
Psat5g119040 Pisum sativum HOM05D000963 ORTHO05D004715 1.6e-06 58.2 54 55.6
Glyma.06G274000 Glycine max HOM05D000963 ORTHO05D004715 2.1e-06 57.8 42 69.0
Nitab4.5_0001761g0060 Nicotiana tabacum HOM05D016096 ORTHO05D016167 3.7e-06 57.0 101 39.6
Gohir.D01G169154 Gossypium hirsutum HOM05D000963 ORTHO05D004715 6.2e-06 56.2 34 82.4
Nitab4.5_0012234g0080 Nicotiana tabacum HOM05D000963 ORTHO05D004715 6.2e-06 56.2 25 100.0


User provided reference genes

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