Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G159.4 Capsicum annuum HOM05D007021 ORTHO05D008916 5.5e-119 431.0 225 100.0
PGSC0003DMG400022612 Solanum tuberosum HOM05D007021 ORTHO05D008916 2.8e-86 322.4 225 78.7
Solyc05g006440.4 Solanum lycopersicum HOM05D007021 ORTHO05D008916 2.3e-80 302.8 222 74.8
Sopen05g002370 Solanum pennellii HOM05D007021 ORTHO05D008916 8.6e-80 300.8 222 74.3
Nitab4.5_0004119g0020 Nicotiana tabacum HOM05D007021 ORTHO05D008916 2.4e-66 256.1 174 81.0
Nitab4.5_0002312g0020 Nicotiana tabacum HOM05D007021 ORTHO05D008916 9.3e-66 254.2 174 80.5
Dinv18013 Davidia involucrata HOM05D007021 ORTHO05D008916 1.7e-56 223.4 224 60.3
CSS0017706 Camellia sinensis var. sinensis HOM05D007021 ORTHO05D008916 7.4e-55 218.0 231 60.2
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 3.1e-53 212.6 219 60.3
GSVIVG01008459001 Vitis vinifera HOM05D007021 ORTHO05D008916 1.5e-52 210.3 235 54.9
MSTRG.11303 Avicennia marina HOM05D007021 ORTHO05D008916 3.4e-52 209.1 228 53.5
Hma1.2p1_0163F.1_g073000 Hydrangea macrophylla HOM05D007021 ORTHO05D008916 9.9e-52 207.6 224 55.4
QL10p030610 Quercus lobata HOM05D007021 ORTHO05D008916 1.3e-51 207.2 231 53.7
Cpa.g.sc3.381 Carica papaya HOM05D007021 ORTHO05D008916 4.9e-51 205.3 243 55.1
Migut.I00268 Erythranthe guttata HOM05D007021 ORTHO05D008916 1.1e-50 204.1 220 55.5
CiPaw.16G096000 Carya illinoinensis HOM05D007021 ORTHO05D008916 1.9e-50 203.4 236 54.2
Atru.chr9.1670 Acer truncatum HOM05D007021 ORTHO05D008916 3.2e-50 202.6 218 56.0
Gorai.006G191500 Gossypium raimondii HOM05D007021 ORTHO05D008916 3.2e-50 202.6 218 56.4
ClCG06G014200 Citrullus lanatus HOM05D007021 ORTHO05D008916 6.0e-49 198.4 236 53.0
Potri.015G036500 Populus trichocarpa HOM05D007021 ORTHO05D008916 1.3e-48 197.2 232 55.2
Glyma.08G055300 Glycine max HOM05D007021 ORTHO05D008916 2.3e-48 196.4 209 58.9
Gohir.A09G174900 Gossypium hirsutum HOM05D007021 ORTHO05D008916 2.3e-48 196.4 210 57.6
Cfa019639 Carpinus fangiana HOM05D007021 ORTHO05D008916 3.0e-48 196.1 187 62.6
RcHm_v2.0_Chr7g0178211 Rosa chinensis HOM05D007021 ORTHO05D008916 5.1e-48 195.3 238 52.9
Cc04_g06110 Coffea canephora HOM05D007021 ORTHO05D008916 8.7e-48 194.5 112 91.1
Thecc.03G058600 Theobroma cacao HOM05D007021 ORTHO05D008916 1.9e-47 193.4 215 54.4
Lj9A418T22 Lonicera japonica HOM05D007021 ORTHO05D008916 4.3e-47 192.2 175 63.4
Sed0001257 Sechium edule HOM05D007021 ORTHO05D008916 4.3e-47 192.2 236 52.5
Glyma.05G246900 Glycine max HOM05D007021 ORTHO05D008916 7.4e-47 191.4 230 53.0
Manes.06G004800 Manihot esculenta HOM05D007021 ORTHO05D008916 7.4e-47 191.4 182 61.5
TAR623G0728 Trochodendron aralioides HOM05D007021 ORTHO05D008916 7.4e-47 191.4 187 61.0
Sabra15G0029900 Salix brachista HOM05D007021 ORTHO05D008916 9.6e-47 191.0 232 53.9
Aqoxy1G00082 Aquilegia oxysepala HOM05D007021 ORTHO05D008916 1.3e-46 190.7 180 62.2
Nn7g37125 Nelumbo nucifera HOM05D007021 ORTHO05D008916 1.3e-46 190.7 114 86.8
Gohir.D09G170185 Gossypium hirsutum HOM05D007021 ORTHO05D008916 2.1e-46 189.9 115 86.1
Lalb_Chr05g0221591 Lupinus albus HOM05D007021 ORTHO05D008916 2.1e-46 189.9 209 56.0
COL.COLO4_28897 Corchorus olitorius HOM05D007021 ORTHO05D008916 2.8e-46 189.5 179 64.2
Prupe.5G234700 Prunus persica HOM05D007021 ORTHO05D008916 2.8e-46 189.5 235 51.5
Ciclev10009503m.g Citrus clementina HOM05D007021 ORTHO05D008916 3.7e-46 189.1 225 51.6
Lj4g0002555 Lotus japonicus HOM05D007021 ORTHO05D008916 6.2e-46 188.3 106 91.5
PGR044G2095 Punica granatum HOM05D007021 ORTHO05D008916 6.2e-46 188.3 114 86.8
Psat7g001280 Pisum sativum HOM05D007021 ORTHO05D008916 8.1e-46 188.0 106 90.6
Medtr8g107430 Medicago truncatula HOM05D007021 ORTHO05D008916 1.1e-45 187.6 106 91.5
MBI13_g41749_MAGBIO Magnolia biondii HOM05D007021 ORTHO05D008916 1.4e-45 187.2 114 83.3
VMungo0251G3404 Vigna mungo HOM05D007021 ORTHO05D008916 1.4e-45 187.2 225 52.9
TWI81G0868 Tripterygium wilfordii HOM05D007021 ORTHO05D008916 1.8e-45 186.8 245 51.0
CANSAT80G0297 Cannabis sativa HOM05D007021 ORTHO05D008916 2.4e-45 186.4 112 87.5
CANSAT80G1746 Cannabis sativa HOM05D007021 ORTHO05D008916 2.4e-45 186.4 112 87.5
FAN04G2374 Fragaria x ananassa HOM05D007021 ORTHO05D008916 2.4e-45 186.4 238 54.2
Rhsim12G0138000 Rhododendron simsii HOM05D007021 ORTHO05D008916 3.1e-45 186.0 116 87.1
FAN08G1321 Fragaria x ananassa HOM05D007021 ORTHO05D008916 5.3e-45 185.3 238 53.8
CsaV3_1G004470 Cucumis sativus L. HOM05D007021 ORTHO05D008916 1.2e-44 184.1 115 82.6
Oeu046158.1 Olea europaea HOM05D007021 ORTHO05D008916 1.2e-44 184.1 111 86.5
unitig_899.g15339 Utricularia gibba HOM05D007021 ORTHO05D008916 1.2e-44 184.1 109 89.0
FvH4_5g17480 Fragaria vesca HOM05D007021 ORTHO05D008916 1.5e-44 183.7 238 53.4
FAN18G1853 Fragaria x ananassa HOM05D007021 ORTHO05D008916 1.5e-44 183.7 238 53.4
arahy.Tifrunner.gnm1.ann1.I2I16V Arachis hypogaea HOM05D007021 ORTHO05D008916 2.0e-44 183.3 150 71.3
Gorai.003G035100 Gossypium raimondii HOM05D007021 ORTHO05D008916 2.6e-44 183.0 115 83.5
Phvul.002G331000 Phaseolus vulgaris HOM05D007021 ORTHO05D008916 2.6e-44 183.0 232 50.4
TPR.G1394 Trifolium pratense HOM05D007021 ORTHO05D008916 2.6e-44 183.0 105 90.5
arahy.Tifrunner.gnm1.ann1.2FQ1SS Arachis hypogaea HOM05D007021 ORTHO05D008916 4.5e-44 182.2 105 89.5
HanXRQChr15g0486591 Helianthus annuus HOM05D007021 ORTHO05D008916 5.8e-44 181.8 201 53.7
Gorai.004G090100 Gossypium raimondii HOM05D007021 ORTHO05D008916 7.6e-44 181.4 115 81.7
MD06G1228200 Malus domestica HOM05D007021 ORTHO05D008916 7.6e-44 181.4 106 87.7
MELO3C017374.2 Cucumis melo HOM05D007021 ORTHO05D008916 1.0e-43 181.0 115 81.7
ECA232G1431 Erigeron canadensis HOM05D000006 ORTHO05D000091 1.0e-43 181.0 112 83.9
Gohir.D03G033500 Gossypium hirsutum HOM05D007021 ORTHO05D008916 1.0e-43 181.0 115 81.7
Lsat_1_v5_gn_8_115881 Lactuca sativa HOM05D007021 ORTHO05D008916 1.0e-43 181.0 207 54.6
Gohir.D08G085600 Gossypium hirsutum HOM05D007021 ORTHO05D008916 1.3e-43 180.6 115 81.7
Aa31LG8G4800 Aethionema arabicum HOM05D007021 ORTHO05D008916 2.2e-43 179.9 109 82.6
Os01g0805200 Oryza sativa ssp. japonica HOM05D007021 ORTHO05D008916 2.2e-43 179.9 108 85.2
Thhalv10021570m.g Eutrema salsugineum HOM05D007021 ORTHO05D008916 2.9e-43 179.5 220 49.5
C05p48360 Brassica napus HOM05D007021 ORTHO05D008916 4.9e-43 178.7 137 70.8
Eucgr.K02276 Eucalyptus grandis HOM05D007021 ORTHO05D008916 4.9e-43 178.7 106 89.6
HPP92_019433 Vanilla planifolia HOM05D007021 ORTHO05D008916 4.9e-43 178.7 112 82.1
Haze_18883 Corylus avellana HOM05D007021 ORTHO05D008916 1.1e-42 177.6 130 74.6
PSO384G2008 Papaver somniferum HOM05D007021 ORTHO05D008916 1.9e-42 176.8 112 83.9
Peaxi162Scf00828g00016 Petunia axillaris HOM05D007021 ORTHO05D008916 1.9e-42 176.8 168 63.1
Hund08707 Selenicereus undatus HOM05D007021 ORTHO05D008916 1.9e-42 176.8 108 82.4
BcaB06g25855 Brassica carinata HOM05D007021 ORTHO05D008916 2.5e-42 176.4 134 70.9
ATR1096G089 Amborella trichopoda HOM05D007021 ORTHO05D008916 3.2e-42 176.0 114 78.9
Carub.0003s1766 Capsella rubella HOM05D007021 ORTHO05D008916 3.2e-42 176.0 107 82.2
BcaC05g28735 Brassica carinata HOM05D007021 ORTHO05D008916 4.2e-42 175.6 107 82.2
A05p31870 Brassica napus HOM05D007021 ORTHO05D008916 4.2e-42 175.6 107 82.2
BolC5t33573H Brassica oleracea HOM05D007021 ORTHO05D008916 4.2e-42 175.6 107 82.2
BraA05t22019Z Brassica rapa HOM05D007021 ORTHO05D008916 4.2e-42 175.6 107 82.2
PSO339G6055 Papaver somniferum HOM05D007021 ORTHO05D008916 4.2e-42 175.6 112 83.0
AL3G31100 Arabidopsis lyrata HOM05D007021 ORTHO05D008916 5.5e-42 175.3 107 81.3
AT3G17930 Arabidopsis thaliana HOM05D007021 ORTHO05D008916 5.5e-42 175.3 107 81.3
FAN13G1201 Fragaria x ananassa HOM05D007021 ORTHO05D008916 5.5e-42 175.3 113 83.2
Sp3g16050 Schrenkiella parvula HOM05D007021 ORTHO05D008916 1.2e-41 174.1 108 80.6
THA.LOC104821829 Tarenaya hassleriana HOM05D007021 ORTHO05D008916 1.2e-41 174.1 110 79.1
CARHR093260 Cardamine hirsuta HOM05D007021 ORTHO05D008916 2.1e-41 173.3 107 80.4
Sc04g0004860 Simmondsia chinensis HOM05D007021 ORTHO05D008916 4.6e-41 172.2 107 81.3
Zm00001eb150510 Zea mays HOM05D007021 ORTHO05D008916 1.3e-40 170.6 106 82.1
SEGI_41594 Sequoiadendron giganteum HOM05D007021 ORTHO05D008916 1.8e-40 170.2 107 83.2
EL10Ac8g19152 Beta vulgaris HOM05D007021 ORTHO05D008916 4.3e-39 165.6 113 75.2
Pp3c5_23310 Physcomitrium patens HOM05D007021 ORTHO05D008916 4.8e-38 162.2 111 70.3
CDE04G1339 Ceratophyllum demersum HOM05D000015 ORTHO05D002445 1.1e-37 161.0 97 80.4
Gohir.1Z049463 Gossypium hirsutum HOM05D007021 ORTHO05D008916 2.0e-36 156.8 218 48.6
SMO353G0175 Selaginella moellendorffii HOM05D007021 ORTHO05D008916 2.9e-35 152.9 109 71.6
AagrBONN_evm.TU.Sc2ySwM_340.579 Anthoceros agrestis HOM05D007021 ORTHO05D008916 2.5e-34 149.8 106 68.9
AagrBONN_evm.TU.Sc2ySwM_117.710 Anthoceros agrestis HOM05D007021 ORTHO05D008916 5.5e-34 148.7 158 51.9
Mapoly0023s0040 Marchantia polymorpha HOM05D007021 ORTHO05D008916 3.5e-33 146.0 103 69.9
DCAR_014390 Daucus carota HOM05D007021 ORTHO05D008916 3.9e-32 142.5 89 85.4
CDE07G1635 Ceratophyllum demersum HOM05D007021 ORTHO05D008916 6.7e-32 141.7 137 57.7
Duzib068G0088 Durio zibethinus HOM05D007021 ORTHO05D008916 8.7e-32 141.4 224 44.6
CBR_g48186 Chara braunii HOM05D007021 ORTHO05D008916 5.7e-31 138.7 107 65.4
AUR62025165 Chenopodium quinoa HOM05D007021 ORTHO05D008916 1.0e-27 127.9 86 76.7
AUR62029014 Chenopodium quinoa HOM05D007021 ORTHO05D008916 1.0e-27 127.9 86 76.7
Cre01.g000850 Chlamydomonas reinhardtii HOM05D007021 ORTHO05D008916 8.8e-24 114.8 104 54.8
MD14G1237400 Malus domestica HOM05D007021 ORTHO05D008916 5.9e-20 102.1 88 65.9
Oeu010907.1 Olea europaea HOM05D007021 ORTHO05D008916 7.7e-20 101.7 160 42.5
MCO16G182 Micromonas commoda HOM05D007021 ORTHO05D008916 3.6e-17 92.8 79 57.0
PRCOL_00000692 Prasinoderma coloniale HOM05D007021 ORTHO05D008916 1.4e-16 90.9 107 46.7
Cc04_g06120 Coffea canephora HOM05D007021 ORTHO05D153017 1.5e-07 60.8 89 44.9


User provided reference genes

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