Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 4.0e-100 368.2 205 100.0
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 3.1e-84 315.5 206 88.3
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 4.2e-81 305.1 207 87.0
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 3.7e-69 265.4 168 83.9
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 3.1e-68 262.3 189 77.2
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 6.3e-53 211.5 161 74.5
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 4.8e-45 185.3 208 56.7
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 1.0e-39 167.5 208 52.4
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 1.8e-39 166.8 99 83.8
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 4.4e-38 162.2 213 49.8
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.4e-36 157.1 212 47.6
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 1.2e-35 154.1 200 45.5
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.6e-35 153.7 205 47.3
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 7.7e-35 151.4 205 47.3
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 7.7e-35 151.4 205 47.3
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 1.7e-34 150.2 205 46.8
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 1.7e-34 150.2 205 46.8
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 1.7e-34 150.2 205 46.8
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 2.9e-34 149.4 205 46.8
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 2.9e-34 149.4 205 48.3
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 3.8e-34 149.1 198 47.5
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 5.0e-34 148.7 211 47.4
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 1.5e-33 147.1 200 48.5
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 3.2e-33 146.0 215 46.0
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 4.2e-33 145.6 203 47.8
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 5.5e-33 145.2 209 45.5
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 5.5e-33 145.2 208 45.2
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 9.4e-33 144.4 202 47.0
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 9.4e-33 144.4 206 45.1
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 1.6e-32 143.7 203 46.3
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 1.6e-32 143.7 203 45.8
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 2.1e-32 143.3 200 45.5
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 2.1e-32 143.3 211 46.4
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 2.1e-32 143.3 207 44.4
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 3.6e-32 142.5 206 46.1
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 4.7e-32 142.1 206 45.6
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 6.1e-32 141.7 213 43.2
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.0e-31 141.0 206 44.2
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 1.8e-31 140.2 204 45.1
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 2.3e-31 139.8 200 44.5
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 2.3e-31 139.8 209 44.0
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 8.8e-31 137.9 206 44.7
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 1.5e-30 137.1 203 42.9
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.5e-30 137.1 205 47.8
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 1.5e-30 137.1 207 43.5
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 2.0e-30 136.7 212 44.8
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 2.0e-30 136.7 223 41.7
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 2.6e-30 136.3 205 44.4
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 5.7e-30 135.2 200 44.0
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 5.7e-30 135.2 213 43.7
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 5.7e-30 135.2 221 44.8
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 7.5e-30 134.8 201 43.8
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 9.7e-30 134.4 207 45.4
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 9.7e-30 134.4 207 43.0
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.7e-29 133.7 207 43.0
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.7e-29 133.7 208 46.2
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 2.2e-29 133.3 218 44.5
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 2.8e-29 132.9 172 47.7
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 2.8e-29 132.9 211 44.5
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.8e-29 132.9 208 46.2
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 4.8e-29 132.1 207 42.5
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 4.8e-29 132.1 211 43.1
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 8.2e-29 131.3 206 44.2
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.1e-28 131.0 208 44.7
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 1.4e-28 130.6 210 45.2
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 1.8e-28 130.2 200 43.5
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 4.1e-28 129.0 210 43.3
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 4.1e-28 129.0 214 39.3
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 5.3e-28 128.6 201 43.8
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 7.0e-28 128.3 187 46.0
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 9.1e-28 127.9 213 39.9
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 1.6e-27 127.1 212 42.9
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 3.5e-27 125.9 208 43.8
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 4.5e-27 125.6 203 49.3
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 4.5e-27 125.6 173 48.6
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 5.9e-27 125.2 190 41.6
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 7.7e-27 124.8 175 46.3
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 1.0e-26 124.4 196 42.9
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 1.3e-26 124.0 203 48.3
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 1.7e-26 123.6 207 46.4
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 1.7e-26 123.6 207 43.0
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 2.2e-26 123.2 219 37.4
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 2.9e-26 122.9 200 44.0
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 3.8e-26 122.5 214 40.7
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 8.5e-26 121.3 211 38.4
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 8.5e-26 121.3 214 38.8
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 8.5e-26 121.3 212 40.6
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 1.1e-25 120.9 175 46.3
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 1.1e-25 120.9 175 46.3
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.9e-25 120.2 215 37.2
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.2e-25 119.0 208 44.2
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 5.5e-25 118.6 202 40.6
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 5.5e-25 118.6 215 40.0
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 7.2e-25 118.2 202 42.1
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 1.2e-24 117.5 172 46.5
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 1.6e-24 117.1 218 41.7
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 3.6e-24 115.9 224 38.8
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 8.0e-24 114.8 200 43.5
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 1.4e-23 114.0 231 33.3
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 1.8e-23 113.6 203 40.9
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 5.2e-23 112.1 200 42.5
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 5.2e-23 112.1 200 42.5
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 1.2e-22 110.9 224 33.0
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 1.2e-22 110.9 218 39.9
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 1.2e-22 110.9 207 40.6
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.5e-22 110.5 200 42.0
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 2.0e-22 110.2 197 37.1
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 2.0e-22 110.2 221 37.1
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 2.0e-22 110.2 206 40.3
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 5.7e-22 108.6 236 30.9
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 9.8e-22 107.8 208 37.0
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 9.8e-22 107.8 73 75.3
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 3.1e-20 102.8 222 37.4
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 3.1e-20 102.8 89 65.2
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 9.1e-20 101.3 192 41.1
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.2e-19 100.9 206 35.9
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 1.6e-19 100.5 194 35.1
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 2.0e-19 100.1 211 39.3
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 2.0e-19 100.1 208 35.1
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 3.5e-19 99.4 227 36.1
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 3.5e-19 99.4 224 38.4
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 3.5e-19 99.4 205 36.1
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 4.5e-19 99.0 218 34.4
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 5.9e-19 98.6 204 36.8
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 7.7e-19 98.2 232 35.3
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 1.3e-18 97.4 216 35.2
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 1.5e-17 94.0 219 34.2
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 1.9e-17 93.6 194 33.0
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 1.9e-17 93.6 112 51.8
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 7.2e-17 91.7 181 40.9
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 7.2e-17 91.7 190 33.7
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 7.2e-17 91.7 221 34.8
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 1.2e-16 90.9 253 30.0
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 2.1e-16 90.1 202 34.2
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 3.6e-16 89.4 193 33.2
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 3.6e-16 89.4 209 34.0
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 1.4e-15 87.4 193 32.6
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 1.4e-15 87.4 193 32.6
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 1.4e-15 87.4 193 32.6
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 1.4e-15 87.4 182 32.4
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 1.8e-15 87.0 193 33.2
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 1.8e-15 87.0 219 32.0
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 2.3e-15 86.7 255 31.0
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 2.3e-15 86.7 216 33.8
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 4.0e-15 85.9 204 35.8
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 1.2e-14 84.3 193 31.6
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.2e-14 84.3 186 32.8
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 3.4e-14 82.8 206 31.1
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 9.8e-14 81.3 160 36.2
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 4.9e-13 79.0 210 31.4
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 1.6e-11 73.9 74 51.4
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 3.5e-11 72.8 203 29.6
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 5.9e-11 72.0 187 30.5
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 7.8e-11 71.6 195 30.3
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 7.8e-11 71.6 195 30.3
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 2.9e-10 69.7 206 33.5
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 5.0e-10 68.9 166 34.9
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 5.0e-10 68.9 166 34.9
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 1.9e-09 67.0 161 31.1
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.5e-09 66.6 209 28.2
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 7.3e-09 65.1 205 29.8
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 4.7e-08 62.4 212 29.7
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 4.7e-08 62.4 63 50.8
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 6.1e-08 62.0 204 30.4
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.8e-07 60.5 58 53.4
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 2.3e-07 60.1 58 53.4
Os02g0505500 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 2.3e-07 60.1 43 69.8
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 2.3e-07 60.1 173 30.6
Os09g0511300 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 4.0e-07 59.3 144 30.6
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 6.8e-07 58.5 185 31.4
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 8.9e-07 58.2 60 51.7
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.0e-06 57.0 128 31.2
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 5.7e-06 55.5 197 28.9
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 9.8e-06 54.7 229 26.2


User provided reference genes

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