Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1585.8 Capsicum annuum HOM05D006213 ORTHO05D008107 1.1e-287 992.6 500 100.0
Solyc01g089900.4 Solanum lycopersicum HOM05D006213 ORTHO05D008107 1.3e-272 942.6 500 93.2
Peaxi162Scf00853g00316 Petunia axillaris HOM05D006213 ORTHO05D008107 5.7e-233 810.8 502 81.9
Nitab4.5_0004837g0040 Nicotiana tabacum HOM05D006213 ORTHO05D008107 1.5e-228 796.2 524 79.4
Sopen01g035740 Solanum pennellii HOM05D006213 ORTHO05D008107 4.2e-228 794.7 415 94.2
Dinv44047 Davidia involucrata HOM05D006213 ORTHO05D008107 2.4e-223 778.9 495 75.4
Migut.B01508 Erythranthe guttata HOM05D006213 ORTHO05D008107 4.4e-217 758.1 489 74.4
MSTRG.20674 Avicennia marina HOM05D006213 ORTHO05D008107 9.8e-217 756.9 489 74.6
RcHm_v2.0_Chr1g0346061 Rosa chinensis HOM05D006213 ORTHO05D008107 2.2e-216 755.7 496 72.0
ECA234G2079 Erigeron canadensis HOM05D006213 ORTHO05D008107 1.1e-215 753.4 490 73.3
SalBow5G4694 Salvia bowleyana HOM05D006213 ORTHO05D008107 4.1e-215 751.5 487 74.7
Oeu037443.2 Olea europaea HOM05D006213 ORTHO05D008107 5.4e-215 751.1 468 77.1
HanXRQChr17g0562541 Helianthus annuus HOM05D006213 ORTHO05D008107 7.0e-215 750.7 495 72.1
QL04p029079 Quercus lobata HOM05D006213 ORTHO05D008107 2.3e-213 745.7 488 71.9
CiPaw.13G025000 Carya illinoinensis HOM05D006213 ORTHO05D008107 2.9e-213 745.3 495 70.7
Thecc.01G397800 Theobroma cacao HOM05D006213 ORTHO05D008107 1.8e-210 736.1 490 71.8
Ciclev10019843m.g Citrus clementina HOM05D006213 ORTHO05D008107 2.0e-209 732.6 491 70.7
CsaV3_6G006460 Cucumis sativus L. HOM05D006213 ORTHO05D008107 1.7e-208 729.6 495 70.5
ClCG06G000670 Citrullus lanatus HOM05D006213 ORTHO05D008107 2.8e-208 728.8 495 69.3
Actinidia30939 Actinidia chinensis HOM05D006213 ORTHO05D008107 2.4e-207 725.7 475 74.1
TWI14G1148 Tripterygium wilfordii HOM05D006213 ORTHO05D008107 4.1e-207 724.9 495 70.5
Manes.05G056250 Manihot esculenta HOM05D006213 ORTHO05D008107 5.4e-207 724.5 496 70.4
Sed0013772 Sechium edule HOM05D006213 ORTHO05D008107 7.0e-207 724.2 495 69.1
Aqoxy3G02673 Aquilegia oxysepala HOM05D006213 ORTHO05D008107 1.6e-206 723.0 499 70.3
Gorai.004G166900 Gossypium raimondii HOM05D006213 ORTHO05D008107 1.6e-206 723.0 490 71.0
Lsat_1_v5_gn_4_39261 Lactuca sativa HOM05D006213 ORTHO05D008107 2.0e-206 722.6 492 70.7
Gohir.A08G139600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 2.7e-206 722.2 490 70.6
Duzib133G0253 Durio zibethinus HOM05D006213 ORTHO05D008107 2.3e-205 719.2 484 71.7
Eucgr.E01545 Eucalyptus grandis HOM05D006213 ORTHO05D008107 3.8e-205 718.4 495 69.5
PGR042G3832 Punica granatum HOM05D006213 ORTHO05D008107 3.8e-205 718.4 495 69.9
Gohir.D08G160600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 5.0e-205 718.0 490 70.2
arahy.Tifrunner.gnm1.ann1.SKJX1Q Arachis hypogaea HOM05D006213 ORTHO05D008107 1.9e-204 716.1 496 69.4
Potri.002G139200 Populus trichocarpa HOM05D006213 ORTHO05D008107 3.3e-204 715.3 496 70.0
Prupe.2G122100 Prunus persica HOM05D006213 ORTHO05D008107 5.6e-204 714.5 469 72.1
FvH4_7g09360 Fragaria vesca HOM05D006213 ORTHO05D008107 7.3e-204 714.1 496 69.2
FAN06G2734 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.2e-203 713.4 511 67.5
FAN06G3851 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.2e-203 713.4 511 67.5
FAN06G4345 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.2e-203 713.4 511 67.5
GSVIVG01018298001 Vitis vinifera HOM05D006213 ORTHO05D008107 1.5e-201 706.4 469 72.1
PSO017G1536 Papaver somniferum HOM05D006213 ORTHO05D008107 3.4e-201 705.3 489 68.3
FAN03G1287 Fragaria x ananassa HOM05D006213 ORTHO05D008107 5.8e-201 704.5 511 67.1
COL.COLO4_12385 Corchorus olitorius HOM05D006213 ORTHO05D008107 1.7e-200 703.0 464 72.2
PSO837G0013 Papaver somniferum HOM05D006213 ORTHO05D008107 3.7e-200 701.8 489 68.3
MBI04_g13842_MAGBIO Magnolia biondii HOM05D006213 ORTHO05D008107 6.4e-200 701.0 496 68.8
Lalb_Chr12g0210581 Lupinus albus HOM05D006213 ORTHO05D008107 7.0e-199 697.6 490 68.4
Psat4g223120 Pisum sativum HOM05D006213 ORTHO05D008107 7.0e-199 697.6 492 67.7
Glyma.03G108200 Glycine max HOM05D006213 ORTHO05D008107 7.8e-198 694.1 492 68.1
Sc23g0004890 Simmondsia chinensis HOM05D006213 ORTHO05D008107 2.3e-197 692.6 495 66.5
CANSAT25G1963 Cannabis sativa HOM05D006213 ORTHO05D008107 8.6e-197 690.6 495 67.5
Sabra02G0108200 Salix brachista HOM05D006213 ORTHO05D008107 9.5e-196 687.2 547 63.4
CARHR000180 Cardamine hirsuta HOM05D006213 ORTHO05D008107 1.2e-195 686.8 495 66.9
Medtr8g007345 Medicago truncatula HOM05D006213 ORTHO05D008107 1.1e-194 683.7 483 66.7
Phvul.010G045600 Phaseolus vulgaris HOM05D006213 ORTHO05D008107 1.8e-194 682.9 494 67.2
Nn1g00791 Nelumbo nucifera HOM05D006213 ORTHO05D008107 4.0e-194 681.8 492 66.9
Sabra02G0108400 Salix brachista HOM05D006213 ORTHO05D008107 4.0e-194 681.8 547 62.9
Carub.0001s0002 Capsella rubella HOM05D006213 ORTHO05D008107 4.4e-193 678.3 492 65.7
MELO3C022474.2 Cucumis melo HOM05D006213 ORTHO05D008107 9.8e-193 677.2 457 70.0
AL1G10080 Arabidopsis lyrata HOM05D006213 ORTHO05D008107 1.7e-192 676.4 489 66.1
BraA10t42287Z Brassica rapa HOM05D006213 ORTHO05D008107 3.7e-192 675.2 493 65.1
A10p00090 Brassica napus HOM05D006213 ORTHO05D008107 4.9e-192 674.9 493 65.1
C05p00060 Brassica napus HOM05D006213 ORTHO05D008107 8.3e-192 674.1 493 64.9
BolC5t28793H Brassica oleracea HOM05D006213 ORTHO05D008107 8.3e-192 674.1 493 64.9
Sp1g00110 Schrenkiella parvula HOM05D006213 ORTHO05D008107 8.3e-192 674.1 489 65.8
THA.LOC104814061 Tarenaya hassleriana HOM05D006213 ORTHO05D008107 1.1e-191 673.7 492 67.5
Aa31LG1G11550 Aethionema arabicum HOM05D006213 ORTHO05D008107 5.4e-191 671.4 524 63.0
Os04g0544900 Oryza sativa ssp. japonica HOM05D006213 ORTHO05D008107 4.3e-188 661.8 489 64.4
ATR0665G630 Amborella trichopoda HOM05D006213 ORTHO05D008107 2.1e-187 659.4 482 65.8
Lj3g0010513 Lotus japonicus HOM05D006213 ORTHO05D008107 4.7e-187 658.3 475 67.8
HPP92_020680 Vanilla planifolia HOM05D006213 ORTHO05D008107 4.7e-187 658.3 487 65.7
AUR62013761 Chenopodium quinoa HOM05D006213 ORTHO05D008107 6.2e-187 657.9 525 62.9
CDE02G2871 Ceratophyllum demersum HOM05D006213 ORTHO05D008107 2.3e-186 656.0 480 62.9
MD07G1098100 Malus domestica HOM05D006213 ORTHO05D008107 3.1e-186 655.6 438 73.1
vmacro13511 Vaccinium macrocarpon HOM05D006213 ORTHO05D008107 4.0e-186 655.2 608 57.2
BcaC07g42440 Brassica carinata HOM05D006213 ORTHO05D008107 1.3e-184 650.2 493 62.9
BraA09t42282Z Brassica rapa HOM05D006213 ORTHO05D008107 3.7e-184 648.7 493 63.5
SGA_v2.0_scaffold52G19244 Striga asiatica HOM05D006213 ORTHO05D008107 1.4e-183 646.7 468 70.3
AT1G02145 Arabidopsis thaliana HOM05D006213 ORTHO05D008107 5.6e-180 634.8 453 66.2
TPR.G32127 Trifolium pratense HOM05D006213 ORTHO05D008107 2.6e-177 625.9 520 59.8
PGSC0003DMG402031172 Solanum tuberosum HOM05D006213 ORTHO05D008107 1.2e-174 617.1 334 93.4
Hund17106 Selenicereus undatus HOM05D006213 ORTHO05D008107 3.3e-172 609.0 495 62.0
A09p69370 Brassica napus HOM05D006213 ORTHO05D008107 9.6e-172 607.4 505 59.8
Zm00001eb075160 Zea mays HOM05D006213 ORTHO05D008107 2.4e-170 602.8 484 61.0
AUR62023393 Chenopodium quinoa HOM05D006213 ORTHO05D008107 2.1e-166 589.7 517 58.8
Nitab4.5_0000563g0240 Nicotiana tabacum HOM05D006213 ORTHO05D008107 2.7e-166 589.3 988 41.4
BcaB03g13635 Brassica carinata HOM05D006213 ORTHO05D008107 7.8e-166 587.8 492 58.7
Thhalv10007459m.g Eutrema salsugineum HOM05D006213 ORTHO05D008107 2.3e-165 586.3 414 68.8
FAN10G1434 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.1e-162 577.4 431 64.5
BolC8t52928H Brassica oleracea HOM05D006213 ORTHO05D008107 6.7e-157 558.1 510 55.9
Glyma.07G119300 Glycine max HOM05D006213 ORTHO05D008107 1.1e-156 557.4 394 67.8
EL10Ac1g00745 Beta vulgaris HOM05D006213 ORTHO05D008107 1.3e-155 553.9 495 57.2
Mapoly0044s0100 Marchantia polymorpha HOM05D006213 ORTHO05D008107 1.9e-151 540.0 484 55.0
unitig_8.g3848 Utricularia gibba HOM05D006213 ORTHO05D008107 1.9e-151 540.0 484 58.9
Lj2g0022411 Lotus japonicus HOM05D006213 ORTHO05D008107 4.6e-150 535.4 396 64.9
AagrBONN_evm.TU.Sc2ySwM_344.5349 Anthoceros agrestis HOM05D006213 ORTHO05D008107 3.0e-149 532.7 482 54.6
Cc02_g25210 Coffea canephora HOM05D006213 ORTHO05D008107 5.7e-148 528.5 364 73.9
Pp3c18_21620 Physcomitrium patens HOM05D006213 ORTHO05D008107 8.2e-147 524.6 497 51.9
TAR374G1216 Trochodendron aralioides HOM05D006213 ORTHO05D008107 2.0e-145 520.0 355 73.5
VMungo0331G0117 Vigna mungo HOM05D006213 ORTHO05D008107 3.4e-137 492.7 689 42.8
Haze_02866 Corylus avellana HOM05D006213 ORTHO05D008107 1.1e-130 471.1 527 51.0
SMO117G0345 Selaginella moellendorffii HOM05D006213 ORTHO05D008107 4.5e-129 465.7 427 55.3
BcaC07g42336 Brassica carinata HOM05D006213 ORTHO05D008107 1.9e-119 433.7 468 49.1
Lj9A554T27 Lonicera japonica HOM05D006213 ORTHO05D008107 8.0e-118 428.3 312 68.6
Sabra02G0107000 Salix brachista HOM05D006213 ORTHO05D008107 1.5e-108 397.5 348 58.0
SGA_v2.0_scaffold340G49332 Striga asiatica HOM05D006213 ORTHO05D008107 7.5e-108 395.2 497 48.1
Rhsim07G0037600 Rhododendron simsii HOM05D006213 ORTHO05D008107 3.2e-103 379.8 440 49.8
Atru.chr5.108 Acer truncatum HOM05D006213 ORTHO05D008107 2.0e-84 317.4 251 62.5
FAN01G1024 Fragaria x ananassa HOM05D006213 ORTHO05D008107 4.7e-78 296.2 201 71.6
MCO12G031 Micromonas commoda HOM05D006213 ORTHO05D008107 1.8e-77 294.3 547 36.4
SHI13624 Sapria himalayana HOM05D006213 ORTHO05D008107 1.0e-72 278.5 302 52.0
PRCOL_00003622 Prasinoderma coloniale HOM05D006213 ORTHO05D008107 9.9e-68 261.9 492 36.6
FAN06G1264 Fragaria x ananassa HOM05D006213 ORTHO05D008107 5.1e-64 249.6 201 62.7
SEGI_13726 Sequoiadendron giganteum HOM05D006213 ORTHO05D008107 3.1e-61 240.4 183 59.0
DCAR_029492 Daucus carota HOM05D006213 ORTHO05D008107 2.4e-58 230.7 161 68.9
arahy.Tifrunner.gnm1.ann1.RXQ5U4 Arachis hypogaea HOM05D006213 ORTHO05D008107 3.4e-44 183.7 161 61.5
Cc02_g25230 Coffea canephora HOM05D006213 ORTHO05D008107 6.0e-41 172.9 112 68.8
Ca_14798_v3 Cicer arietinum L. HOM05D006213 ORTHO05D008107 3.3e-39 167.2 115 70.4
SHI13625 Sapria himalayana HOM05D006213 ORTHO05D008107 1.0e-27 129.0 155 43.9
DCAR_029493 Daucus carota HOM05D006213 ORTHO05D008107 1.1e-23 115.5 66 74.2
Psat4g223040 Pisum sativum HOM05D006213 ORTHO05D008107 7.4e-23 112.8 80 71.2
Psat5g245640 Pisum sativum HOM05D000300 ORTHO05D000383 3.0e-16 90.9 64 65.6
Cc02_g25220 Coffea canephora HOM05D006213 ORTHO05D008107 1.3e-14 85.5 49 79.6
arahy.Tifrunner.gnm1.ann1.PL2W5K Arachis hypogaea HOM05D006213 ORTHO05D008107 2.2e-14 84.7 81 46.9
FAN06G1132 Fragaria x ananassa HOM05D006213 ORTHO05D008107 6.3e-14 83.2 101 45.5
Migut.B01510 Erythranthe guttata HOM05D006213 ORTHO05D003423 2.4e-13 81.3 43 81.4
TPR.G39431 Trifolium pratense HOM05D006213 ORTHO05D008107 1.4e-10 72.0 46 71.7
Haze_22168 Corylus avellana HOM05D005919 ORTHO05D007176 1.8e-08 65.1 204 27.9
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 1.8e-08 65.1 231 26.8
Atru.chr5.109 Acer truncatum HOM05D006213 ORTHO05D000044 5.1e-08 63.5 124 37.9
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 1.5e-07 62.0 230 23.9
Eucgr.C00228 Eucalyptus grandis HOM05D005919 ORTHO05D007176 2.0e-07 61.6 236 26.7
AUR62013597 Chenopodium quinoa HOM05D005919 ORTHO05D007176 5.7e-07 60.1 342 24.6
BcaC03g13443 Brassica carinata HOM05D005919 ORTHO05D007176 1.3e-06 58.9 216 27.8
FAN07G1390 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.3e-06 58.9 167 28.7
FAN22G0736 Fragaria x ananassa HOM05D005919 ORTHO05D007176 2.8e-06 57.8 226 26.1
arahy.Tifrunner.gnm1.ann1.KJ1SMN Arachis hypogaea HOM05D005919 ORTHO05D007176 3.7e-06 57.4 217 27.2
arahy.Tifrunner.gnm1.ann1.7FR1J2 Arachis hypogaea HOM05D005919 ORTHO05D007176 6.3e-06 56.6 217 28.1
arahy.Tifrunner.gnm1.ann1.L1AVC7 Arachis hypogaea HOM05D005919 ORTHO05D007176 6.3e-06 56.6 217 28.1
A02p02750 Brassica napus HOM05D005919 ORTHO05D007176 6.3e-06 56.6 216 26.9
Rhsim01G0012200 Rhododendron simsii HOM05D005919 ORTHO05D007176 6.3e-06 56.6 198 29.3
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 8.2e-06 56.2 361 23.3
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 8.2e-06 56.2 361 23.3


User provided reference genes

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