Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 1.5e-53 212.6 110 100.0
CAN.G795.4 Capsicum annuum HOM05D004553 ORTHO05D005426 7.3e-32 140.6 111 66.7
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 1.2e-23 113.2 70 82.9
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 1.5e-21 106.3 70 78.6
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 2.0e-21 105.9 70 78.6
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 2.6e-21 105.5 70 78.6
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 3.4e-21 105.1 70 75.7
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 5.8e-21 104.4 70 75.7
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 6.4e-20 100.9 70 74.3
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 8.4e-20 100.5 70 74.3
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 1.1e-19 100.1 91 60.4
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 1.4e-19 99.8 70 74.3
CAN.G907.20 Capsicum annuum HOM05D004553 ORTHO05D005426 1.9e-19 99.4 61 83.6
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 1.9e-19 99.4 70 72.9
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 1.9e-19 99.4 70 70.0
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 5.4e-19 97.8 70 72.9
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 2.1e-18 95.9 90 56.7
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 2.7e-18 95.5 70 68.6
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 2.7e-18 95.5 71 70.4
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 4.6e-18 94.7 70 71.4
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 7.8e-18 94.0 70 67.1
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 7.8e-18 94.0 71 69.0
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 1.0e-17 93.6 70 71.4
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 1.0e-17 93.6 74 64.9
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 1.3e-17 93.2 71 69.0
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 1.7e-17 92.8 70 68.6
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 2.3e-17 92.4 71 69.0
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 2.3e-17 92.4 71 67.6
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 2.3e-17 92.4 70 65.7
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 2.3e-17 92.4 93 53.8
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 3.0e-17 92.0 72 66.7
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 3.0e-17 92.0 72 66.7
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 3.0e-17 92.0 71 66.2
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 3.9e-17 91.7 70 67.1
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 3.9e-17 91.7 72 69.4
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 3.9e-17 91.7 71 67.6
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 3.9e-17 91.7 71 67.6
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 3.9e-17 91.7 71 67.6
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 5.1e-17 91.3 71 70.4
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 5.1e-17 91.3 93 52.7
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 8.7e-17 90.5 71 69.0
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 8.7e-17 90.5 71 67.6
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 8.7e-17 90.5 71 67.6
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 8.7e-17 90.5 71 67.6
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 8.7e-17 90.5 91 56.0
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 8.7e-17 90.5 71 67.6
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 8.7e-17 90.5 72 66.7
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 1.1e-16 90.1 71 69.0
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 1.1e-16 90.1 91 56.0
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 1.1e-16 90.1 72 65.3
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 1.1e-16 90.1 72 65.3
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 1.5e-16 89.7 90 54.4
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 1.5e-16 89.7 71 67.6
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 1.5e-16 89.7 70 65.7
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 1.5e-16 89.7 71 67.6
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 1.5e-16 89.7 70 67.1
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 1.5e-16 89.7 70 65.7
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 1.9e-16 89.4 71 63.4
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 1.9e-16 89.4 72 65.3
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 1.9e-16 89.4 71 67.6
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.9e-16 89.4 71 67.6
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 2.5e-16 89.0 71 69.0
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 2.5e-16 89.0 71 69.0
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 3.3e-16 88.6 71 67.6
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 3.3e-16 88.6 71 67.6
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 3.3e-16 88.6 72 65.3
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 4.3e-16 88.2 72 62.5
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 4.3e-16 88.2 72 65.3
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 4.3e-16 88.2 72 63.9
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 4.3e-16 88.2 89 59.6
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 4.3e-16 88.2 71 66.2
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 5.6e-16 87.8 92 54.3
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 5.6e-16 87.8 71 67.6
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 5.6e-16 87.8 71 66.2
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 5.6e-16 87.8 87 56.3
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 7.3e-16 87.4 71 63.4
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 7.3e-16 87.4 71 66.2
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 7.3e-16 87.4 71 66.2
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 7.3e-16 87.4 91 52.7
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 7.3e-16 87.4 91 54.9
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 9.6e-16 87.0 71 62.0
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 9.6e-16 87.0 71 62.0
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 9.6e-16 87.0 90 53.3
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 9.6e-16 87.0 71 66.2
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 9.6e-16 87.0 72 65.3
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 9.6e-16 87.0 70 67.1
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.2e-15 86.7 92 54.3
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 1.2e-15 86.7 71 60.6
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.2e-15 86.7 71 66.2
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 1.6e-15 86.3 71 60.6
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 1.6e-15 86.3 71 60.6
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 1.6e-15 86.3 71 60.6
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 1.6e-15 86.3 71 63.4
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 1.6e-15 86.3 72 59.7
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 1.6e-15 86.3 71 66.2
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 2.1e-15 85.9 71 60.6
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 2.1e-15 85.9 71 62.0
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 2.1e-15 85.9 71 64.8
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 2.1e-15 85.9 89 59.6
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 2.8e-15 85.5 74 63.5
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 2.8e-15 85.5 71 59.2
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 2.8e-15 85.5 71 63.4
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 2.8e-15 85.5 70 65.7
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 3.6e-15 85.1 71 60.6
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 3.6e-15 85.1 71 59.2
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 3.6e-15 85.1 71 59.2
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 3.6e-15 85.1 71 59.2
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 4.7e-15 84.7 73 64.4
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 4.7e-15 84.7 71 63.4
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 4.7e-15 84.7 70 64.3
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 6.2e-15 84.3 76 59.2
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 6.2e-15 84.3 93 49.5
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 6.2e-15 84.3 89 56.2
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 8.1e-15 84.0 91 51.6
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 8.1e-15 84.0 72 62.5
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 1.4e-14 83.2 71 64.8
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 1.8e-14 82.8 72 61.1
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 1.8e-14 82.8 72 61.1
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 2.4e-14 82.4 71 63.4
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 4.0e-14 81.6 94 46.8
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 4.4e-13 78.2 91 47.3
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 5.8e-13 77.8 94 46.8
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 1.3e-12 76.6 69 60.9
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 2.2e-12 75.9 87 49.4
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 1.9e-11 72.8 69 56.5
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 7.8e-10 67.4 66 54.5
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 2.3e-09 65.9 71 49.3
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 3.0e-09 65.5 40 80.0
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 3.0e-09 65.5 40 80.0
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 3.9e-09 65.1 72 47.2
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 5.1e-09 64.7 50 66.0
Nitab4.5_0002915g0090 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.9e-08 62.8 79 48.1
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 1.3e-07 60.1 72 50.0
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 2.8e-07 58.9 79 45.6
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 6.2e-07 57.8 40 77.5
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 1.1e-06 57.0 69 44.9
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 1.8e-06 56.2 77 48.1
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 4.0e-06 55.1 75 42.7
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 4.0e-06 55.1 70 47.1


User provided reference genes

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